Fibronectin type III domain protein - Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A)

Preferred order of sections

Names and origin

Protein names

Submitted name:
Fibronectin type III domain protein EMBL ABG82552.1

Gene names

Ordered Locus Names:

CPF_2129

Organism

Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) [Complete proteome] [HAMAP]

Taxonomic identifier

195103 [NCBI]

Taxonomic lineage

Bacteria › Firmicutes › Clostridia › Clostridiales › Clostridiaceae › Clostridium

Protein attributes

Sequence length	1479 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Ligand	Calcium PDB 2VMG PDB 2VMH PDB 2VMI Metal-binding PDB 2VMG PDB 2VMH PDB 2VMI
Technical term	3D-structure PDB 2VMG PDB 2VMH PDB 2VMI Complete proteome
Gene Ontology (GO)
Biological process	polysaccharide catabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	hydrolase activity, hydrolyzing O-glycosyl compounds Inferred from electronic annotation. Source: InterPro metal ion binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Sites

Metal binding

989

1

Calcium PDB 2VMG PDB 2VMH PDB 2VMI

Metal binding

1032

1

Calcium; via carbonyl oxygen PDB 2VMG PDB 2VMH PDB 2VMI

Metal binding

1035

1

Calcium PDB 2VMG PDB 2VMH PDB 2VMI

Metal binding

1036

1

Calcium; via carbonyl oxygen PDB 2VMG PDB 2VMH PDB 2VMI

Metal binding

1040

1

Calcium PDB 2VMG PDB 2VMH PDB 2VMI

Sequences

Sequence

Length

Mass (Da)

Tools

Q0TP83 [UniParc].

Last modified September 5, 2006. Version 1.
Checksum: 9AD6A044F2EA95F0
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FASTA

1,479

165,148

        10         20         30         40         50         60 
MKRKFLKKIA LIVSLMVVGQ SVYTFAKSSR FNEVEKSTLN ENIDLDKLAL WYDEPATNWE 

        70         80         90        100        110        120 
NEALPIGNGY MGGMIFGSVA SERIQYNEKT LWSGGPGAWE GYNGGNKEGA WEAVQEIRKI 

       130        140        150        160        170        180 
LAEGGTPSND LYQRVCGDQR AYGAYQNFGD IFLDFKSHEE SKVTNYRREL NIEESLSTVK 

       190        200        210        220        230        240 
YNYKGVNYER EYFCSYPDNV MVIKLKADKA SSLNVDVRNE GAHNGKNLSV ENNTLILSGA 

       250        260        270        280        290        300 
IEDNGMKYES QIKVINTGGS IQDKEDRISV ENADEITIIM SAGTDYINEY PTYKGEDPHS 

       310        320        330        340        350        360 
AVTERINNAV NLGYDELKSR HIEDYKNLFD RVNLNLGELK LDKPTDEMLN EYKTNQSNSL 

       370        380        390        400        410        420 
ETLFFQYGRY LLISSSREGS LPANLQGVWN NSNNPPWSSD YHFNVNIQMN YWPAEVANLS 

       430        440        450        460        470        480 
ETAIPLVEYI ESLREPGRKT AEMHCGIEGA MENKNGWTVN TMNNPFGFTA MGWEFDWGWA 

       490        500        510        520        530        540 
PTSNAWISQN LWEHYNFTDD KDYLRENIYP IMKEAAQFWT QFLVEYTHSD GKTYLVSSPS 

       550        560        570        580        590        600 
YSPEHGPRTV GTTFDQELIW QLFTDTIKAS ETLGIDEEFR AELENKRERL LKPQIGKHGQ 

       610        620        630        640        650        660 
VQEWKDDIDD PNNNHRHISH LVGLYPGTQI NQKDTPELYE AAKVTMNHRG DGGTGWSKAN 

       670        680        690        700        710        720 
KINLWARLLD GDRAHRLLEN QLTTSTLENL FDTHPPFQID GNMGAVSGMA EMLVQSHLGT 

       730        740        750        760        770        780 
INPLPALPTA WEDGSFDGLK ARGNFEISAN WNNNSLNLLK IKSGSGNDCY LEYPGITEAI 

       790        800        810        820        830        840 
ITDANGNKIT PEVVSENVVK FPTEVNGEYK VEGMPMEKPE KVNGLKALRN GDNSVSLKWN 

       850        860        870        880        890        900 
KTKFAEGYDV YRKGEGDFEL IAEDVKTEEF IDENAPLNDS YSYLYYVVAK NSEGLGEASE 

       910        920        930        940        950        960 
KVAVETSVYL SELEWKSAST GYGEIQKDAS CDGNTITLKG ENGEKVSYDK GIGTHAHSEI 

       970        980        990       1000       1010       1020 
VYSLEGLDYY DYFETFVGVD QEMAGTVASI SFEVYLDNEK VFDSGLMTGD TTQKHVKVPI 

      1030       1040       1050       1060       1070       1080 
AGKNTLKLVV KDGGDSIGSD HGSFGDAKLT KVHAASNADL KSLNINGNPL EEFNGSKYEY 

