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Protein

Tetratricopeptide repeat protein 39C

Gene

Ttc39c

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Tetratricopeptide repeat protein 39C
Short name:
TPR repeat protein 39C
Gene namesi
Name:Ttc39c
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 18

Organism-specific databases

RGDi1585423 Ttc39c

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002941241 – 522Tetratricopeptide repeat protein 39CAdd BLAST522

Proteomic databases

PaxDbiQ0VGK2
PRIDEiQ0VGK2

Expressioni

Gene expression databases

BgeeiENSRNOG00000050949
ExpressionAtlasiQ0VGK2 baseline and differential
GenevisibleiQ0VGK2 RN

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000064542

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati254 – 287TPR 1Add BLAST34
Repeati292 – 325TPR 2Add BLAST34
Repeati424 – 457TPR 3Add BLAST34

Sequence similaritiesi

Belongs to the TTC39 family.Curated

Keywords - Domaini

Repeat, TPR repeat

Phylogenomic databases

eggNOGiKOG3783 Eukaryota
ENOG410XTBZ LUCA
GeneTreeiENSGT00390000009763
HOVERGENiHBG081333
InParanoidiQ0VGK2
PhylomeDBiQ0VGK2

Family and domain databases

Gene3Di1.25.40.10, 1 hit
InterProiView protein in InterPro
IPR019412 Iml2/TPR_39
IPR011990 TPR-like_helical_dom_sf
PANTHERiPTHR31859 PTHR31859, 1 hit
PfamiView protein in Pfam
PF10300 DUF3808, 1 hit
SUPFAMiSSF48452 SSF48452, 1 hit

Sequencei

Sequence statusi: Complete.

Q0VGK2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSFGASFVSF LNAMMTFEEE KMQLACDDLK TTEKLCESEE AGVIETIKNK
60 70 80 90 100
IKKNVDARKS TPSMVDRLQR QIIIADCQVY LAVLSFVKQE LSAYIKGGWI
110 120 130 140 150
LRKAWKIYNK CYVDINALQE LHQKTLTEEP LSSDAANDNH IVAEGVTEEA
160 170 180 190 200
LSRLKGAVSF GYGLFHLCIS MVPPNLLKII NLLGFPGDRL QGLSSLTYAS
210 220 230 240 250
ESKDMKAPLA TLALLWYHTV VRPFFALDGS DNKGGLDEAK AILLRKESAY
260 270 280 290 300
PNSSLFMFFK GRIQRLECQI NSALTSFHTA LELAVDQREI QHVCLYEIGW
310 320 330 340 350
CSMIELNFKD AFDSFERLKN ESRWSQCYYA YLTAVCQGAT GDVDGAQLIF
360 370 380 390 400
KEVQKLFKRK NNQIEQFSVK KAERFRKQTP TRALCVLASI EVLYLWKALP
410 420 430 440 450
NCSLPNLQRM SQACHEVDDS SVVGLKHLLL GAIHKCLGNS QDAVQFFQRA
460 470 480 490 500
AKDESCRQNN SYVQPYACYE LGCLLLDRAE TVARGRTLLL QAKEDFSGYD
510 520
FENRLHVRVH AALASLRELV PQ
Length:522
Mass (Da):58,978
Last modified:September 5, 2006 - v1
Checksum:i75B264DD58669D8A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC105623 mRNA Translation: AAI05624.1
RefSeqiNP_001070699.1, NM_001077231.1
UniGeneiRn.200952

Genome annotation databases

EnsembliENSRNOT00000073509; ENSRNOP00000064542; ENSRNOG00000050949
GeneIDi686179
KEGGirno:686179

Similar proteinsi

Entry informationi

Entry nameiTT39C_RAT
AccessioniPrimary (citable) accession number: Q0VGK2
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 10, 2007
Last sequence update: September 5, 2006
Last modified: April 25, 2018
This is version 59 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health