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Protein

Serine carboxypeptidase-like 40

Gene

SCPL40

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Probable carboxypeptidase.By similarity

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei229 – 2291By similarity
Active sitei420 – 4201By similarity
Active sitei473 – 4731By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Carboxypeptidase, Hydrolase, Protease

Enzyme and pathway databases

BioCyciARA:AT3G63470-MONOMER.

Protein family/group databases

ESTHERiarath-SCP40. Carboxypeptidase_S10.
MEROPSiS10.A41.

Names & Taxonomyi

Protein namesi
Recommended name:
Serine carboxypeptidase-like 40 (EC:3.4.16.-)
Gene namesi
Name:SCPL40
Ordered Locus Names:At3g63470
ORF Names:MAA21.100
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

TAIRiAT3G63470.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2424Sequence analysisAdd
BLAST
Chaini25 – 502478Serine carboxypeptidase-like 40PRO_0000274655Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi103 – 1031N-linked (GlcNAc...)Sequence analysis
Disulfide bondi136 ↔ 384By similarity
Glycosylationi187 – 1871N-linked (GlcNAc...)Sequence analysis
Disulfide bondi293 ↔ 307By similarity
Disulfide bondi331 ↔ 352By similarity
Glycosylationi333 – 3331N-linked (GlcNAc...)Sequence analysis
Glycosylationi373 – 3731N-linked (GlcNAc...)Sequence analysis
Glycosylationi436 – 4361N-linked (GlcNAc...)Sequence analysis

Keywords - PTMi

Disulfide bond, Glycoprotein

Proteomic databases

PaxDbiQ0WRX3.
PRIDEiQ0WRX3.

Expressioni

Tissue specificityi

Expressed in roots, leaves, flowers and siliques.1 Publication

Gene expression databases

GenevisibleiQ0WRX3. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT3G63470.1.

Structurei

3D structure databases

ProteinModelPortaliQ0WRX3.
SMRiQ0WRX3. Positions 79-497.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the peptidase S10 family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiKOG1282. Eukaryota.
COG2939. LUCA.
HOGENOMiHOG000198295.
InParanoidiQ0WRX3.
KOiK16297.
OMAiMTEECAV.
PhylomeDBiQ0WRX3.

Family and domain databases

Gene3Di3.40.50.1820. 1 hit.
InterProiIPR029058. AB_hydrolase.
IPR001563. Peptidase_S10.
IPR033124. Ser_caboxypep_his_AS.
IPR018202. Ser_caboxypep_ser_AS.
[Graphical view]
PANTHERiPTHR11802. PTHR11802. 2 hits.
PfamiPF00450. Peptidase_S10. 1 hit.
[Graphical view]
PRINTSiPR00724. CRBOXYPTASEC.
SUPFAMiSSF53474. SSF53474. 1 hit.
PROSITEiPS00560. CARBOXYPEPT_SER_HIS. 1 hit.
PS00131. CARBOXYPEPT_SER_SER. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q0WRX3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRKGQGYSYS VIASVLVLLC VVVSRIECSS QVHALSRLYL SKRGVGGSST
60 70 80 90 100
MDTSHFKAVK DLKPSSLRSA ANQEGLRKRD LIRRLPGQPP VSFDQYGGYV
110 120 130 140 150
TVNESAGRSF FYYFVEASKS KDSSPLLLWL NGGPGCSSLA YGALQELGPF
160 170 180 190 200
RVHSDGKTLF RNRYAWNNAA NVLFLESPAG VGFSYTNTTS DLEKHGDRNT
210 220 230 240 250
AADNYIFLVN WLERFPEYKG RDLYIAGESY AGHYVPQLAH TILLHHRSFF
260 270 280 290 300
NLKGILIGNA VINDETDLMG MYDFFESHAL ISEDSLARLK SNCDLKTESA
310 320 330 340 350
SVMTEECAVV SDQIDMDTYY LDIYNIYAPL CLNSTLTRRP KRGTTIREFD
360 370 380 390 400
PCSDHYVQAY LNRPEVQAAL HANATKLPYE WQPCSSVIKK WNDSPTTVIP
410 420 430 440 450
LIKELMGQGV RVWVFSGDTD GRIPVTSTKY SLKKMNLTAK TAWHPWYLGG
460 470 480 490 500
EVGGYTEEYK GKLTFATVRG AGHQVPSFQP KRSLSLFIHF LNDTPLPDTS

