Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

DNA ligase

Gene

SNOG_06940

Organism
Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) (Glume blotch fungus) (Septoria nodorum)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).UniRule annotation

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA biosynthetic process Source: InterPro
  2. DNA ligation involved in DNA repair Source: InterPro
  3. DNA recombination Source: UniProtKB-KW
  4. DNA replication Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LigaseUniRule annotation

Keywords - Biological processi

DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

Keywords - Ligandi

ATP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
ORF Names:SNOG_06940Imported
OrganismiPhaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) (Glume blotch fungus) (Septoria nodorum)Imported
Taxonomic identifieri321614 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaPezizomycotinaDothideomycetesPleosporomycetidaePleosporalesPleosporineaePhaeosphaeriaceaeParastagonospora
ProteomesiUP000001055: Unassembled WGS sequence

Family & Domainsi

Sequence similaritiesi

Belongs to the ATP-dependent DNA ligase family.UniRule annotation

Phylogenomic databases

InParanoidiQ0UMS4.
KOiK10747.
OrthoDBiEOG7TXKRG.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProiIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 3 hits.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q0UMS4-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAPKQATLGK FFGNPNANTS KQQSKLSFST KPKAQKIDAE IKDELESSTG
60 70 80 90 100
DVKAEPASTA EEIEVKQETS GEAMELDSSS SETGKKRPAK EEEEEDSEDE
110 120 130 140 150
PPMKRQRRKP SKDSEPSKKP KPAAKKSEKA SVKSNKQPTK VKAAVLEDDD
160 170 180 190 200
DEVATTALAS KGKKITGKSP TPALPDYDGS AKEEEEETLS SDEEPEEMKK
210 220 230 240 250
KAREKVQTAL KSNTKDPYPD WKAGDPVPYA ALCTTFSKIE MTTKRLEILA
260 270 280 290 300
HCSLFLRQVL RLTPSDLLPT TLLMINKLAA DYTGVELGIG ESLIKKAISE
310 320 330 340 350
STGRTLQHIN SDHNEIGDLG LVAAKSRSKQ PTMFKPKPLT IQGVHKGLLA
360 370 380 390 400
IATIEGQGAQ GRKVDGIKKL LSAADSHNAG KHIDIEENKG GPSESKFIVR
410 420 430 440 450
TLEGKLRLGL AERTVVVALA QAMIFHEMSQ NGKTPSTTDL GTAESILKTV
460 470 480 490 500
YSELPSYEVI IPAMLEHGIL QLRENCRLQP GVPLKPMLAK PTKSITEVLD
510 520 530 540 550
RFEGKDFTCE YKYDGERAQI HFVAHDADME MATTAPSAGK SDRGVSNIFS
560 570 580 590 600
RNSEDLSKKY PDILAKLPTW IKEGTKSFVL DCETVAWDMV EKKVLPFQQL
610 620 630 640 650
MTRKKEGFKV CVFAFDILYL NGEALVNKSF RERREHLQDA FIPILLEDSV
660 670 680 690 700
KASCEGLMVK MLDGPESSYE PSKRSQNWLK VKKDYLAGVG DSLDLVVLGA
710 720 730 740 750
YFGKGKRTSW YGAFLLACYN PNTQNYESVC NIGTGFSEAI LETLHEQLSE
760 770 780 790 800
IVIDKPKPFY THSVGNKDQP DVWFEPRYVW EVKTADLTLS PRYRAAADEV
810 820 830 840 850
SGGGKGISLR FPRFIKERDD KKPDQASTSK MIAEMYQRQE SVSKTKGPSA

DDDFEY
Length:856
Mass (Da):94,806
Last modified:February 5, 2008 - v2
Checksum:iCAD1185A69AB8B3D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CH445334 Genomic DNA. Translation: EAT85591.2.
RefSeqiXP_001797300.1. XM_001797248.1.

Genome annotation databases

EnsemblFungiiSNOT_06940; SNOT_06940; SNOG_06940.
GeneIDi5974190.
KEGGipno:SNOG_06940.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CH445334 Genomic DNA. Translation: EAT85591.2.
RefSeqiXP_001797300.1. XM_001797248.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiSNOT_06940; SNOT_06940; SNOG_06940.
GeneIDi5974190.
KEGGipno:SNOG_06940.

Phylogenomic databases

InParanoidiQ0UMS4.
KOiK10747.
OrthoDBiEOG7TXKRG.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProiIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 3 hits.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Dothideomycete-plant interactions illuminated by genome sequencing and EST analysis of the wheat pathogen Stagonospora nodorum."
    Hane J.K., Lowe R.G.T., Solomon P.S., Tan K.-C., Schoch C.L., Spatafora J.W., Crous P.W., Kodira C.D., Birren B.W., Galagan J.E., Torriani S.F.F., McDonald B.A., Oliver R.P.
    Plant Cell 19:3347-3368(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: SN15 / ATCC MYA-4574 / FGSC 10173Imported.

Entry informationi

Entry nameiQ0UMS4_PHANO
AccessioniPrimary (citable) accession number: Q0UMS4
Entry historyi
Integrated into UniProtKB/TrEMBL: September 5, 2006
Last sequence update: February 5, 2008
Last modified: January 7, 2015
This is version 56 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.