Q0TU39 (Q0TU39_CLOP1) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Polysaccharide lyase, family 8 EMBL ABG84856.1

Gene names

Ordered Locus Names:

CPF_0394

Organism

Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) [Complete proteome] [HAMAP]

Taxonomic identifier

195103 [NCBI]

Taxonomic lineage

Bacteria › Firmicutes › Clostridia › Clostridiales › Clostridiaceae › Clostridium

Protein attributes

Sequence length	1003 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Cellular component	Cell wall RuleBase RU000373 Secreted
Molecular function	Lyase EMBL ABG84856.1
PTM	Peptidoglycan-anchor RuleBase RU000373
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro
Cellular component	cell surface Inferred from electronic annotation. Source: InterPro cell wall Inferred from electronic annotation. Source: UniProtKB-KW extracellular region Inferred from electronic annotation. Source: InterPro
Molecular function	carbohydrate binding Inferred from electronic annotation. Source: InterPro carbon-oxygen lyase activity, acting on polysaccharides Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q0TU39 [UniParc]. Last modified September 5, 2006. Version 1. Checksum: 879E60D419ADE737	FASTA	1,003	113,443
	10 20 30 40 50 60 MKESRKKLNR LISTAIVSCM VMGASYENVL ALENKSQNNS EKVVKYDNEA EYIKNIRLRW 70 80 90 100 110 120 KEDLVGNSSL DTSNATISKK IISYTNNTDK LVAKLNMDPN AQWLWEDLKD YKQNPARITS 130 140 150 160 170 180 MFNNLVTMSM AYSLPNNKYY KNEDLKNKII YSLDWINKNA YNENIDQYGN WWDWMIGIPA 190 200 210 220 230 240 RLNNIVVLMY DDLTEEQVKN YMNAIQKFLP SIEPGSKYHT GANLADVCMN KLLQGVNEND 250 260 270 280 290 300 PEKIKEASED IVGVFDYVTS GDGFYKDGSY LQHGMVAYTG SYGNVLIEKI SNIMFLLEKT 310 320 330 340 350 360 PWSIKSESKD NVYKWIFESF NPIIYKGYVM DMVRGRAISR YNANGYLQAS GIIEGMIKIG 370 380 390 400 410 420 MISDGDKASE INALVKKWAT EAKSVLDFGA RFKSINVIGE FYGIMNNDNI KPLEEGDKHY 430 440 450 460 470 480 ALNSMDKTVH KRENFALGIS RSSSRISKYE FMNKENLTPW FQGDGMTYLF NNDLNQFSGN 490 500 510 520 530 540 FWATVDPYRM PGTTVDTRKR EPKEILPGLD PGASQQNEIY YELGKSNWSG GSKLGAYGVA 550 560 570 580 590 600 GMEIDNKYDS LKAKKSWFMF DDEIVALGSG ITNPEDFETE TIVENRKIKS DGSNKFIVDG 610 620 630 640 650 660 KERVSKLKEK DKVDNAKWAY LEGNVSGSNI GYYFPEGANI NLIKDEREGN WINVNSSKPE 670 680 690 700 710 720 ADKVVKDNYL TMYIDHGKAI KDQKYSYVLL PNKTEDKVKE YSENPNVEII QNDDVAHSVK 730 740 750 760 770 780 HKKLNIEAAN FWKEGKNTAG NITSTGKSSI IIKENKDNTL SIAVSDPTFL EKNLSIEINK 790 800 810 820 830 840 PAMEVIKSDK RISNINLENG KIKFDANTEN LSGAPLELLV KLGDKNNGNN ENNNEIKNEA 850 860 870 880 890 900 PVIEGEDANL FVGDKWDKSL HKLKAKDKED GDLTKNIKIK DNQIPLNDQF EVTKPGTYPV 910 920 930 940 950 960 TFEVSDNNGK KAEKKLNVLV KEKEENKPEN KPENQENKPE IKPEDQENQS TKPESEENKG 970 980 990 1000 ENPQANNNTE KLPNTGGASN LSLGAIGVLL ATVGTMFTKK RKK

References

[1]

"Skewed genomic variability in strains of the toxigenic bacterial pathogen, Clostridium perfringens." Myers G.S.A., Rasko D.A., Cheung J.K., Ravel J., Seshadri R., DeBoy R.T., Ren Q., Varga J., Awad M.M., Brinkac L.M., Daugherty S.C., Haft D.H., Dodson R.J., Madupu R., Nelson W.C., Rosovitz M.J., Sullivan S.A., Khouri H. , Dimitrov G.I., Watkins K.L., Mulligan S., Benton J., Radune D., Fisher D.J., Atkins H.S., Hiscox T., Jost B.H., Billington S.J., Songer J.G., McClane B.A., Titball R.W., Rood J.I., Melville S.B., Paulsen I.T. Genome Res. 16:1031-1040(2006) [PubMed: 16825665] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000246 Genomic DNA. Translation: ABG84856.1.
RefSeq	YP_694851.1. NC_008261.1.
3D structure databases
ProteinModelPortal	Q0TU39.
ModBase	Search...
Protein-protein interaction databases
STRING	Q0TU39.
Protein family/group databases
CAZy	PL8. Polysaccharide Lyase Family 8.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4203299.
GenomeReviews	Gene locus CPF_0394 in contig CP000246_GR.
KEGG	cpf:CPF_0394.
PATRIC	19483090. VBICloPer106549_0373.
TIGR	CPF_0394.
Phylogenomic databases
eggNOG	NOG04835.
HOGENOM	HBG061303.
OMA	TKTYRNI.
ProtClustDB	CLSK762467.
Family and domain databases
InterPro	IPR011080. Big_3. IPR008929. Chondroitin_lyas. IPR011013. Glyco_hydro-type_carb-bd. IPR014718. Glyco_hydro-type_carb-bd_sub. IPR019948. Gram-positive_anchor. IPR019931. LPXTG-motif_cell_wall_anchor. IPR011071. Lyase_8-like_C. IPR012970. Lyase_8_alpha_N. IPR004103. Lyase_8_C. IPR003159. Lyase_8_central_dom. IPR012329. Lyase_8_N. IPR001899. Surface_protein_Gram_pos_cocci. [Graphical view]
Gene3D	G3DSA:2.70.98.10. Glyco_hydro_42_D5. 1 hit. G3DSA:2.60.220.10. Lyase_8_C. 1 hit. G3DSA:1.50.10.100. Lyase_8_N. 1 hit.
Pfam	PF07523. Big_3. 1 hit. PF00746. Gram_pos_anchor. 1 hit. PF02278. Lyase_8. 1 hit. PF02884. Lyase_8_C. 1 hit. PF08124. Lyase_8_N. 1 hit. [Graphical view]
SUPFAM	SSF48230. Chondroitin_lyas. 1 hit. SSF74650. Gal_mut_like. 1 hit. SSF49863. Lyase_like_C. 1 hit.
TIGRFAMs	TIGR01167. LPXTG_anchor. 1 hit.
PROSITE	PS50847. GRAM_POS_ANCHORING. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q0TU39_CLOP1

Accession

Primary (citable) accession number: Q0TU39

Entry history

Integrated into UniProtKB/TrEMBL:	September 5, 2006
Last sequence update:	September 5, 2006
Last modified:	January 25, 2012
This is version 43 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)