      1090       1100       1110       1120       1130       1140 
SYDLKKGENL QNLNVEAEAF TSEAKIEITK PEELPGEAVV RVTSKDETMH KEYRVLINPY 

      1150       1160       1170       1180       1190       1200 
VIVEESIIAY YNFENSSNLG EDSSKNSFHG EVNGTVTQGE SKDGKAANFG DGYISVESND 

      1210       1220       1230       1240       1250       1260 
SLKLDDNLVI ETEVYLDEYT NYWQKIAQKI NNGTGKGGFL IDVSPEGKLR FHAEGSITQF 

      1270       1280       1290       1300       1310       1320 
ISNKAIPLNE WTNIKVIFEH SKGEASIYIN GELDKTVKPS SPLEVSDLPL IIGADSNGSD 

      1330       1340       1350       1360       1370       1380 
KLKGKMNNLT ISSIERRVAS SNVSLSDISI NGETMEGFKK DVFDYEIDLE EGTNIVPEIT 

      1390       1400       1410       1420       1430       1440 
ATSEDSNATI EIKNAEILPG VSKIKVIAED GTESIYTINL NIKVKNPLKA DFNKNGEIDL 

      1450       1460       1470 
GDLSMVSKYF GSNNSDFDLD GDGLVGEYEI NFVSSELLK

« Hide

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Skewed genomic variability in strains of the toxigenic bacterial pathogen, Clostridium perfringens." Myers G.S.A., Rasko D.A., Cheung J.K., Ravel J., Seshadri R., DeBoy R.T., Ren Q., Varga J., Awad M.M., Brinkac L.M., Daugherty S.C., Haft D.H., Dodson R.J., Madupu R., Nelson W.C., Rosovitz M.J., Sullivan S.A., Khouri H. Paulsen I.T. Genome Res. 16:1031-1040(2006) [PubMed: 16825665] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[2]	"Divergent modes of glycan recognition by a new family of carbohydrate-binding modules." Gregg K.J., Finn R., Abbott D.W., Boraston A.B. J. Biol. Chem. 283:12604-12613(2008) [PubMed: 18292090] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (1.50 ANGSTROMS) OF 900-1050 IN COMPLEX WITH CALCIUM.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

CP000246 Genomic DNA. Translation: ABG82552.1.

RefSeq

YP_696557.1. NC_008261.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
2VMG	X-ray	1.90	A	898-1050	[»]
2VMH	X-ray	1.50	A	900-1050	[»]
2VMI	X-ray	1.70	A	900-1050	[»]

ProteinModelPortal

Q0TP83.

SMR

Q0TP83. Positions 904-1050.

ModBase

Search...

Protein-protein interaction databases

STRING

Q0TP83.

Protein family/group databases

CAZy

CBM51. Carbohydrate-Binding Module Family 51.
GH95. Glycoside Hydrolase Family 95.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

GeneID

4200982.

GenomeReviews

Gene locus CPF_2129 in contig CP000246_GR.

KEGG

cpf:CPF_2129.

PATRIC

19486510. VBICloPer106549_2073.

TIGR

CPF_2129.

Phylogenomic databases

eggNOG

NOG04067.

HOGENOM

HBG061609.

OMA

EWKDDID.

ProtClustDB

CLSK519263.

Family and domain databases

InterPro

IPR008928. 6-hairpin_glycosidase-like.
IPR012341. 6hp_glycosidase.
IPR016134. Cellulos_enz_dockerin_1.
IPR002105. Cellulos_enz_dockerin_1_Ca-bd.
IPR008985. ConA-like_lec_gl.
IPR013320. ConA-like_subgrp.
IPR018247. EF_Hand_1_Ca_BS.
IPR003961. Fibronectin_type3.
IPR013222. Glyco_hyd_98_carb-bd.
IPR001360. Glyco_hydro_1.
IPR013783. Ig-like_fold.
[Graphical view]

Gene3D

G3DSA:1.50.10.10. CelA/Cel48F_cat. 1 hit.
G3DSA:1.10.1330.10. Cellulos_enz_dockerin_1. 1 hit.
G3DSA:2.60.120.200. ConA_like_subgrp. 1 hit.
G3DSA:2.60.40.10. Ig-like_fold. 1 hit.

PANTHER

PTHR10353. Glyco_hydro_1. 1 hit.

Pfam

PF08305. NPCBM. 1 hit.
[Graphical view]

SMART

SM00060. FN3. 1 hit.
SM00776. NPCBM. 1 hit.
[Graphical view]

SUPFAM

SSF49899. ConA_like_lec_gl. 1 hit.
SSF49265. FN_III-like. 1 hit.
SSF48208. Glyco_trans_6hp. 1 hit.

PROSITE

PS00448. CLOS_CELLULOSOME_RPT. 1 hit.
PS00018. EF_HAND_1. 2 hits.
PS50853. FN3. 1 hit.
[Graphical view]

ProtoNet

Search...

Entry information

Entry name

Q0TP83_CLOP1

Accession

Primary (citable) accession number: Q0TP83

Entry history

Integrated into UniProtKB/TrEMBL:	September 5, 2006
Last sequence update:	September 5, 2006
Last modified:	December 14, 2011
This is version 45 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)