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Protein

UBA domain-containing protein mud1

Gene

mud1

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • aspartic-type endopeptidase activity Source: InterPro
  • polyubiquitin binding Source: PomBase
  • SNARE binding Source: PomBase

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Protein transport, Transport

Names & Taxonomyi

Protein namesi
Recommended name:
UBA domain-containing protein mud1
Alternative name(s):
DNA-damage-inducible protein DDI1 homolog
UBA domain-containing protein 1
Gene namesi
Name:mud1
Synonyms:ddi1, ucp1
ORF Names:SPAC56F8.08
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome I

Organism-specific databases

EuPathDBiFungiDB:SPAC56F8.08.
PomBaseiSPAC56F8.08. mud1.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000966431 – 332UBA domain-containing protein mud1Add BLAST332

Proteomic databases

MaxQBiQ10256.
PRIDEiQ10256.

Interactioni

GO - Molecular functioni

  • polyubiquitin binding Source: PomBase
  • SNARE binding Source: PomBase

Protein-protein interaction databases

BioGridi280553. 12 interactors.
MINTiMINT-216411.

Structurei

Secondary structure

1332
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi296 – 305Combined sources10
Helixi310 – 319Combined sources10
Turni320 – 322Combined sources3
Helixi324 – 331Combined sources8

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1Z96X-ray1.80A/B293-332[»]
ProteinModelPortaliQ10256.
SMRiQ10256.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ10256.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini291 – 332UBAPROSITE-ProRule annotationAdd BLAST42

Sequence similaritiesi

Contains 1 UBA domain.PROSITE-ProRule annotation

Phylogenomic databases

HOGENOMiHOG000234736.
InParanoidiQ10256.
KOiK11885.
OrthoDBiEOG092C4Q00.
PhylomeDBiQ10256.

Family and domain databases

InterProiIPR033322. DDI1.
IPR019103. Peptidase_aspartic_DDI1-type.
IPR021109. Peptidase_aspartic_dom.
IPR015940. UBA.
IPR009060. UBA-like.
[Graphical view]
PANTHERiPTHR12917:SF1. PTHR12917:SF1. 1 hit.
PfamiPF09668. Asp_protease. 1 hit.
PF00627. UBA. 1 hit.
[Graphical view]
SMARTiSM00165. UBA. 1 hit.
[Graphical view]
SUPFAMiSSF46934. SSF46934. 1 hit.
SSF50630. SSF50630. 1 hit.
PROSITEiPS50030. UBA. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q10256-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNNLTPENIR QTILATPFLL NRIRTEFPQL AAVLNDPNAF ATTWQSINAS
60 70 80 90 100
QLLQIPSSTY SMGMPSFSED DLFDVEVQRR IEEQIRQNAV TENMQSAIEN
110 120 130 140 150
HPEVFGQVYM LFVNVEINGH KVKAFVDSGA QATILSADCA EKCGLTRLLD
160 170 180 190 200
TRFQGVAKGV GMAKILGCVH SAPLKIGDLY LPCRFTVIEG RDVDMLLGLD
210 220 230 240 250
MLRRYQACID LENNVLRIHG KEIPFLGESE IPKLLANVEP SANAHGLGIE
260 270 280 290 300
PASKASASSP NPQSGTRLGT KESVAPNNEG SSNPPSLVNP PTDPGLNSKI
310 320 330
AQLVSMGFDP LEAAQALDAA NGDLDVAASF LL
Length:332
Mass (Da):35,870
Last modified:October 1, 1996 - v1
Checksum:i47E7514CF9DA3502
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329670 Genomic DNA. Translation: CAA93579.1.
PIRiT38918.
RefSeqiNP_001018195.1. NM_001018619.2.

Genome annotation databases

EnsemblFungiiSPAC56F8.08.1; SPAC56F8.08.1:pep; SPAC56F8.08.
GeneIDi3361477.
KEGGispo:SPAC56F8.08.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329670 Genomic DNA. Translation: CAA93579.1.
PIRiT38918.
RefSeqiNP_001018195.1. NM_001018619.2.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1Z96X-ray1.80A/B293-332[»]
ProteinModelPortaliQ10256.
SMRiQ10256.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi280553. 12 interactors.
MINTiMINT-216411.

Proteomic databases

MaxQBiQ10256.
PRIDEiQ10256.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiSPAC56F8.08.1; SPAC56F8.08.1:pep; SPAC56F8.08.
GeneIDi3361477.
KEGGispo:SPAC56F8.08.

Organism-specific databases

EuPathDBiFungiDB:SPAC56F8.08.
PomBaseiSPAC56F8.08. mud1.

Phylogenomic databases

HOGENOMiHOG000234736.
InParanoidiQ10256.
KOiK11885.
OrthoDBiEOG092C4Q00.
PhylomeDBiQ10256.

Miscellaneous databases

EvolutionaryTraceiQ10256.
PROiQ10256.

Family and domain databases

InterProiIPR033322. DDI1.
IPR019103. Peptidase_aspartic_DDI1-type.
IPR021109. Peptidase_aspartic_dom.
IPR015940. UBA.
IPR009060. UBA-like.
[Graphical view]
PANTHERiPTHR12917:SF1. PTHR12917:SF1. 1 hit.
PfamiPF09668. Asp_protease. 1 hit.
PF00627. UBA. 1 hit.
[Graphical view]
SMARTiSM00165. UBA. 1 hit.
[Graphical view]
SUPFAMiSSF46934. SSF46934. 1 hit.
SSF50630. SSF50630. 1 hit.
PROSITEiPS50030. UBA. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiMUD1_SCHPO
AccessioniPrimary (citable) accession number: Q10256
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: October 1, 1996
Last modified: November 30, 2016
This is version 120 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.