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Protein

Coatomer subunit gamma

Gene

At4g34450

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (By similarity).By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

ER-Golgi transport, Protein transport, Transport

Enzyme and pathway databases

ReactomeiR-ATH-6807878. COPI-mediated anterograde transport.
R-ATH-6811434. COPI-dependent Golgi-to-ER retrograde traffic.

Names & Taxonomyi

Protein namesi
Recommended name:
Coatomer subunit gamma
Alternative name(s):
Gamma-coat protein
Short name:
Gamma-COP
Gene namesi
Ordered Locus Names:At4g34450
ORF Names:T4L20.30
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

TAIRiAT4G34450.

Subcellular locationi

GO - Cellular componenti

  • chloroplast Source: TAIR
  • COPI vesicle coat Source: InterPro
  • cytosol Source: TAIR
  • membrane Source: TAIR
  • plasma membrane Source: TAIR
  • plasmodesma Source: TAIR
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm, Cytoplasmic vesicle, Golgi apparatus, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 886886Coatomer subunit gammaPRO_0000285627Add
BLAST

Proteomic databases

PaxDbiQ0WW26.
PRIDEiQ0WW26.

PTM databases

iPTMnetiQ0WW26.
SwissPalmiQ0WW26.

Expressioni

Gene expression databases

ExpressionAtlasiQ0WW26. baseline and differential.
GenevisibleiQ0WW26. AT.

Interactioni

Subunit structurei

Oligomeric complex that consists of at least the alpha, beta, beta', gamma, delta, epsilon and zeta subunits.By similarity

Protein-protein interaction databases

BioGridi14878. 3 interactions.
IntActiQ0WW26. 1 interaction.
STRINGi3702.AT4G34450.1.

Structurei

3D structure databases

ProteinModelPortaliQ0WW26.
SMRiQ0WW26. Positions 24-872.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati66 – 10338HEAT 1Add
BLAST
Repeati288 – 32538HEAT 2Add
BLAST
Repeati327 – 35933HEAT 3Add
BLAST
Repeati360 – 39738HEAT 4Add
BLAST
Repeati472 – 50938HEAT 5Add
BLAST

Sequence similaritiesi

Belongs to the COPG family.Curated
Contains 5 HEAT repeats.Curated

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG1078. Eukaryota.
COG5240. LUCA.
HOGENOMiHOG000184434.
InParanoidiQ0WW26.
KOiK17267.
OMAiNHLVFQF.
PhylomeDBiQ0WW26.

Family and domain databases

Gene3Di1.25.10.10. 1 hit.
2.60.40.1480. 1 hit.
3.30.310.30. 1 hit.
InterProiIPR011989. ARM-like.
IPR016024. ARM-type_fold.
IPR002553. Clathrin/coatomer_adapt-like_N.
IPR015873. Clathrin_a/coatomer_app_sub_C.
IPR009028. Coatomer/calthrin_app_sub_C.
IPR013041. Coatomer/clathrin_app_Ig-like.
IPR032154. Coatomer_g_Cpla.
IPR017106. Coatomer_gsu.
IPR013040. Coatomer_gsu_app_Ig-like-sub.
[Graphical view]
PANTHERiPTHR10261. PTHR10261. 1 hit.
PfamiPF01602. Adaptin_N. 1 hit.
PF16381. Coatomer_g_Cpla. 1 hit.
PF08752. COP-gamma_platf. 1 hit.
[Graphical view]
PIRSFiPIRSF037093. Coatomer_gamma_subunit. 1 hit.
SUPFAMiSSF48371. SSF48371. 1 hit.
SSF49348. SSF49348. 1 hit.
SSF55711. SSF55711. 1 hit.

Sequencei

Sequence statusi: Complete.

Q0WW26-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAQPLVKKDD DHDDELEYSP FMGIEKGAVL QEARVFNDPQ VDPRRCSQVI
60 70 80 90 100
TKLLYLLNQG ESFTKVEATE VFFSVTKLFQ SKDTGLRRMV YLIIKELSPS
110 120 130 140 150
SDEVIIVTSS LMKDMNSKID MYRANAIRVL CRIIDGTLLT QIERYLKQAI
160 170 180 190 200
VDKNPVVSSA ALVSGLHLLK TNPEIVKRWS NEVQEGIQSR SALVQFHALA
210 220 230 240 250
LLHQIRQNDR LAVSKLVGSL TRGSVRSPLA QCLLIRYTSQ VIRDMANHGQ
260 270 280 290 300
SGERPFYEFL ESCLRHKAEM VILEAARAIT ELDGVTSREL TPAITVLQLF
310 320 330 340 350
LSSPRPVLRF AAVRTLNKVA MTHPMAVTNC NIDMESLISD QNRSIATLAI
360 370 380 390 400
TTLLKTGNES SVERLMKQIT NFMSDIADEF KIVVVDAIRS LCVKFPLKYR
410 420 430 440 450
SLMTFLSNIL REEGGFEYKR AIVDSIVTII RDIPDAKESG LLHLCEFIED
460 470 480 490 500
CEFTYLSTQI LHFLGIEGPN TSDPSKYIRY IYNRVHLENA TVRAAAVSTL
510 520 530 540 550
AKFGFMVESL KPRITVLLKR CIYDSDDEVR DRATLYLSVL GGDGTVDTDK
560 570 580 590 600
ESKDFLFGSL EVPLVNMETS LKNYEPSEEA FDINSVPKEV KSQPLAEKKA
610 620 630 640 650
QGKKPTGLGA PPAAPASGFD GYERLLSSIP EFAAFGKLFK SSLPVELTEA
660 670 680 690 700
ETEYAVNVVK HIFDSHVVFQ YNCTNTIPEQ LLERVNVIVD ASEAEEFSEV
710 720 730 740 750
TSKALNSLPY DSPGQAFVVF EKPAGVPAVG KFSNTLTFVV KEVDPSTGEA
760 770 780 790 800
EDDGVEDEYQ LEDLEVVAGD YMVKVGVSNF RNAWESMDEE DERVDEYGLG
810 820 830 840 850
QRESLGEAVK AVMDLLGMQT CEGTETIPLN ARSHTCLLSG VYIGNVKVLV
860 870 880
RAQFGMDSSK DIAMKLTVRA EDVSVAEAIH EIVASG
Length:886
Mass (Da):98,491
Last modified:May 1, 2007 - v2
Checksum:i188840F332D97CAF
GO