RY
Length:502
Mass (Da):56,240
Last modified:February 6, 2007 - v2
Checksum:iF9B4AC028F095A0A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL163818 Genomic DNA. Translation: CAB87800.1.
CP002686 Genomic DNA. Translation: AEE80489.1.
AY087589 mRNA. Translation: AAM65131.1.
AK228170 mRNA. Translation: BAF00126.1.
BT003126 mRNA. Translation: AAO24558.1.
PIRiT49188.
RefSeqiNP_191906.1. NM_116212.2.
UniGeneiAt.33917.
At.71216.

Genome annotation databases

EnsemblPlantsiAT3G63470.1; AT3G63470.1; AT3G63470.
GeneIDi825522.
GrameneiAT3G63470.1; AT3G63470.1; AT3G63470.
KEGGiath:AT3G63470.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL163818 Genomic DNA. Translation: CAB87800.1.
CP002686 Genomic DNA. Translation: AEE80489.1.
AY087589 mRNA. Translation: AAM65131.1.
AK228170 mRNA. Translation: BAF00126.1.
BT003126 mRNA. Translation: AAO24558.1.
PIRiT49188.
RefSeqiNP_191906.1. NM_116212.2.
UniGeneiAt.33917.
At.71216.

3D structure databases

ProteinModelPortaliQ0WRX3.
SMRiQ0WRX3. Positions 79-497.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT3G63470.1.

Protein family/group databases

ESTHERiarath-SCP40. Carboxypeptidase_S10.
MEROPSiS10.A41.

Proteomic databases

PaxDbiQ0WRX3.
PRIDEiQ0WRX3.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G63470.1; AT3G63470.1; AT3G63470.
GeneIDi825522.
GrameneiAT3G63470.1; AT3G63470.1; AT3G63470.
KEGGiath:AT3G63470.

Organism-specific databases

TAIRiAT3G63470.

Phylogenomic databases

eggNOGiKOG1282. Eukaryota.
COG2939. LUCA.
HOGENOMiHOG000198295.
InParanoidiQ0WRX3.
KOiK16297.
OMAiMTEECAV.
PhylomeDBiQ0WRX3.

Enzyme and pathway databases

BioCyciARA:AT3G63470-MONOMER.

Miscellaneous databases

PROiQ0WRX3.

Gene expression databases

GenevisibleiQ0WRX3. AT.

Family and domain databases

Gene3Di3.40.50.1820. 1 hit.
InterProiIPR029058. AB_hydrolase.
IPR001563. Peptidase_S10.
IPR033124. Ser_caboxypep_his_AS.
IPR018202. Ser_caboxypep_ser_AS.
[Graphical view]
PANTHERiPTHR11802. PTHR11802. 2 hits.
PfamiPF00450. Peptidase_S10. 1 hit.
[Graphical view]
PRINTSiPR00724. CRBOXYPTASEC.
SUPFAMiSSF53474. SSF53474. 1 hit.
PROSITEiPS00560. CARBOXYPEPT_SER_HIS. 1 hit.
PS00131. CARBOXYPEPT_SER_SER. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana."
    Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F.
    , Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
    Nature 408:820-822(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Full-length cDNA from Arabidopsis thaliana."
    Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., Feldmann K.A.
    Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
  4. "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."
    Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.
    , Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K.
    Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 174-502.
    Strain: cv. Columbia.
  5. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 269-502.
    Strain: cv. Columbia.
  6. "An expression and bioinformatics analysis of the Arabidopsis serine carboxypeptidase-like gene family."
    Fraser C.M., Rider L.W., Chapple C.
    Plant Physiol. 138:1136-1148(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY, TISSUE SPECIFICITY, NOMENCLATURE.

Entry informationi

Entry nameiSCP40_ARATH
AccessioniPrimary (citable) accession number: Q0WRX3
Secondary accession number(s): Q84WK3, Q9LY68
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 6, 2007
Last sequence update: February 6, 2007
Last modified: March 16, 2016
This is version 65 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Peptidase families
    Classification of peptidase families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.