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Q0VDI3

- CE028_HUMAN

UniProt

Q0VDI3 - CE028_HUMAN

Protein

Transmembrane protein C5orf28

Gene

C5orf28

Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 60 (01 Oct 2014)
      Sequence version 1 (05 Sep 2006)
      Previous versions | rss
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    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Transmembrane protein C5orf28
    Gene namesi
    Name:C5orf28
    OrganismiHomo sapiens (Human)
    Taxonomic identifieri9606 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
    ProteomesiUP000005640: Chromosome 5

    Organism-specific databases

    HGNCiHGNC:26139. C5orf28.

    Subcellular locationi

    GO - Cellular componenti

    1. integral component of membrane Source: UniProtKB-KW

    Keywords - Cellular componenti

    Membrane

    Pathology & Biotechi

    Organism-specific databases

    PharmGKBiPA162380004.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 215215Transmembrane protein C5orf28PRO_0000281921Add
    BLAST

    Proteomic databases

    MaxQBiQ0VDI3.
    PaxDbiQ0VDI3.
    PRIDEiQ0VDI3.

    Expressioni

    Gene expression databases

    ArrayExpressiQ0VDI3.
    BgeeiQ0VDI3.
    CleanExiHS_C5orf28.
    GenevestigatoriQ0VDI3.

    Interactioni

    Protein-protein interaction databases

    BioGridi122166. 1 interaction.
    STRINGi9606.ENSP00000380270.

    Structurei

    3D structure databases

    ProteinModelPortaliQ0VDI3.
    ModBaseiSearch...
    MobiDBiSearch...

    Transmembrane

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Transmembranei77 – 9721HelicalSequence AnalysisAdd
    BLAST
    Transmembranei114 – 13421HelicalSequence AnalysisAdd
    BLAST
    Transmembranei178 – 19821HelicalSequence AnalysisAdd
    BLAST

    Family & Domainsi

    Keywords - Domaini

    Transmembrane, Transmembrane helix

    Phylogenomic databases

    eggNOGiNOG80546.
    HOGENOMiHOG000007036.
    HOVERGENiHBG097530.
    InParanoidiQ0VDI3.
    OMAiDNAVHCV.
    OrthoDBiEOG70ZZPD.
    PhylomeDBiQ0VDI3.
    TreeFamiTF323520.

    Family and domain databases

    InterProiIPR026572. C5orf28-like.
    [Graphical view]
    PANTHERiPTHR13628. PTHR13628. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q0VDI3-1 [UniParc]FASTAAdd to Basket

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    MASETEKTHA LLQTCSTESL ISSLGLGAFC LVADRLLQFS TIQQNDWLRA    50
    LSDNAVHCVI GMWSWAVVTG IKKKTDFGEI ILAGFLASVI DVDHFFLAGS 100
    MSLKAALTLP RRPFLHCSTV IPVVVLTLKF TMHLFKLKDS WCFLPWMLFI 150
    SWTSHHIRDG IRHGLWICPF GKTSPLPFWL YVIITSSLPH ICSFVMYLTG 200
    TRQMMSSKHG VRIDV 215
    Length:215
    Mass (Da):24,217
    Last modified:September 5, 2006 - v1
    Checksum:i7E18288823B3BDE6
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti86 – 861L → F in BAB15108. (PubMed:14702039)Curated

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK025310 mRNA. Translation: BAB15108.1.
    AK315466 mRNA. Translation: BAG37853.1.
    CH471119 Genomic DNA. Translation: EAW56061.1.
    BC063832 mRNA. Translation: AAH63832.1.
    BC013351 mRNA. Translation: AAH13351.1.
    BC119658 mRNA. Translation: AAI19659.1.
    BC119659 mRNA. Translation: AAI19660.1.
    CCDSiCCDS3945.1.
    RefSeqiNP_071928.2. NM_022483.4.
    XP_005248390.1. XM_005248333.2.
    XP_005248391.1. XM_005248334.2.
    XP_005248392.1. XM_005248335.2.
    XP_005248393.1. XM_005248336.2.
    XP_006714548.1. XM_006714485.1.
    XP_006714549.1. XM_006714486.1.
    UniGeneiHs.732093.

