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Q0WV96 (NAC1_ARATH) Reviewed, UniProtKB/Swiss-Prot

Last modified May 1, 2013. Version 38. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
NAC domain-containing protein 1
Short name=ANAC001
Gene names
Name:NAC001
Ordered Locus Names:At1g01010
ORF Names:T25K16.1
OrganismArabidopsis thaliana (Mouse-ear cress) [Reference proteome]
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length429 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Subcellular location

Nucleus Probable.

Domain

The NAC domain includes a DNA-binding domain and a dimerization domain.

Sequence similarities

Contains 1 NAC domain.

Sequence caution

The sequence AAF26460.1 differs from that shown. Reason: Erroneous gene model prediction.

Ontologies

Keywords
   Biological processTranscription
Transcription regulation
   Cellular componentNucleus
   LigandDNA-binding
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processtranscription, DNA-dependent

Inferred from electronic annotation. Source: UniProtKB-KW

   Cellular_componentnucleus

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionDNA binding

Inferred from electronic annotation. Source: UniProtKB-KW

sequence-specific DNA binding transcription factor activity

Inferred from sequence or structural similarity PubMed 11118137. Source: TAIR

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 429429NAC domain-containing protein 1
PRO_0000376610

Regions

Domain3 – 156154NAC
DNA binding110 – 16253 By similarity

Experimental info

Sequence conflict1171V → A in BAE98952. Ref.4

Sequences

Sequence LengthMass (Da)Tools
Q0WV96 [UniParc].

Last modified May 26, 2009. Version 2.
Checksum: 4058A38B6A3D5E29

FASTA42949,426
        10         20         30         40         50         60 
MEDQVGFGFR PNDEELVGHY LRNKIEGNTS RDVEVAISEV NICSYDPWNL RFQSKYKSRD 

        70         80         90        100        110        120 
AMWYFFSRRE NNKGNRQSRT TVSGKWKLTG ESVEVKDQWG FCSEGFRGKI GHKRVLVFLD 

       130        140        150        160        170        180 
GRYPDKTKSD WVIHEFHYDL LPEHQRTYVI CRLEYKGDDA DILSAYAIDP TPAFVPNMTS 

       190        200        210        220        230        240 
SAGSVVNQSR QRNSGSYNTY SEYDSANHGQ QFNENSNIMQ QQPLQGSFNP LLEYDFANHG 

       250        260        270        280        290        300 
GQWLSDYIDL QQQVPYLAPY ENESEMIWKH VIEENFEFLV DERTSMQQHY SDHRPKKPVS 

       310        320        330        340        350        360 
GVLPDDSSDT ETGSMIFEDT SSSTDSVGSS DEPGHTRIDD IPSLNIIEPL HNYKAQEQPK 

       370        380        390        400        410        420 
QQSKEKVISS QKSECEWKMA EDSIKIPPST NTVKQSWIVL ENAQWNYLKN MIIGVLLFIS 


VISWIILVG

« Hide

References

« Hide 'large scale' references
[1]"Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K. expand/collapse author list , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[2]The Arabidopsis Information Resource (TAIR)
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: cv. Columbia.
[3]"Empirical analysis of transcriptional activity in the Arabidopsis genome."
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G. expand/collapse author list , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: cv. Columbia.
[4]"Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."
Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K. expand/collapse author list , Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K.
Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: cv. Columbia.
[5]"Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana."
Ooka H., Satoh K., Doi K., Nagata T., Otomo Y., Murakami K., Matsubara K., Osato N., Kawai J., Carninci P., Hayashizaki Y., Suzuki K., Kojima K., Takahara Y., Yamamoto K., Kikuchi S.
DNA Res. 10:239-247(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: GENE FAMILY, NOMENCLATURE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AC007323 Genomic DNA. Translation: AAF26460.1. Sequence problems.
CP002684 Genomic DNA. Translation: AEE27216.1.
AF439834 mRNA. Translation: AAL27505.1.
BT001115 mRNA. Translation: AAN64506.1.
AK226863 mRNA. Translation: BAE98952.1.
IPIIPI00516691.
PIRA86141.
RefSeqNP_171609.1. NM_099983.2.
UniGeneAt.26626.

3D structure databases

ProteinModelPortalQ0WV96.
SMRQ0WV96. Positions 6-156.
ModBaseSearch...

Protein-protein interaction databases

IntActQ0WV96. 30 interactions.

Proteomic databases

PRIDEQ0WV96.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsAT1G01010.1; AT1G01010.1; AT1G01010.
GeneID839580.
KEGGath:AT1G01010.

Organism-specific databases

TAIRAt1g01010.

Phylogenomic databases

eggNOGNOG265473.
HOGENOMHOG000113720.
OMAYENESEM.
PhylomeDBQ0WV96.
ProtClustDBCLSN2912764.

Gene expression databases

GenevestigatorQ0WV96.

Family and domain databases

InterProIPR003441. NAM.
[Graphical view]
PfamPF02365. NAM. 1 hit.
[Graphical view]
SUPFAMSSF101941. NAM. 1 hit.
PROSITEPS51005. NAC. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameNAC1_ARATH
AccessionPrimary (citable) accession number: Q0WV96
Secondary accession number(s): Q944A1, Q9MAN3
Entry history
Integrated into UniProtKB/Swiss-Prot: May 26, 2009
Last sequence update: May 26, 2009
Last modified: May 1, 2013
This is version 38 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

Arabidopsis thaliana

Arabidopsis thaliana: entries and gene names

SIMILARITY comments

Index of protein domains and families

to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents