Q0TQS9 (Q0TQS9_CLOP1) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Glycosyl hydrolase, family 25 EMBL ABG84630.1

Gene names

Ordered Locus Names:

CPF_1568

Organism

Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) [Complete proteome] [HAMAP]

Taxonomic identifier

195103 [NCBI]

Taxonomic lineage

Bacteria › Firmicutes › Clostridia › Clostridiales › Clostridiaceae › Clostridium

Protein attributes

Sequence length	342 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Hydrolase EMBL ABG84630.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	cell wall macromolecule catabolic process Inferred from electronic annotation. Source: InterPro peptidoglycan catabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	cation binding Inferred from electronic annotation. Source: InterPro lysozyme activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q0TQS9 [UniParc]. Last modified September 5, 2006. Version 1. Checksum: 323666736F05F2B3	FASTA	342	38,688
	10 20 30 40 50 60 MQSRNNNNLK GIDVSNWKGN INFESVKNDG VEVVYIKATE GNYFKDKYAK QNYEGAKEQG 70 80 90 100 110 120 LSVGFYHFFR ANKGAKDQAN FFIDYLNEIG AVNYDCKLAL DIETTEGVGA RDLTSMCIEF 130 140 150 160 170 180 LEEVKRLTGK EVVVYTYTSF SNNNLDSRLS NYPVWIAHYG VNTPGANNIW SEWVGFQYSE 190 200 210 220 230 240 NGSVDGVSGG CDMNEFTEEI FIDSSNFNLD NATTKNVSTK LNIRAKGTTN SKVIGSIPAN 250 260 270 280 290 300 ETFKIKWVDE DYLGWYYVEY NGIVGYVNAD YVEKLQMATT HNVSTFLNVR EEGSLNSRIV 310 320 330 340 DKINAGDIFR IDWVDSDFIG WYRVTTKNGK VGFVNSEFVK KI

References

[1]

"Skewed genomic variability in strains of the toxigenic bacterial pathogen, Clostridium perfringens." Myers G.S.A., Rasko D.A., Cheung J.K., Ravel J., Seshadri R., DeBoy R.T., Ren Q., Varga J., Awad M.M., Brinkac L.M., Daugherty S.C., Haft D.H., Dodson R.J., Madupu R., Nelson W.C., Rosovitz M.J., Sullivan S.A., Khouri H. , Dimitrov G.I., Watkins K.L., Mulligan S., Benton J., Radune D., Fisher D.J., Atkins H.S., Hiscox T., Jost B.H., Billington S.J., Songer J.G., McClane B.A., Titball R.W., Rood J.I., Melville S.B., Paulsen I.T. Genome Res. 16:1031-1040(2006) [PubMed: 16825665] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000246 Genomic DNA. Translation: ABG84630.1.
RefSeq	YP_696011.1. NC_008261.1.
3D structure databases
ProteinModelPortal	Q0TQS9.
ModBase	Search...
Protein-protein interaction databases
STRING	Q0TQS9.
Protein family/group databases
CAZy	GH25. Glycoside Hydrolase Family 25.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4201671.
GenomeReviews	Gene locus CPF_1568 in contig CP000246_GR.
KEGG	cpf:CPF_1568.
PATRIC	19485394. VBICloPer106549_1517.
TIGR	CPF_1568.
Phylogenomic databases
eggNOG	COG3757.
HOGENOM	HBG061694.
OMA	LCLGTNQ.
ProtClustDB	CLSK566944.
Family and domain databases
InterPro	IPR002053. Glyco_hydro_25. IPR018077. Glyco_hydro_fam25_subgr. IPR013781. Glyco_hydro_subgr_catalytic. IPR017853. Glycoside_hydrolase_SF. IPR003646. SH3-like_bac. IPR013247. SH3_3. [Graphical view]
Gene3D	G3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit.
Pfam	PF01183. Glyco_hydro_25. 1 hit. PF08239. SH3_3. 2 hits. [Graphical view]
SMART	SM00641. Glyco_25. 1 hit. SM00287. SH3b. 2 hits. [Graphical view]
SUPFAM	SSF51445. Glyco_hydro_cat. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q0TQS9_CLOP1

Accession

Primary (citable) accession number: Q0TQS9

Entry history

Integrated into UniProtKB/TrEMBL:	September 5, 2006
Last sequence update:	September 5, 2006
Last modified:	December 14, 2011
This is version 32 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)