    Genome annotation databases

    EnsembliENST00000397080; ENSP00000380270; ENSG00000151881.
    ENST00000500337; ENSP00000426067; ENSG00000151881.
    ENST00000512085; ENSP00000422881; ENSG00000151881.
    GeneIDi64417.
    KEGGihsa:64417.
    UCSCiuc003jnv.4. human.

    Polymorphism databases

    DMDMi121940485.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK025310 mRNA. Translation: BAB15108.1 .
    AK315466 mRNA. Translation: BAG37853.1 .
    CH471119 Genomic DNA. Translation: EAW56061.1 .
    BC063832 mRNA. Translation: AAH63832.1 .
    BC013351 mRNA. Translation: AAH13351.1 .
    BC119658 mRNA. Translation: AAI19659.1 .
    BC119659 mRNA. Translation: AAI19660.1 .
    CCDSi CCDS3945.1.
    RefSeqi NP_071928.2. NM_022483.4.
    XP_005248390.1. XM_005248333.2.
    XP_005248391.1. XM_005248334.2.
    XP_005248392.1. XM_005248335.2.
    XP_005248393.1. XM_005248336.2.
    XP_006714548.1. XM_006714485.1.
    XP_006714549.1. XM_006714486.1.
    UniGenei Hs.732093.

    3D structure databases

    ProteinModelPortali Q0VDI3.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 122166. 1 interaction.
    STRINGi 9606.ENSP00000380270.

    Polymorphism databases

    DMDMi 121940485.

    Proteomic databases

    MaxQBi Q0VDI3.
    PaxDbi Q0VDI3.
    PRIDEi Q0VDI3.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENST00000397080 ; ENSP00000380270 ; ENSG00000151881 .
    ENST00000500337 ; ENSP00000426067 ; ENSG00000151881 .
    ENST00000512085 ; ENSP00000422881 ; ENSG00000151881 .
    GeneIDi 64417.
    KEGGi hsa:64417.
    UCSCi uc003jnv.4. human.

    Organism-specific databases

    CTDi 64417.
    GeneCardsi GC05M043395.
    HGNCi HGNC:26139. C5orf28.
    neXtProti NX_Q0VDI3.
    PharmGKBi PA162380004.
    GenAtlasi Search...

    Phylogenomic databases

    eggNOGi NOG80546.
    HOGENOMi HOG000007036.
    HOVERGENi HBG097530.
    InParanoidi Q0VDI3.
    OMAi DNAVHCV.
    OrthoDBi EOG70ZZPD.
    PhylomeDBi Q0VDI3.
    TreeFami TF323520.

    Miscellaneous databases

    ChiTaRSi C5orf28. human.
    GenomeRNAii 64417.
    NextBioi 66383.

    Gene expression databases

    ArrayExpressi Q0VDI3.
    Bgeei Q0VDI3.
    CleanExi HS_C5orf28.
    Genevestigatori Q0VDI3.

    Family and domain databases

    InterProi IPR026572. C5orf28-like.
    [Graphical view ]
    PANTHERi PTHR13628. PTHR13628. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
      Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
      , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
      Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Tissue: Colon.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Tissue: Lymph and PNS.

    Entry informationi

    Entry nameiCE028_HUMAN
    AccessioniPrimary (citable) accession number: Q0VDI3
    Secondary accession number(s): B2RDA6, Q9H6Z2
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: April 3, 2007
    Last sequence update: September 5, 2006
    Last modified: October 1, 2014
    This is version 60 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program
    DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Human chromosome 5
      Human chromosome 5: entries, gene names and cross-references to MIM

    External Data

    Dasty 3