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Protein

Probable galacturonosyltransferase 13

Gene

GAUT13

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at transcript leveli

Functioni

May be involved in pectin and/or xylans biosynthesis in cell walls.By similarity

Pathwayi: pectin biosynthesis

This protein is involved in the pathway pectin biosynthesis, which is part of Glycan metabolism.
View all proteins of this organism that are known to be involved in the pathway pectin biosynthesis and in Glycan metabolism.

GO - Molecular functioni

  • polygalacturonate 4-alpha-galacturonosyltransferase activity Source: TAIR

GO - Biological processi

  • cell wall pectin biosynthetic process Source: TAIR
  • pollen development Source: TAIR
  • pollen tube growth Source: TAIR
Complete GO annotation...

Keywords - Molecular functioni

Glycosyltransferase, Transferase

Keywords - Biological processi

Cell wall biogenesis/degradation

Enzyme and pathway databases

BioCyciARA:GQT-1213-MONOMER.
UniPathwayiUPA00845.

Protein family/group databases

CAZyiGT8. Glycosyltransferase Family 8.

Names & Taxonomyi

Protein namesi
Recommended name:
Probable galacturonosyltransferase 13 (EC:2.4.1.-)
Gene namesi
Name:GAUT13
Ordered Locus Names:At3g01040
ORF Names:T4P13.28
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

TAIRiAT3G01040.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 4040CytoplasmicSequence analysisAdd
BLAST
Transmembranei41 – 6121Helical; Signal-anchor for type II membrane proteinSequence analysisAdd
BLAST
Topological domaini62 – 533472LumenalSequence analysisAdd
BLAST

GO - Cellular componenti

  • Golgi apparatus Source: TAIR
  • Golgi membrane Source: UniProtKB-SubCell
  • integral component of membrane Source: UniProtKB-KW
  • pollen tube Source: TAIR
Complete GO annotation...

Keywords - Cellular componenti

Golgi apparatus, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 533533Probable galacturonosyltransferase 13PRO_0000392563Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi306 – 3061N-linked (GlcNAc...)Sequence analysis
Glycosylationi396 – 3961N-linked (GlcNAc...)Sequence analysis
Glycosylationi445 – 4451N-linked (GlcNAc...)Sequence analysis
Glycosylationi520 – 5201N-linked (GlcNAc...)Sequence analysis

Keywords - PTMi

Glycoprotein

Proteomic databases

PaxDbiQ0WV13.
PRIDEiQ0WV13.

PTM databases

iPTMnetiQ0WV13.

Expressioni

Tissue specificityi

Expressed in roots, inflorescences, siliques, leaves and stems.1 Publication

Gene expression databases

ExpressionAtlasiQ0WV13. baseline and differential.
GenevisibleiQ0WV13. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT3G01040.1.

Structurei

3D structure databases

ProteinModelPortaliQ0WV13.
SMRiQ0WV13. Positions 325-503.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyltransferase 8 family.Curated

Keywords - Domaini

Signal-anchor, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG410IJPU. Eukaryota.
ENOG410ZY1J. LUCA.
HOGENOMiHOG000239480.
InParanoidiQ0WV13.
KOiK13648.
OMAiRTWRKTN.
OrthoDBiEOG093606EQ.
PhylomeDBiQ0WV13.

Family and domain databases

Gene3Di3.90.550.10. 2 hits.
InterProiIPR029993. GAUT.
IPR002495. Glyco_trans_8.
IPR029044. Nucleotide-diphossugar_trans.
[Graphical view]
PANTHERiPTHR32116. PTHR32116. 1 hit.
PfamiPF01501. Glyco_transf_8. 1 hit.
[Graphical view]
SUPFAMiSSF53448. SSF53448. 2 hits.

