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Protein
Submitted name:

Synaptic nuclear envelope 1

Gene

Syne1

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Synaptic nuclear envelope 1Imported
Gene namesi
Name:Syne1Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Organism-specific databases

MGIiMGI:1927152. Syne1.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei892 – 91726HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Proteomic databases

PaxDbiQ0VGB8.
PeptideAtlasiQ0VGB8.
PRIDEiQ0VGB8.

Expressioni

Gene expression databases

BgeeiENSMUSG00000019769.
ExpressionAtlasiQ0VGB8. baseline and differential.
GenevisibleiQ0VGB8. MM.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000093587.

Structurei

3D structure databases

ProteinModelPortaliQ0VGB8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini890 – 94960KASHInterPro annotationAdd
BLAST

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG410IUP1. Eukaryota.
ENOG410YQV5. LUCA.
HOGENOMiHOG000120125.
HOVERGENiHBG056327.

Family and domain databases

InterProiIPR012315. KASH.
IPR018159. Spectrin/alpha-actinin.
IPR002017. Spectrin_repeat.
IPR030265. SYNE1.
[Graphical view]
PANTHERiPTHR11915:SF267. PTHR11915:SF267. 1 hit.
PfamiPF10541. KASH. 1 hit.
PF00435. Spectrin. 4 hits.
[Graphical view]
SMARTiSM01249. KASH. 1 hit.
SM00150. SPEC. 5 hits.
[Graphical view]
PROSITEiPS51049. KASH. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q0VGB8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVVAEDLHGP RMAEDSSVDA DLPDCDCDVS RVKKLKETLV AVQQLDKNMG
60 70 80 90 100
SLRTWLAHME SELAKPIVYD SCNSEEIQRK LNEQQELQRD IEKHSTGVAS
110 120 130 140 150
VLNLCEVLLH DCDACATDAE CDSIQQATRN LDRRWRNICA MSMERRLKIE
160 170 180 190 200
ETWRLWQKFL DDYSRFEDWL EVSERTAAFP SSSGVLYTVA KEELKKFEAF
210 220 230 240 250
QRQVHESLTQ LELINKQYRR LARENRTDSA CSLRQMVHGG NQRWDDLQKR
260 270 280 290 300
VTSILRRLKH FISQREEFET ARDSILVWLT EMDLQLTNIE HFSECDVQAK
310 320 330 340 350
IKQLKAFQQE ISLNHNKIEQ IIAQGEQLIE KSEPLDAAVI EEELDELRRY
360 370 380 390 400
CQEVFGRVER YHKKLIRLPL PDDHDLSDRE LDLEDSTALS DLRWQDPSAD
410 420 430 440 450
GMPSPQPSSN PSLSLPQPLR SERSGRDTPA SVDSIPLEWD HDYDLSRDLE
460 470 480 490 500
SASRTLPSED EEGEEDKEFY LRGAVGLSGD PSSLESQMRQ LDKALDDSRF
510 520 530 540 550
QIQQTANILR SKTPTGPDLD TSYKGYMKLL GECSGSIDSV RRLEHKLAEE
560 570 580 590 600
ESFPGFVNLN STETQTAGVI DRWELLQAQA MSKELRMKQN LQKWQQFNSD
610 620 630 640 650
LNNIWAWLGE TEEELDRLQH LALSTDIHTI ESHIKKLKEL QKAVDHRKAI
660 670 680 690 700
ILSINLCSSE FTQADSKESH DLQDRLSQMN GRWDRVCSLL EDWRGLLQDA
710 720 730 740 750
LMQCQEFHEM SHALLLMLEN IDRRKNEIVP IDSTLDPETL QDHHKQLMQI
760 770 780 790 800
KQELLKSQLR VASLQDMSRQ LLVNAEGSDC LEAKEKVHVI GNRLKLLLKE
810 820 830 840 850
VSHHIKDLEK LLDMSSSQQD LSSWSSADEL DTSGSVSPTS GRSTPNRQKS
860 870 880 890 900
PRGKCSLSQP GPSVSSPKSR STRDGSDSSR SDPRPERVGR AFLFRILRAA
910 920 930 940
LPFQLLLLLL IGLTCLVPMS EKDYSCALSN NFARSFHPML RYTNGPPPL
Length:949
Mass (Da):108,779
Last modified:September 5, 2006 - v1
Checksum:i40ABE338F614825E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC110428 mRNA. Translation: AAI10429.1.
RefSeqiNP_071310.2. NM_022027.2.
UniGeneiMm.331626.

Genome annotation databases

GeneIDi64009.
UCSCiuc007egr.2. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC110428 mRNA. Translation: AAI10429.1.
RefSeqiNP_071310.2. NM_022027.2.
UniGeneiMm.331626.

3D structure databases

ProteinModelPortaliQ0VGB8.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000093587.

Proteomic databases

PaxDbiQ0VGB8.
PeptideAtlasiQ0VGB8.
PRIDEiQ0VGB8.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi64009.
UCSCiuc007egr.2. mouse.

Organism-specific databases

CTDi23345.
MGIiMGI:1927152. Syne1.

Phylogenomic databases

eggNOGiENOG410IUP1. Eukaryota.
ENOG410YQV5. LUCA.
HOGENOMiHOG000120125.
HOVERGENiHBG056327.

Miscellaneous databases

ChiTaRSiSyne1. mouse.
SOURCEiSearch...

Gene expression databases

BgeeiENSMUSG00000019769.
ExpressionAtlasiQ0VGB8. baseline and differential.
GenevisibleiQ0VGB8. MM.

Family and domain databases

InterProiIPR012315. KASH.
IPR018159. Spectrin/alpha-actinin.
IPR002017. Spectrin_repeat.
IPR030265. SYNE1.
[Graphical view]
PANTHERiPTHR11915:SF267. PTHR11915:SF267. 1 hit.
PfamiPF10541. KASH. 1 hit.
PF00435. Spectrin. 4 hits.
[Graphical view]
SMARTiSM01249. KASH. 1 hit.
SM00150. SPEC. 5 hits.
[Graphical view]
PROSITEiPS51049. KASH. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ0VGB8_MOUSE
AccessioniPrimary (citable) accession number: Q0VGB8
Entry historyi
Integrated into UniProtKB/TrEMBL: September 5, 2006
Last sequence update: September 5, 2006
Last modified: September 7, 2016
This is version 72 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.