Reviewed, UniProtKB/Swiss-Prot Q0VTM5 (PYRB_ALCBS)

Names and origin

Protein names

Recommended name:
    Aspartate carbamoyltransferase
    EC=2.1.3.2
Alternative name(s):
    Aspartate transcarbamylase
      Short name=ATCase

Gene names

Name:	pyrB
Ordered Locus Names:	ABO_0035

Organism

Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) [Complete proteome] [HAMAP]

Taxonomic identifier

393595 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Oceanospirillales › Alcanivoracaceae › Alcanivorax

Protein attributes

Sequence length	337 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Inferred from homology.

General annotation (Comments)

Catalytic activity	Carbamoyl phosphate + L-aspartate = phosphate + N-carbamoyl-L-aspartate. HAMAP MF_00001
Pathway	Pyrimidine metabolism; UMP biosynthesis via de novo pathway; (S)-dihydroorotate from bicarbonate: step 2/3. HAMAP MF_00001
Sequence similarities	Belongs to the ATCase/OTCase family.

Ontologies

Keywords
Biological process	Pyrimidine biosynthesis
Molecular function	Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	'de novo' pyrimidine base biosynthetic process Inferred from electronic annotation. Source: InterPro cellular amino acid metabolic process Inferred from electronic annotation. Source: InterPro pyrimidine nucleotide biosynthetic process Inferred from electronic annotation. Source: HAMAP
Molecular function	amino acid binding Inferred from electronic annotation. Source: InterPro aspartate carbamoyltransferase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 337	337	Aspartate carbamoyltransferase HAMAP MF_00001		PRO_0000321065

Sequences

	Sequence		Length	Mass (Da)
	Q0VTM5-1 [UniParc]. Last modified September 5, 2006. Version 1. Checksum: DCC0DC0B2C9D3311	FASTA	337	36,423
	10 20 30 40 50 60 MTPTLAPSSR VQLTDSGKLR HFLTTEHLPR SLLEDILDTA ASFVDVGGRA IKKVPLLRGK 70 80 90 100 110 120 TVVNLFFESS TRTRSTFELA AQRLSADVLN LDIAKSATSK GETLLDTLRN LEAMAADMFV 130 140 150 160 170 180 VRHQDSGAPF FIANEVTPNV AVINAGDGRH AHPTQAMLDM YTIRHYKGGF EGLKVAIVGD 190 200 210 220 230 240 ILHSRVARSQ VHALNILGAD EVRLIGPKTL LPVDAEALGA TVFTDMAQGL KDVDVVIMLR 250 260 270 280 290 300 LQKERMDSAL LPSEAEFFRL YGLNNDKLLF AKEDAIVMHP GPINRGVEIA SEVADGPRSV 310 320 330 ILNQVTFGIA VRMAVMSMAI SGQDSDMSAA GGAHGQR

References

[1]

"Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis." Schneiker S., Martins dos Santos V.A.P., Bartels D., Bekel T., Brecht M., Buhrmester J., Chernikova T.N., Denaro R., Ferrer M., Gertler C., Goesmann A., Golyshina O.V., Kaminski F., Khachane A.N., Lang S., Linke B., McHardy A.C., Meyer F. , Nechitaylo T., Puehler A., Regenhardt D., Rupp O., Sabirova J.S., Selbitschka W., Yakimov M.M., Timmis K.N., Vorhoelter F.-J., Weidner S., Kaiser O., Golyshin P.N. Nat. Biotechnol. 24:997-1004(2006) [PubMed: 16878126] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBLGenBankDDBJ	AM286690 Genomic DNA. Translation: CAL15483.1.
RefSeq	YP_691755.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	Q0VTM5.
Genome annotation databases
GeneID	4211154.
GenomeReviews	Gene locus ABO_0035 in contig AM286690_GR.
KEGG	abo:ABO_0035.
NMPDR	fig|393595.12.peg.34.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	Q0VTM5.
OMA	YFAGPEE.
Enzyme and pathway databases
BioCyc	ABOR393595:ABO_0035-MON.
Family and domain databases
HAMAP	MF_00001. [Tree]
InterPro	IPR006132. Asp/Orn_carbamoyltranf_P_bd. IPR006130. Asp/Orn_carbamoylTrfase. IPR006131. Asp_carbamoyltransf_Asp/Orn_bd. IPR002082. Asp_carbamoyltransf_euk. [Graphical view]
Pfam	PF00185. OTCace. 1 hit. PF02729. OTCace_N. 1 hit. [Graphical view]
PRINTS	PR00100. AOTCASE. PR00101. ATCASE.
TIGRFAMs	TIGR00670. asp_carb_tr. 1 hit.
PROSITE	PS00097. CARBAMOYLTRANSFERASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

PYRB_ALCBS

Accession

Primary (citable) accession number: Q0VTM5

Entry history

Integrated into UniProtKB/Swiss-Prot:	February 26, 2008
Last sequence update:	September 5, 2006
Last modified:	November 3, 2009
This is version 31 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)