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Protein

Protein UNCMA_24250

Gene

UNCMA_24250

Organism
Methanocella arvoryzae (strain DSM 22066 / NBRC 105507 / MRE50)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Enzyme and pathway databases

BioCyciUMET351160:GJT4-2485-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Protein UNCMA_24250UniRule annotation
Gene namesi
Ordered Locus Names:UNCMA_24250
ORF Names:RCIX292
OrganismiMethanocella arvoryzae (strain DSM 22066 / NBRC 105507 / MRE50)
Taxonomic identifieri351160 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanomicrobiaMethanocellalesMethanocellaceaeMethanocella
Proteomesi
  • UP000000663 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 198198Protein UNCMA_24250PRO_1000082712Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi351160.RCIX292.

Structurei

3D structure databases

ProteinModelPortaliQ0W787.
SMRiQ0W787. Positions 1-198.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini5 – 194190AMMECR1UniRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 AMMECR1 domain.UniRule annotation

Phylogenomic databases

eggNOGiarCOG01336. Archaea.
COG2078. LUCA.
HOGENOMiHOG000223417.
KOiK09141.

Family and domain databases

Gene3Di3.30.700.20. 1 hit.
HAMAPiMF_00645. AMMECR1.
InterProiIPR023473. AMMECR1.
IPR002733. AMMECR1_domain.
IPR027485. AMMECR1_N.
IPR027623. AmmeMemoSam_A.
IPR023472. Uncharacterised_MJ0810.
[Graphical view]
PANTHERiPTHR13016. PTHR13016. 1 hit.
PfamiPF01871. AMMECR1. 1 hit.
[Graphical view]
SUPFAMiSSF143447. SSF143447. 1 hit.
TIGRFAMsiTIGR04335. AmmeMemoSam_A. 1 hit.
TIGR00296. TIGR00296. 1 hit.
PROSITEiPS51112. AMMECR1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q0W787-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLSLEDGTLA VKTARNVIEE YVKTGNYSKF ELPKTFDRPG GVFVTLSINH
60 70 80 90 100
DLRGCIGYPY PMEDMSLGEA LADAAMSAAT RDPRFPRVHK NELDQIRVEV
110 120 130 140 150
TILGQPELLK CKPLERPHHI KIGRDGLIIE YGLHKGLLLP QVPVEWHWDA
160 170 180 190
TEFLENLCLK AGISPDAWVE EKAKIYTFGG QIFEETEPGG PVIEKKIA
Length:198
Mass (Da):22,197
Last modified:September 5, 2006 - v1
Checksum:iB3E2A0A5C353F860
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM114193 Genomic DNA. Translation: CAJ35756.1.
RefSeqiWP_012036743.1. NC_009464.1.

Genome annotation databases

EnsemblBacteriaiCAJ35756; CAJ35756; RCIX292.
GeneIDi5143717.
KEGGirci:RCIX292.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM114193 Genomic DNA. Translation: CAJ35756.1.
RefSeqiWP_012036743.1. NC_009464.1.

3D structure databases

ProteinModelPortaliQ0W787.
SMRiQ0W787. Positions 1-198.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi351160.RCIX292.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAJ35756; CAJ35756; RCIX292.
GeneIDi5143717.
KEGGirci:RCIX292.

Phylogenomic databases

eggNOGiarCOG01336. Archaea.
COG2078. LUCA.
HOGENOMiHOG000223417.
KOiK09141.

Enzyme and pathway databases

BioCyciUMET351160:GJT4-2485-MONOMER.

Family and domain databases

Gene3Di3.30.700.20. 1 hit.
HAMAPiMF_00645. AMMECR1.
InterProiIPR023473. AMMECR1.
IPR002733. AMMECR1_domain.
IPR027485. AMMECR1_N.
IPR027623. AmmeMemoSam_A.
IPR023472. Uncharacterised_MJ0810.
[Graphical view]
PANTHERiPTHR13016. PTHR13016. 1 hit.
PfamiPF01871. AMMECR1. 1 hit.
[Graphical view]
SUPFAMiSSF143447. SSF143447. 1 hit.
TIGRFAMsiTIGR04335. AmmeMemoSam_A. 1 hit.
TIGR00296. TIGR00296. 1 hit.
PROSITEiPS51112. AMMECR1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome of rice cluster I archaea -- the key methane producers in the rice rhizosphere."
    Erkel C., Kube M., Reinhardt R., Liesack W.
    Science 313:370-372(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 22066 / NBRC 105507 / MRE50.

Entry informationi

Entry nameiY2425_METAR
AccessioniPrimary (citable) accession number: Q0W787
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 20, 2008
Last sequence update: September 5, 2006
Last modified: November 11, 2015
This is version 48 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.