Sequence cautioni

The sequence CAA18824.1 differs from that shown. Reason: Erroneous gene model prediction. Curated
The sequence CAB80162.1 differs from that shown. Reason: Erroneous gene model prediction. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL023094 Genomic DNA. Translation: CAA18824.1. Sequence problems.
AL161585 Genomic DNA. Translation: CAB80162.1. Sequence problems.
CP002687 Genomic DNA. Translation: AEE86378.1.
AK221839 mRNA. Translation: BAD94079.1.
AK226533 mRNA. Translation: BAE98672.1.
PIRiT05265.
RefSeqiNP_195171.2. NM_119610.3.
UniGeneiAt.25572.

Genome annotation databases

EnsemblPlantsiAT4G34450.1; AT4G34450.1; AT4G34450.
GeneIDi829596.
GrameneiAT4G34450.1; AT4G34450.1; AT4G34450.
KEGGiath:AT4G34450.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL023094 Genomic DNA. Translation: CAA18824.1. Sequence problems.
AL161585 Genomic DNA. Translation: CAB80162.1. Sequence problems.
CP002687 Genomic DNA. Translation: AEE86378.1.
AK221839 mRNA. Translation: BAD94079.1.
AK226533 mRNA. Translation: BAE98672.1.
PIRiT05265.
RefSeqiNP_195171.2. NM_119610.3.
UniGeneiAt.25572.

3D structure databases

ProteinModelPortaliQ0WW26.
SMRiQ0WW26. Positions 24-872.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi14878. 3 interactions.
IntActiQ0WW26. 1 interaction.
STRINGi3702.AT4G34450.1.

PTM databases

iPTMnetiQ0WW26.
SwissPalmiQ0WW26.

Proteomic databases

PaxDbiQ0WW26.
PRIDEiQ0WW26.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT4G34450.1; AT4G34450.1; AT4G34450.
GeneIDi829596.
GrameneiAT4G34450.1; AT4G34450.1; AT4G34450.
KEGGiath:AT4G34450.

Organism-specific databases

TAIRiAT4G34450.

Phylogenomic databases

eggNOGiKOG1078. Eukaryota.
COG5240. LUCA.
HOGENOMiHOG000184434.
InParanoidiQ0WW26.
KOiK17267.
OMAiNHLVFQF.
PhylomeDBiQ0WW26.

Enzyme and pathway databases

ReactomeiR-ATH-6807878. COPI-mediated anterograde transport.
R-ATH-6811434. COPI-dependent Golgi-to-ER retrograde traffic.

Miscellaneous databases

PROiQ0WW26.

Gene expression databases

ExpressionAtlasiQ0WW26. baseline and differential.
GenevisibleiQ0WW26. AT.

Family and domain databases

Gene3Di1.25.10.10. 1 hit.
2.60.40.1480. 1 hit.
3.30.310.30. 1 hit.
InterProiIPR011989. ARM-like.
IPR016024. ARM-type_fold.
IPR002553. Clathrin/coatomer_adapt-like_N.
IPR015873. Clathrin_a/coatomer_app_sub_C.
IPR009028. Coatomer/calthrin_app_sub_C.
IPR013041. Coatomer/clathrin_app_Ig-like.
IPR032154. Coatomer_g_Cpla.
IPR017106. Coatomer_gsu.
IPR013040. Coatomer_gsu_app_Ig-like-sub.
[Graphical view]
PANTHERiPTHR10261. PTHR10261. 1 hit.
PfamiPF01602. Adaptin_N. 1 hit.
PF16381. Coatomer_g_Cpla. 1 hit.
PF08752. COP-gamma_platf. 1 hit.
[Graphical view]
PIRSFiPIRSF037093. Coatomer_gamma_subunit. 1 hit.
SUPFAMiSSF48371. SSF48371. 1 hit.
SSF49348. SSF49348. 1 hit.
SSF55711. SSF55711. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana."
    Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B., Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M., de Simone V., Obermaier B.
    , Mache R., Mueller M., Kreis M., Delseny M., Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D., Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J., Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B., Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J., Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R., Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M., Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S., Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C., Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J., Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S., Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A., Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M., Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E., Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S., Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R., Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M., Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E., Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P., Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K., Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K., de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K., Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M., Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G., Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K., Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K., Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W., Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H., Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B., Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J., Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K., O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N., Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A., Martienssen R., McCombie W.R.
    Nature 402:769-777(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."
    Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.
    , Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K.
    Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 217-886.
    Strain: cv. Columbia.
  4. "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana."
    Jones A.M.E., MacLean D., Studholme D.J., Serna-Sanz A., Andreasson E., Rathjen J.P., Peck S.C.
    J. Proteomics 72:439-451(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Strain: cv. Columbia.

Entry informationi

Entry nameiCOPG_ARATH
AccessioniPrimary (citable) accession number: Q0WW26
Secondary accession number(s): O65673, Q56X38
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 1, 2007
Last sequence update: May 1, 2007
Last modified: June 8, 2016
This is version 84 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.