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Q0VDI3

- CE028_HUMAN

UniProt

Q0VDI3 - CE028_HUMAN

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Protein
Transmembrane protein C5orf28
Gene
C5orf28
Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 1 out of 5 - Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Transmembrane protein C5orf28
Gene namesi
Name:C5orf28
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 5

Organism-specific databases

HGNCiHGNC:26139. C5orf28.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei77 – 9721Helical; Reviewed prediction
Add
BLAST
Transmembranei114 – 13421Helical; Reviewed prediction
Add
BLAST
Transmembranei178 – 19821Helical; Reviewed prediction
Add
BLAST

GO - Cellular componenti

  1. integral component of membrane Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Membrane

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA162380004.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 215215Transmembrane protein C5orf28
PRO_0000281921Add
BLAST

Proteomic databases

MaxQBiQ0VDI3.
PaxDbiQ0VDI3.
PRIDEiQ0VDI3.

Expressioni

Gene expression databases

ArrayExpressiQ0VDI3.
BgeeiQ0VDI3.
CleanExiHS_C5orf28.
GenevestigatoriQ0VDI3.

Interactioni

Protein-protein interaction databases

BioGridi122166. 1 interaction.
STRINGi9606.ENSP00000380270.

Structurei

3D structure databases

ProteinModelPortaliQ0VDI3.

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiNOG80546.
HOGENOMiHOG000007036.
HOVERGENiHBG097530.
InParanoidiQ0VDI3.
OMAiDNAVHCV.
OrthoDBiEOG70ZZPD.
PhylomeDBiQ0VDI3.
TreeFamiTF323520.

Family and domain databases

InterProiIPR026572. C5orf28-like.
[Graphical view]
PANTHERiPTHR13628. PTHR13628. 1 hit.

Sequencei

Sequence statusi: Complete.

Q0VDI3-1 [UniParc]FASTAAdd to Basket

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MASETEKTHA LLQTCSTESL ISSLGLGAFC LVADRLLQFS TIQQNDWLRA    50
LSDNAVHCVI GMWSWAVVTG IKKKTDFGEI ILAGFLASVI DVDHFFLAGS 100
MSLKAALTLP RRPFLHCSTV IPVVVLTLKF TMHLFKLKDS WCFLPWMLFI 150
SWTSHHIRDG IRHGLWICPF GKTSPLPFWL YVIITSSLPH ICSFVMYLTG 200
TRQMMSSKHG VRIDV 215
Length:215
Mass (Da):24,217
Last modified:September 5, 2006 - v1
Checksum:i7E18288823B3BDE6
GO

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti86 – 861L → F in BAB15108. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AK025310 mRNA. Translation: BAB15108.1.
AK315466 mRNA. Translation: BAG37853.1.
CH471119 Genomic DNA. Translation: EAW56061.1.
BC063832 mRNA. Translation: AAH63832.1.
BC013351 mRNA. Translation: AAH13351.1.
BC119658 mRNA. Translation: AAI19659.1.
BC119659 mRNA. Translation: AAI19660.1.
CCDSiCCDS3945.1.
RefSeqiNP_071928.2. NM_022483.4.
XP_005248390.1. XM_005248333.2.
XP_005248391.1. XM_005248334.2.
XP_005248392.1. XM_005248335.2.
XP_005248393.1. XM_005248336.2.
XP_006714548.1. XM_006714485.1.
XP_006714549.1. XM_006714486.1.
UniGeneiHs.732093.

Genome annotation databases

EnsembliENST00000397080; ENSP00000380270; ENSG00000151881.
ENST00000500337; ENSP00000426067; ENSG00000151881.
ENST00000512085; ENSP00000422881; ENSG00000151881.
GeneIDi64417.
KEGGihsa:64417.
UCSCiuc003jnv.4. human.

Polymorphism databases

DMDMi121940485.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AK025310 mRNA. Translation: BAB15108.1 .
AK315466 mRNA. Translation: BAG37853.1 .
CH471119 Genomic DNA. Translation: EAW56061.1 .
BC063832 mRNA. Translation: AAH63832.1 .
BC013351 mRNA. Translation: AAH13351.1 .
BC119658 mRNA. Translation: AAI19659.1 .
BC119659 mRNA. Translation: AAI19660.1 .
CCDSi CCDS3945.1.
RefSeqi NP_071928.2. NM_022483.4.
XP_005248390.1. XM_005248333.2.
XP_005248391.1. XM_005248334.2.
XP_005248392.1. XM_005248335.2.
XP_005248393.1. XM_005248336.2.
XP_006714548.1. XM_006714485.1.
XP_006714549.1. XM_006714486.1.
UniGenei Hs.732093.

3D structure databases

ProteinModelPortali Q0VDI3.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 122166. 1 interaction.
STRINGi 9606.ENSP00000380270.

Polymorphism databases

DMDMi 121940485.

Proteomic databases

MaxQBi Q0VDI3.
PaxDbi Q0VDI3.
PRIDEi Q0VDI3.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENST00000397080 ; ENSP00000380270 ; ENSG00000151881 .
ENST00000500337 ; ENSP00000426067 ; ENSG00000151881 .
ENST00000512085 ; ENSP00000422881 ; ENSG00000151881 .
GeneIDi 64417.
KEGGi hsa:64417.
UCSCi uc003jnv.4. human.

Organism-specific databases

CTDi 64417.
GeneCardsi GC05M043395.
HGNCi HGNC:26139. C5orf28.
neXtProti NX_Q0VDI3.
PharmGKBi PA162380004.
GenAtlasi Search...

Phylogenomic databases

eggNOGi NOG80546.
HOGENOMi HOG000007036.
HOVERGENi HBG097530.
InParanoidi Q0VDI3.
OMAi DNAVHCV.
OrthoDBi EOG70ZZPD.
PhylomeDBi Q0VDI3.
TreeFami TF323520.

Miscellaneous databases

ChiTaRSi C5orf28. human.
GenomeRNAii 64417.
NextBioi 66383.

Gene expression databases

ArrayExpressi Q0VDI3.
Bgeei Q0VDI3.
CleanExi HS_C5orf28.
Genevestigatori Q0VDI3.

Family and domain databases

InterProi IPR026572. C5orf28-like.
[Graphical view ]
PANTHERi PTHR13628. PTHR13628. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Colon.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Lymph and PNS.

Entry informationi

Entry nameiCE028_HUMAN
AccessioniPrimary (citable) accession number: Q0VDI3
Secondary accession number(s): B2RDA6, Q9H6Z2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 3, 2007
Last sequence update: September 5, 2006
Last modified: July 9, 2014
This is version 59 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 5
    Human chromosome 5: entries, gene names and cross-references to MIM

External Data

Dasty 3

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