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Protein
Submitted name:

Methanocella arvoryzae MRE50 complete genome

Gene

RCIX1656

Organism
Methanocella arvoryzae (strain DSM 22066 / NBRC 105507 / MRE50)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Complete GO annotation...

Enzyme and pathway databases

BioCyciUMET351160:GJT4-1380-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Methanocella arvoryzae MRE50 complete genomeImported
Gene namesi
ORF Names:RCIX1656Imported
OrganismiMethanocella arvoryzae (strain DSM 22066 / NBRC 105507 / MRE50)Imported
Taxonomic identifieri351160 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanomicrobiaMethanocellalesMethanocellaceaeMethanocella
ProteomesiUP000000663 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi351160.RCIX1656.

Structurei

3D structure databases

ProteinModelPortaliQ0W406.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG2202.
KOiK03406.
OMAiANDITRQ.

Family and domain databases

InterProiIPR003660. HAMP_linker_domain.
IPR004089. MCPsignal_dom.
IPR001610. PAC.
IPR000014. PAS.
IPR000700. PAS-assoc_C.
IPR029151. Sensor-like.
[Graphical view]
PfamiPF00672. HAMP. 1 hit.
PF00015. MCPsignal. 1 hit.
PF13426. PAS_9. 2 hits.
[Graphical view]
SMARTiSM00304. HAMP. 1 hit.
SM00283. MA. 1 hit.
SM00086. PAC. 2 hits.
SM00091. PAS. 2 hits.
[Graphical view]
SUPFAMiSSF103190. SSF103190. 3 hits.
SSF55785. SSF55785. 2 hits.
TIGRFAMsiTIGR00229. sensory_box. 2 hits.
PROSITEiPS50111. CHEMOTAXIS_TRANSDUC_2. 1 hit.
PS50885. HAMP. 1 hit.
PS50113. PAC. 2 hits.
PS50112. PAS. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q0W406-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVKIDLRSIS VQLLVFILIV AIVPVVILTL ANNMTLTGIE SSVYKDKIDD
60 70 80 90 100
SAAIAAKTID GVVVEDGLIT DKMALDPGLI AAVKKDDRKA IKAIVDRYQK
110 120 130 140 150
DYPEFNMVTV TNTEAAVLAR ASNDVSGDKM SEVEVAAALK GTRTNEMDLI
160 170 180 190 200
SAAAIKNNGL DSYIAATKTQ EGLGIVSCVP IKDESGAIIG ALYTADLQNN
210 220 230 240 250
QNELVDQVGE ASEGYSTLFQ GDVRVCTNLK DASGNRIVGT KSSPEVAARV
260 270 280 290 300
LDKGETFEDL LTVNGIPMMV RYVPVKNGED KVVGMLFVGY DIRAMQSQIN
310 320 330 340 350
NSNMNAIIIG VILTIASIGV GFIIVRRITG PIKRLVKAAD SVAAGNLDAS
360 370 380 390 400
METGAKGGEV GQLTEAITKM VANIKERIAF NESILKAIND PMSVYDNERN
410 420 430 440 450
ITYMNDVAAK AIGVDPKAVI GKKCYDVYTS PACRTNCAVL ECWKRKEPVN
460 470 480 490 500
NFETTVKAAD GSEVWIRGNA SPIYDNHGRI IGGMELFKDI TRERADQQKI
510 520 530 540 550
REAQKEAQEK AVYSESILKS IKAIHLVLNS KFQIEYLNDA AEQYLGTKLA
560 570 580 590 600
ECKDKPISDL VSLKVRPDAP RSVLSTGQDL IGVEDVMVIV RSGKAIPIRL
610 620 630 640 650
DMSAMRDLSG KIIGVSFIAN DITRQQEAQE NLKAIIRTVN DVAGRVAAAA
660 670 680 690 700
QHSSEAAGQA MVSSRQISES ITQIAAGSQS QAKEVENISS LIQTISTDAR
710 720 730 740 750
DVSKGAQTAS NKMKEASEAT KKVDEASKLA MHKMADIRVS VDDSAAIIKD
760 770 780 790 800
LGEKSKQIGK IVDVINSIAS QTNLLALNAA IEAARAGEAG RGFAVVAEEV
810 820 830 840 850
RKLAEDSAKS TSQISDLISQ IREQTDRAVM SMDKGTAEVA SGSDVVAKAL
860 870 880 890 900
KSVEEISRLV DEVAEVALNV STATEKQVSS TMEIARAIEQ ISAVVEESAA
910 920 930 940
STEEVSASAE ESTSTMEETA NIAQQVLKMA EELKTEVNKL KVE
Length:943
Mass (Da):101,064
Last modified:September 5, 2006 - v1
Checksum:iCE83632484CA7E34
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM114193 Genomic DNA. Translation: CAJ36887.1.
RefSeqiWP_012035676.1. NC_009464.1.
YP_686213.1. NC_009464.1.

Genome annotation databases

EnsemblBacteriaiCAJ36887; CAJ36887; RCIX1656.
GeneIDi5145229.
KEGGirci:RCIX1656.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM114193 Genomic DNA. Translation: CAJ36887.1.
RefSeqiWP_012035676.1. NC_009464.1.
YP_686213.1. NC_009464.1.

3D structure databases

ProteinModelPortaliQ0W406.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi351160.RCIX1656.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAJ36887; CAJ36887; RCIX1656.
GeneIDi5145229.
KEGGirci:RCIX1656.

Phylogenomic databases

eggNOGiCOG2202.
KOiK03406.
OMAiANDITRQ.

Enzyme and pathway databases

BioCyciUMET351160:GJT4-1380-MONOMER.

Family and domain databases

InterProiIPR003660. HAMP_linker_domain.
IPR004089. MCPsignal_dom.
IPR001610. PAC.
IPR000014. PAS.
IPR000700. PAS-assoc_C.
IPR029151. Sensor-like.
[Graphical view]
PfamiPF00672. HAMP. 1 hit.
PF00015. MCPsignal. 1 hit.
PF13426. PAS_9. 2 hits.
[Graphical view]
SMARTiSM00304. HAMP. 1 hit.
SM00283. MA. 1 hit.
SM00086. PAC. 2 hits.
SM00091. PAS. 2 hits.
[Graphical view]
SUPFAMiSSF103190. SSF103190. 3 hits.
SSF55785. SSF55785. 2 hits.
TIGRFAMsiTIGR00229. sensory_box. 2 hits.
PROSITEiPS50111. CHEMOTAXIS_TRANSDUC_2. 1 hit.
PS50885. HAMP. 1 hit.
PS50113. PAC. 2 hits.
PS50112. PAS. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome of rice cluster I archaea -- the key methane producers in the rice rhizosphere."
    Erkel C., Kube M., Reinhardt R., Liesack W.
    Science 313:370-372(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: MRE50Imported.

Entry informationi

Entry nameiQ0W406_METAR
AccessioniPrimary (citable) accession number: Q0W406
Entry historyi
Integrated into UniProtKB/TrEMBL: September 5, 2006
Last sequence update: September 5, 2006
Last modified: June 24, 2015
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.