Reviewed,
UniProtKB/Swiss-Prot Q0VP19 (RNC_ALCBS)
Last modified
February 9, 2010.
Version 29.
History...
Clusters with 100%,
90%,
50% identity |
Documents (1) |
Third-party data |
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Names and origin
| Protein names | Recommended name: Ribonuclease 3 EC=3.1.26.3 Alternative name(s): Ribonuclease III Short name=RNase III | ||||
| Gene names |
| ||||
| Organism | Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) [Complete proteome] [HAMAP] | ||||
| Taxonomic identifier | 393595 [NCBI] | ||||
| Taxonomic lineage | Bacteria › Proteobacteria › Gammaproteobacteria › Oceanospirillales › Alcanivoracaceae › Alcanivorax |
Protein attributes
| Sequence length | 228 AA. |
| Sequence status | Complete. |
| Protein existence | Inferred from homology. |
General annotation (Comments)
| Function | Digests double-stranded RNA. Involved in the processing of ribosomal RNA precursors and of some mRNAs By similarity. HAMAP MF_00104 |
| Catalytic activity | Endonucleolytic cleavage to 5'-phosphomonoester. HAMAP MF_00104 |
| Subcellular location | Cytoplasm By similarity HAMAP MF_00104. |
| Sequence similarities | Contains 1 DRBM (double-stranded RNA-binding) domain. Contains 1 RNase III domain. |
Ontologies
| Keywords | |
|---|---|
| Cellular component | Cytoplasm |
| Ligand | RNA-binding |
| Molecular function | Endonuclease Hydrolase Nuclease |
| Technical term | Complete proteome |
| Gene Ontology (GO) | |
| Biological process | mRNA processing Inferred from electronic annotation. Source: HAMAP rRNA catabolic processInferred from electronic annotation. Source: InterPro rRNA processingInferred from electronic annotation. Source: HAMAP |
| Cellular component | cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell |
| Molecular function | double-stranded RNA binding Inferred from electronic annotation. Source: InterPro ribonuclease III activityInferred from electronic annotation. Source: HAMAP |
| Complete GO annotation... | |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 228 | 228 | Ribonuclease 3 HAMAP MF_00104 | PRO_1000075717 | |||||
Regions | |||||||||
| Domain | 5 – 128 | 124 | RNase III | ||||||
| Domain | 155 – 225 | 71 | DRBM | ||||||
Sequences
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References
| [1] | "Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis." Schneiker S., Martins dos Santos V.A.P., Bartels D., Bekel T., Brecht M., Buhrmester J., Chernikova T.N., Denaro R., Ferrer M., Gertler C., Goesmann A., Golyshina O.V., Kaminski F., Khachane A.N., Lang S., Linke B., McHardy A.C., Meyer F. Golyshin P.N.Nat. Biotechnol. 24:997-1004(2006) [PubMed: 16878126] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AM286690 Genomic DNA. Translation: CAL17079.1. |
| RefSeq | YP_693351.1. |
3D structure databases | |
| SMR | Q0VP19. Positions 4-223. |
| ModBase | Search... |
Protein-protein interaction databases | |
| STRING | Q0VP19. |
Genome annotation databases | |
| GeneID | 4212118. |
| GenomeReviews | Gene locus ABO_1631 in contig AM286690_GR. |
| KEGG | abo:ABO_1631. |
| NMPDR | fig|393595.12.peg.1633. |
Organism-specific databases | |
| CMR | Search... |
Phylogenomic databases | |
| eggNOG | COG0571. |
| HOGENOM | HBG744556. |
| OMA | ALTHKSF. |
| PhylomeDB | Q0VP19. |
Enzyme and pathway databases | |
| BioCyc | ABOR393595:ABO_1631-MONOMER. |
Family and domain databases | |
| HAMAP | MF_00104. RNase_III. [Tree] |
| InterPro | IPR001159. Ds-RNA_bd. IPR014720. dsRNA-bd-like. IPR000999. RNase_III. IPR011907. RNase_III_bac. [Graphical view] |
| Gene3D | G3DSA:3.30.160.20. dsRNA-bd-like. 1 hit. G3DSA:1.10.1520.10. RNase_III. 1 hit. |
| Pfam | PF00035. dsrm. 1 hit. PF00636. Ribonuclease_3. 1 hit. [Graphical view] |
| SMART | SM00358. DSRM. 1 hit. SM00535. RIBOc. 1 hit. [Graphical view] |
| TIGRFAMs | TIGR02191. RNaseIII. 1 hit. |
| PROSITE | PS50137. DS_RBD. 1 hit. PS00517. RNASE_3_1. 1 hit. PS50142. RNASE_3_2. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Entry information
| Entry name | RNC_ALCBS | ||||||||
| Accession | Primary (citable) accession number: Q0VP19 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation project | HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes) | ||||||||

Clusters with


