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Q10003 (GPC1A_CAEEL) Reviewed, UniProtKB/Swiss-Prot

Last modified May 1, 2013. Version 74. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Putative glycerophosphocholine phosphodiesterase GPCPD1 homolog T05H10.7
EC=3.1.-.-
Gene names
ORF Names:T05H10.7
OrganismCaenorhabditis elegans [Reference proteome]
Taxonomic identifier6239 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Ecdysozoa › Nematoda › Chromadorea › Rhabditida › Rhabditoidea › Rhabditidae › Peloderinae › Caenorhabditis

Protein attributes

Sequence length796 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Sequence similarities

Belongs to the glycerophosphoryl diester phosphodiesterase family.

Contains 1 CBM20 (carbohydrate binding type-20) domain.

Contains 1 GDPD domain.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 796796Putative glycerophosphocholine phosphodiesterase GPCPD1 homolog T05H10.7
PRO_0000065449

Regions

Domain78 – 195118CBM20
Domain406 – 706301GDPD
Compositional bias38 – 425Poly-Glu
Compositional bias67 – 704Poly-Glu
Compositional bias524 – 5274Poly-Glu

Sequences

Sequence LengthMass (Da)Tools
Q10003 [UniParc].

Last modified October 1, 1996. Version 1.
Checksum: 7BDF8E0A4D2AA9F1

FASTA79690,831
        10         20         30         40         50         60 
MHFTRRAVSP RASFVFDRHV GTINSSLSRR PRISECVEEE EEDGGGFDLF EEMRQPIQEN 

        70         80         90        100        110        120 
IPMIILEEEE DDNDNLVMSV ARPVRVHFAV DVENLHAHQS VYVVGSNDVL GTWEATRAMP 

       130        140        150        160        170        180 
LVQDPDRFMR WKGSIVTDVH QLKFRYFIGY NLMSDQGERL IVDKWEAFLH PRSTLCLAES 

       190        200        210        220        230        240 
RNDECRVDRV DLFGYYAGRK CVSDGWLQYP DENQILLRLH GNALKFYKTA KERKNCRVKM 

       250        260        270        280        290        300 
TPLDVRFKAP PSGHISFSYG EDEEDEEEDQ NVPSNKCTHS ATHVAVLSDP RPKFYDQEDT 

       310        320        330        340        350        360 
GVTFNNNKDY LVFRTHCLAA EFLAFYIEIF SEERKRIGAC YALPSSLQDA SGIIHLPFIN 

       370        380        390        400        410        420 
SSGRPIGQVS IEYLCVRALT RLDGPQFMDQ TYCRHWKKRN ALEVGHRGAG NSYTKFAMAR 

       430        440        450        460        470        480 
ENTIHSLNTA AKNGADYVEF DVQLTKDRIA VIYHDFHVLV SVARRDGLAM PPPMTREQLD 

       490        500        510        520        530        540 
SSNLDYHELP VKDLKLSQLK LLMLDHLSFP QKKENVKKLV EAGEEEEDFK PFPTLLEALT 

       550        560        570        580        590        600 
KVDPDVGFNV EVKYPMMQNN GEHECDHYFE RNLFVDVILA DVMKHAGNRR IMFSSFDPDI 

       610        620        630        640        650        660 
CSMVATKQNK YPVLFLCVGE TQRYTPFQDQ RTSTSMTAVN FAAGADLLGV NFNSEDLLKD 

       670        680        690        700        710        720 
PMPVKKANEF GMVTFVWGED LDKKENINYF KKELGVDGVI YDRIGEEERR RNVFIVEREQ 

       730        740        750        760        770        780 
KRALLSCSGA STPQRAASPS PVSSENNNTS PPHSAKLTRN AQSDSALLEE NEDDVEHLSD 

       790 
KLNITGFQSA PMVSTK

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References

[1]"Genome sequence of the nematode C. elegans: a platform for investigating biology."
The C. elegans sequencing consortium
Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Bristol N2.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		Z47812, Z47811 Genomic DNA. Translation: CAA87796.1.
PIRT23238.
RefSeqNP_001022321.1. NM_001027150.1.
UniGeneCel.24207.

3D structure databases

ProteinModelPortalQ10003.
SMRQ10003. Positions 405-702.
ModBaseSearch...

Proteomic databases

PaxDbQ10003.
PRIDEQ10003.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaT05H10.7a; T05H10.7a; T05H10.7.
GeneID174296.
KEGGcel:CELE_T05H10.7.
UCSCT05H10.7b.1. c. elegans.

Organism-specific databases

CTD174296.
WormBaseT05H10.7a; CE03637; WBGene00011511.

Phylogenomic databases

eggNOGCOG0584.
GeneTreeENSGT00440000033970.
InParanoidQ10003.
OMAHDLTCCI.

Gene expression databases

ArrayExpressQ10003.

Family and domain databases

Gene3D2.60.40.10. 1 hit.
3.20.20.190. 1 hit.
InterProIPR013784. Carb-bd-like_fold.
IPR002044. CBM_fam20.
IPR004129. GlyceroP-diester-Pdiesterase.
IPR013783. Ig-like_fold.
IPR017946. PLC-like_Pdiesterase_TIM-brl.
[Graphical view]
PfamPF00686. CBM_20. 1 hit.
PF03009. GDPD. 1 hit.
[Graphical view]
SMARTSM01065. CBM_2. 1 hit.
[Graphical view]
SUPFAMSSF49452. CBD_4. 1 hit.
SSF51695. PLC-like_Pdiesterase_TIM-brl. 1 hit.
PROSITEPS51166. CBM20. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio883412.

Entry information

Entry nameGPC1A_CAEEL
AccessionPrimary (citable) accession number: Q10003
Entry history
Integrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: October 1, 1996
Last modified: May 1, 2013
This is version 74 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Relevant documents

Caenorhabditis elegans

Caenorhabditis elegans: entries, gene names and cross-references to WormBase

SIMILARITY comments

Index of protein domains and families

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