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Protein

D-xylose-proton symporter-like 3, chloroplastic

Gene

At5g59250

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Sugar transport, Transport

Protein family/group databases

TCDBi2.A.1.1.103. the major facilitator superfamily (mfs).

Names & Taxonomyi

Protein namesi
Recommended name:
D-xylose-proton symporter-like 3, chloroplastic
Gene namesi
Ordered Locus Names:At5g59250
ORF Names:MNC17.140, MNC17.15
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

TAIRiAT5G59250.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei98 – 11821Helical; Name=1Sequence analysisAdd
BLAST
Transmembranei146 – 16621Helical; Name=2Sequence analysisAdd
BLAST
Transmembranei175 – 19521Helical; Name=3Sequence analysisAdd
BLAST
Transmembranei197 – 21721Helical; Name=4Sequence analysisAdd
BLAST
Transmembranei238 – 25821Helical; Name=5Sequence analysisAdd
BLAST
Transmembranei264 – 28421Helical; Name=6Sequence analysisAdd
BLAST
Transmembranei359 – 37921Helical; Name=7Sequence analysisAdd
BLAST
Transmembranei400 – 42021Helical; Name=8Sequence analysisAdd
BLAST
Transmembranei426 – 44621Helical; Name=9Sequence analysisAdd
BLAST
Transmembranei449 – 46921Helical; Name=10Sequence analysisAdd
BLAST
Transmembranei491 – 51121Helical; Name=11Sequence analysisAdd
BLAST
Transmembranei522 – 54221Helical; Name=12Sequence analysisAdd
BLAST

GO - Cellular componenti

  • chloroplast Source: TAIR
  • chloroplast envelope Source: TAIR
  • chloroplast membrane Source: UniProtKB-SubCell
  • integral component of plasma membrane Source: GO_Central
Complete GO annotation...

Keywords - Cellular componenti

Chloroplast, Membrane, Plastid

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transit peptidei1 – 3131ChloroplastSequence analysisAdd
BLAST
Chaini32 – 558527D-xylose-proton symporter-like 3, chloroplasticPRO_0000259881Add
BLAST

Proteomic databases

PaxDbiQ0WWW9.
PRIDEiQ0WWW9.

PTM databases

iPTMnetiQ0WWW9.

Expressioni

Gene expression databases

GenevisibleiQ0WWW9. AT.

Interactioni

Protein-protein interaction databases

BioGridi21287. 1 interaction.
STRINGi3702.AT5G59250.1.

Structurei

3D structure databases

ProteinModelPortaliQ0WWW9.
SMRiQ0WWW9. Positions 107-554.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transit peptide, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG0254. Eukaryota.
ENOG410XNQK. LUCA.
HOGENOMiHOG000202868.
InParanoidiQ0WWW9.
OMAiFVGSFQI.
PhylomeDBiQ0WWW9.

Family and domain databases

InterProiIPR020846. MFS_dom.
IPR005828. MFS_sugar_transport_like.
IPR003663. Sugar/inositol_transpt.
IPR005829. Sugar_transporter_CS.
[Graphical view]
PfamiPF00083. Sugar_tr. 1 hit.
[Graphical view]
PRINTSiPR00171. SUGRTRNSPORT.
SUPFAMiSSF103473. SSF103473. 2 hits.
TIGRFAMsiTIGR00879. SP. 1 hit.
PROSITEiPS50850. MFS. 1 hit.
PS00217. SUGAR_TRANSPORT_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q0WWW9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAFAVSVQSH FAIRALKRDH FKNPSPRTFC SCFKSRPDSS YLSLKERTCF
60 70 80 90 100
VSKPGLVTTR YRHIFQVGAE TGGEFADSGE VADSLASDAP ESFSWSSVIL
110 120 130 140 150
PFIFPALGGL LFGYDIGATS GATLSLQSPA LSGTTWFNFS PVQLGLVVSG
160 170 180 190 200
SLYGALLGSI SVYGVADFLG RRRELIIAAV LYLLGSLITG CAPDLNILLV
210 220 230 240 250
GRLLYGFGIG LAMHGAPLYI AETCPSQIRG TLISLKELFI VLGILLGFSV
260 270 280 290 300
GSFQIDVVGG WRYMYGFGTP VALLMGLGMW SLPASPRWLL LRAVQGKGQL
310 320 330 340 350
QEYKEKAMLA LSKLRGRPPG DKISEKLVDD AYLSVKTAYE DEKSGGNFLE
360 370 380 390 400
VFQGPNLKAL TIGGGLVLFQ QITGQPSVLY YAGSILQTAG FSAAADATRV
410 420 430 440 450
SVIIGVFKLL MTWVAVAKVD DLGRRPLLIG GVSGIALSLF LLSAYYKFLG
460 470 480 490 500
GFPLVAVGAL LLYVGCYQIS FGPISWLMVS EIFPLRTRGR GISLAVLTNF
510 520 530 540 550
GSNAIVTFAF SPLKEFLGAE NLFLLFGGIA LVSLLFVILV VPETKGLSLE

EIESKILK
Length:558
Mass (Da):59,829
Last modified:November 14, 2006 - v2
Checksum:iCAE26ED800053C85
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti74 – 741E → D in BAE98379 (Ref. 4) Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB016890 Genomic DNA. Translation: BAB09770.1.
CP002688 Genomic DNA. Translation: AED97162.1.
BT015354 mRNA. Translation: AAU05477.1.
BT020338 mRNA. Translation: AAV85693.1.
AK226214 mRNA. Translation: BAE98379.1.
RefSeqiNP_200733.2. NM_125315.4.
UniGeneiAt.43196.

