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Protein

Tetratricopeptide repeat protein 39C

Gene

Ttc39c

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Tetratricopeptide repeat protein 39C
Short name:
TPR repeat protein 39C
Gene namesi
Name:Ttc39c
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 18

Organism-specific databases

RGDi1585423. Ttc39c.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002941241 – 522Tetratricopeptide repeat protein 39CAdd BLAST522

Proteomic databases

PaxDbiQ0VGK2.
PRIDEiQ0VGK2.

Expressioni

Gene expression databases

BgeeiENSRNOG00000050949.
ExpressionAtlasiQ0VGK2. baseline and differential.
GenevisibleiQ0VGK2. RN.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000064542.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati254 – 287TPR 1Add BLAST34
Repeati292 – 325TPR 2Add BLAST34
Repeati424 – 457TPR 3Add BLAST34

Sequence similaritiesi

Belongs to the TTC39 family.Curated
Contains 3 TPR repeats.Curated

Keywords - Domaini

Repeat, TPR repeat

Phylogenomic databases

eggNOGiKOG3783. Eukaryota.
ENOG410XTBZ. LUCA.
GeneTreeiENSGT00390000009763.
HOVERGENiHBG081333.
InParanoidiQ0VGK2.
PhylomeDBiQ0VGK2.

Family and domain databases

Gene3Di1.25.40.10. 2 hits.
InterProiIPR019412. OMP_Iml2/TPR_39.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF10300. DUF3808. 1 hit.
[Graphical view]
SUPFAMiSSF48452. SSF48452. 1 hit.

Sequencei

Sequence statusi: Complete.

Q0VGK2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSFGASFVSF LNAMMTFEEE KMQLACDDLK TTEKLCESEE AGVIETIKNK
60 70 80 90 100
IKKNVDARKS TPSMVDRLQR QIIIADCQVY LAVLSFVKQE LSAYIKGGWI
110 120 130 140 150
LRKAWKIYNK CYVDINALQE LHQKTLTEEP LSSDAANDNH IVAEGVTEEA
160 170 180 190 200
LSRLKGAVSF GYGLFHLCIS MVPPNLLKII NLLGFPGDRL QGLSSLTYAS
210 220 230 240 250
ESKDMKAPLA TLALLWYHTV VRPFFALDGS DNKGGLDEAK AILLRKESAY
260 270 280 290 300
PNSSLFMFFK GRIQRLECQI NSALTSFHTA LELAVDQREI QHVCLYEIGW
310 320 330 340 350
CSMIELNFKD AFDSFERLKN ESRWSQCYYA YLTAVCQGAT GDVDGAQLIF
360 370 380 390 400
KEVQKLFKRK NNQIEQFSVK KAERFRKQTP TRALCVLASI EVLYLWKALP
410 420 430 440 450
NCSLPNLQRM SQACHEVDDS SVVGLKHLLL GAIHKCLGNS QDAVQFFQRA
460 470 480 490 500
AKDESCRQNN SYVQPYACYE LGCLLLDRAE TVARGRTLLL QAKEDFSGYD
510 520
FENRLHVRVH AALASLRELV PQ
Length:522
Mass (Da):58,978
Last modified:September 5, 2006 - v1
Checksum:i75B264DD58669D8A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC105623 mRNA. Translation: AAI05624.1.
RefSeqiNP_001070699.1. NM_001077231.1.
UniGeneiRn.200952.

Genome annotation databases

EnsembliENSRNOT00000073509; ENSRNOP00000064542; ENSRNOG00000050949.
GeneIDi686179.
KEGGirno:686179.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC105623 mRNA. Translation: AAI05624.1.
RefSeqiNP_001070699.1. NM_001077231.1.
UniGeneiRn.200952.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000064542.

Proteomic databases

PaxDbiQ0VGK2.
PRIDEiQ0VGK2.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000073509; ENSRNOP00000064542; ENSRNOG00000050949.
GeneIDi686179.
KEGGirno:686179.

Organism-specific databases

CTDi125488.
RGDi1585423. Ttc39c.

Phylogenomic databases

eggNOGiKOG3783. Eukaryota.
ENOG410XTBZ. LUCA.
GeneTreeiENSGT00390000009763.
HOVERGENiHBG081333.
InParanoidiQ0VGK2.
PhylomeDBiQ0VGK2.

Miscellaneous databases

PROiQ0VGK2.

Gene expression databases

BgeeiENSRNOG00000050949.
ExpressionAtlasiQ0VGK2. baseline and differential.
GenevisibleiQ0VGK2. RN.

Family and domain databases

Gene3Di1.25.40.10. 2 hits.
InterProiIPR019412. OMP_Iml2/TPR_39.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF10300. DUF3808. 1 hit.
[Graphical view]
SUPFAMiSSF48452. SSF48452. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiTT39C_RAT
AccessioniPrimary (citable) accession number: Q0VGK2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 10, 2007
Last sequence update: September 5, 2006
Last modified: September 7, 2016
This is version 51 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.