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q0WV13-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MQLHISPSMR SITISSSNEF IDLMKIKVAA RHISYRTLFH TILILAFLLP
60 70 80 90 100
FVFILTAVVT LEGVNKCSSF DCFGRRLGPR LLGRIDDSEQ RLVRDFYKIL
110 120 130 140 150
NEVSTQEIPD GLKLPESFSQ LVSDMKNNHY DAKTFALVFR AMVEKFERDL
160 170 180 190 200
RESKFAELMN KHFAASSIPK GIHCLSLRLT DEYSSNAHAR RQLPSPELLP
210 220 230 240 250
VLSDNAYHHF VLATDNILAA SVVVSSAVQS SSKPEKIVFH VITDKKTYAG
260 270 280 290 300
MHSWFALNSV APAIVEVKSV HQFDWLTREN VPVLEAVESH NSIRNYYHGN
310 320 330 340 350
HIAGANLSET TPRTFASKLQ SRSPKYISLL NHLRIYLPEL FPNLDKVVFL
360 370 380 390 400
DDDIVIQKDL SPLWDIDLNG KVNGAVETCR GEDVWVMSKR LRNYFNFSHP
410 420 430 440 450
LIAKHLDPEE CAWAYGMNIF DLRTWRKTNI RETYHSWLKE NLKSNLTMWK
460 470 480 490 500
LGTLPPALIA FKGHVQPIDS SWHMLGLGYQ SKTNLENAKK AAVIHYNGQS
510 520 530
KPWLEIGFEH LRPFWTKYVN YSNDFIKNCH ILE
Length:533
Mass (Da):61,144
Last modified:September 5, 2006 - v1
Checksum:i743722DE9C4F1813
GO
Isoform 2 (identifier: Q0WV13-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     90-90: Missing.

Note: Derived from EST data. No experimental confirmation available.
Show »
Length:532
Mass (Da):61,016
Checksum:i6071BF28C5D4E9F5
GO

Sequence cautioni

The sequence AAF26170 differs from that shown. Reason: Erroneous initiation. Curated

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei90 – 901Missing in isoform 2. CuratedVSP_038821

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC008261 Genomic DNA. Translation: AAF26170.1. Different initiation.
CP002686 Genomic DNA. Translation: AEE73598.1.
CP002686 Genomic DNA. Translation: AEE73599.1.
AK226967 mRNA. Translation: BAE99035.1.
BT030321 mRNA. Translation: ABO09884.1.
RefSeqiNP_001118545.1. NM_001125073.1. [Q0WV13-2]
NP_186753.2. NM_110969.3. [Q0WV13-1]
UniGeneiAt.24420.
At.72100.

Genome annotation databases

EnsemblPlantsiAT3G01040.1; AT3G01040.1; AT3G01040. [Q0WV13-1]
GeneIDi821312.
KEGGiath:AT3G01040.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC008261 Genomic DNA. Translation: AAF26170.1. Different initiation.
CP002686 Genomic DNA. Translation: AEE73598.1.
CP002686 Genomic DNA. Translation: AEE73599.1.
AK226967 mRNA. Translation: BAE99035.1.
BT030321 mRNA. Translation: ABO09884.1.
RefSeqiNP_001118545.1. NM_001125073.1. [Q0WV13-2]
NP_186753.2. NM_110969.3. [Q0WV13-1]
UniGeneiAt.24420.
At.72100.

3D structure databases

ProteinModelPortaliQ0WV13.
SMRiQ0WV13. Positions 325-503.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT3G01040.1.

Protein family/group databases

CAZyiGT8. Glycosyltransferase Family 8.

PTM databases

iPTMnetiQ0WV13.

Proteomic databases

PaxDbiQ0WV13.
PRIDEiQ0WV13.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G01040.1; AT3G01040.1; AT3G01040. [Q0WV13-1]
GeneIDi821312.
KEGGiath:AT3G01040.

Organism-specific databases

TAIRiAT3G01040.

Phylogenomic databases

eggNOGiENOG410IJPU. Eukaryota.
ENOG410ZY1J. LUCA.
HOGENOMiHOG000239480.
InParanoidiQ0WV13.
KOiK13648.
OMAiRTWRKTN.
OrthoDBiEOG093606EQ.
PhylomeDBiQ0WV13.

Enzyme and pathway databases

UniPathwayiUPA00845.
BioCyciARA:GQT-1213-MONOMER.

Miscellaneous databases

PROiQ0WV13.

Gene expression databases

ExpressionAtlasiQ0WV13. baseline and differential.
GenevisibleiQ0WV13. AT.

Family and domain databases

Gene3Di3.90.550.10. 2 hits.
InterProiIPR029993. GAUT.
IPR002495. Glyco_trans_8.
IPR029044. Nucleotide-diphossugar_trans.
[Graphical view]
PANTHERiPTHR32116. PTHR32116. 1 hit.
PfamiPF01501. Glyco_transf_8. 1 hit.
[Graphical view]
SUPFAMiSSF53448. SSF53448. 2 hits.
ProtoNetiSearch...

Entry informationi

Entry nameiGAUTD_ARATH
AccessioniPrimary (citable) accession number: Q0WV13
Secondary accession number(s): B3H768, Q9MAB8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 23, 2010
Last sequence update: September 5, 2006
Last modified: September 7, 2016
This is version 70 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.