Genome annotation databases

EnsemblPlantsiAT5G59250.1; AT5G59250.1; AT5G59250.
GeneIDi836043.
GrameneiAT5G59250.1; AT5G59250.1; AT5G59250.
KEGGiath:AT5G59250.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB016890 Genomic DNA. Translation: BAB09770.1.
CP002688 Genomic DNA. Translation: AED97162.1.
BT015354 mRNA. Translation: AAU05477.1.
BT020338 mRNA. Translation: AAV85693.1.
AK226214 mRNA. Translation: BAE98379.1.
RefSeqiNP_200733.2. NM_125315.4.
UniGeneiAt.43196.

3D structure databases

ProteinModelPortaliQ0WWW9.
SMRiQ0WWW9. Positions 107-554.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi21287. 1 interaction.
STRINGi3702.AT5G59250.1.

Protein family/group databases

TCDBi2.A.1.1.103. the major facilitator superfamily (mfs).

PTM databases

iPTMnetiQ0WWW9.

Proteomic databases

PaxDbiQ0WWW9.
PRIDEiQ0WWW9.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT5G59250.1; AT5G59250.1; AT5G59250.
GeneIDi836043.
GrameneiAT5G59250.1; AT5G59250.1; AT5G59250.
KEGGiath:AT5G59250.

Organism-specific databases

TAIRiAT5G59250.

Phylogenomic databases

eggNOGiKOG0254. Eukaryota.
ENOG410XNQK. LUCA.
HOGENOMiHOG000202868.
InParanoidiQ0WWW9.
OMAiFVGSFQI.
PhylomeDBiQ0WWW9.

Miscellaneous databases

PROiQ0WWW9.

Gene expression databases

GenevisibleiQ0WWW9. AT.

Family and domain databases

InterProiIPR020846. MFS_dom.
IPR005828. MFS_sugar_transport_like.
IPR003663. Sugar/inositol_transpt.
IPR005829. Sugar_transporter_CS.
[Graphical view]
PfamiPF00083. Sugar_tr. 1 hit.
[Graphical view]
PRINTSiPR00171. SUGRTRNSPORT.
SUPFAMiSSF103473. SSF103473. 2 hits.
TIGRFAMsiTIGR00879. SP. 1 hit.
PROSITEiPS50850. MFS. 1 hit.
PS00217. SUGAR_TRANSPORT_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Structural analysis of Arabidopsis thaliana chromosome 5. VIII. Sequence features of the regions of 1,081,958 bp covered by seventeen physically assigned P1 and TAC clones."
    Asamizu E., Sato S., Kaneko T., Nakamura Y., Kotani H., Miyajima N., Tabata S.
    DNA Res. 5:379-391(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Arabidopsis ORF clones."
    Cheuk R.F., Chen H., Kim C.J., Shinn P., Ecker J.R.
    Submitted (DEC-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  4. "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."
    Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.
    , Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K.
    Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  5. "Integral membrane proteins of the chloroplast envelope: identification and subcellular localization of new transporters."
    Ferro M., Salvi D., Riviere-Rolland H., Vermat T., Seigneurin-Berny D., Grunwald D., Garin J., Joyard J., Rolland N.
    Proc. Natl. Acad. Sci. U.S.A. 99:11487-11492(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: SUBCELLULAR LOCATION.
  6. "Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis."
    Froehlich J.E., Wilkerson C.G., Ray W.K., McAndrew R.S., Osteryoung K.W., Gage D.A., Phinney B.S.
    J. Proteome Res. 2:413-425(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
  7. "Proteomics of the chloroplast envelope membranes from Arabidopsis thaliana."
    Ferro M., Salvi D., Brugiere S., Miras S., Kowalski S., Louwagie M., Garin J., Joyard J., Rolland N.
    Mol. Cell. Proteomics 2:325-345(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: SUBCELLULAR LOCATION.
    Strain: cv. Wassilewskija.
  8. "The Arabidopsis thaliana chloroplast proteome reveals pathway abundance and novel protein functions."
    Kleffmann T., Russenberger D., von Zychlinski A., Christopher W., Sjoelander K., Gruissem W., Baginsky S.
    Curr. Biol. 14:354-362(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
  9. "The monosaccharide transporter gene family in land plants is ancient and shows differential subfamily expression and expansion across lineages."
    Johnson D.A., Hill J.P., Thomas M.A.
    BMC Evol. Biol. 6:64-64(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY.
  10. "Sorting signals, N-terminal modifications and abundance of the chloroplast proteome."
    Zybailov B., Rutschow H., Friso G., Rudella A., Emanuelsson O., Sun Q., van Wijk K.J.
    PLoS ONE 3:E1994-E1994(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiXYLL3_ARATH
AccessioniPrimary (citable) accession number: Q0WWW9
Secondary accession number(s): Q9FIF2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 14, 2006
Last sequence update: November 14, 2006
Last modified: July 6, 2016
This is version 71 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.