Q0VSK7 (Q0VSK7_ALCBS) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Alginate lyase EMBL CAL15841.1
EC=4.2.2.3 EMBL CAL15841.1

Gene names

Name:	algL EMBL CAL15841.1
Ordered Locus Names:	ABO_0393

Organism

Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) [Complete proteome] [HAMAP]

Taxonomic identifier

393595 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Oceanospirillales › Alcanivoracaceae › Alcanivorax

Protein attributes

Sequence length	347 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Lyase EMBL CAL15841.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	alginic acid catabolic process Inferred from electronic annotation. Source: InterPro
Cellular component	periplasmic space Inferred from electronic annotation. Source: InterPro
Molecular function	poly(beta-D-mannuronate) lyase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q0VSK7 [UniParc]. Last modified September 5, 2006. Version 1. Checksum: 33D7B33FF47EF1C4	FASTA	347	38,681
	10 20 30 40 50 60 MLVTGCSQAS LVPLFDSQPL DQVKPDVRAL NRCQAESQGY PPYPGQLKMG SKYDQGQASK 70 80 90 100 110 120 DVLDEKAARR YQSQVSAIYS YLAFLGQVTE YMRKPDPAIR AAAKECFSMA VASWAQAGAL 130 140 150 160 170 180 TQKDASKQGE AVRKWFLSAL AMNMMKAQAL TAWQVSEEQR DWLRLLADRV QIYATPRRQR 190 200 210 220 230 240 MDLYNNHDYW SSWAVMAAGL VLDEPARLSW AEQGYWLAIG QITPRNGGVV LPREAARGKR 250 260 270 280 290 300 AEEYHAFAIT PLILMAEAGT RNGLPLYEGD GQQLHALAAQ VVHFWAQDGK GVSFAQRQVA 310 320 330 340 IDDHKMAWWP VYAHRFPERL PLPAGDADRF GSRFTGGSLA GLWQATP

References

[1]

"Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis." Schneiker S., Martins dos Santos V.A.P., Bartels D., Bekel T., Brecht M., Buhrmester J., Chernikova T.N., Denaro R., Ferrer M., Gertler C., Goesmann A., Golyshina O.V., Kaminski F., Khachane A.N., Lang S., Linke B., McHardy A.C., Meyer F. , Nechitaylo T., Puehler A., Regenhardt D., Rupp O., Sabirova J.S., Selbitschka W., Yakimov M.M., Timmis K.N., Vorhoelter F.-J., Weidner S., Kaiser O., Golyshin P.N. Nat. Biotechnol. 24:997-1004(2006) [PubMed: 16878126] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	AM286690 Genomic DNA. Translation: CAL15841.1.
RefSeq	YP_692113.1. NC_008260.1.
3D structure databases
ProteinModelPortal	Q0VSK7.
ModBase	Search...
Protein-protein interaction databases
STRING	Q0VSK7.
Protein family/group databases
CAZy	PL5. Polysaccharide Lyase Family 5.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4213601.
GenomeReviews	Gene locus ABO_0393 in contig AM286690_GR.
KEGG	abo:ABO_0393.
NMPDR	fig|393595.12.peg.393.
PATRIC	20838417. VBIAlcBor124741_0414.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	NOG42597.
OMA	DYWAAWA.
ProtClustDB	PRK00325.
Family and domain databases
InterPro	IPR008397. Alginate_lyase_dom. IPR008929. Chondroitin_lyas. [Graphical view]
Gene3D	G3DSA:1.50.10.110. Alginate_lyase. 1 hit.
KO	K01729.
Pfam	PF05426. Alginate_lyase. 1 hit. [Graphical view]
SUPFAM	SSF48230. Chondroitin_lyas. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q0VSK7_ALCBS

Accession

Primary (citable) accession number: Q0VSK7

Entry history

Integrated into UniProtKB/TrEMBL:	September 5, 2006
Last sequence update:	September 5, 2006
Last modified:	December 14, 2011
This is version 33 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)