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Q0T803

- Q0T803_SHIF8

UniProt

Q0T803 - Q0T803_SHIF8

Protein
Submitted name:

Transcriptional regulator for nitrite reductase (Cytochrome c552)

Gene

dniR

Organism
Shigella flexneri serotype 5b (strain 8401)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 53 (01 Oct 2014)
      Sequence version 1 (05 Sep 2006)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. lytic transglycosylase activity Source: InterPro

    GO - Biological processi

    1. peptidoglycan metabolic process Source: InterPro

    Enzyme and pathway databases

    BioCyciSFLE373384:GHZM-194-MONOMER.

    Protein family/group databases

    CAZyiCBM50. Carbohydrate-Binding Module Family 50.
    GH23. Glycoside Hydrolase Family 23.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Transcriptional regulator for nitrite reductase (Cytochrome c552)Imported
    Gene namesi
    Name:dniRImported
    Ordered Locus Names:SFV_0195Imported
    OrganismiShigella flexneri serotype 5b (strain 8401)Imported
    Taxonomic identifieri373384 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeShigella
    ProteomesiUP000000659: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. membrane Source: InterPro

    Interactioni

    Protein-protein interaction databases

    STRINGi373384.SFV_0195.

    Structurei

    3D structure databases

    ProteinModelPortaliQ0T803.
    SMRiQ0T803. Positions 398-445.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG0741.
    HOGENOMiHOG000258639.
    KOiK08307.
    OMAiYNPAYNQ.
    OrthoDBiEOG6038ZC.

    Family and domain databases

    Gene3Di3.10.350.10. 2 hits.
    InterProiIPR018392. LysM_dom.
    IPR023346. Lysozyme-like_dom.
    IPR008258. TGlycosylase-like_SLT.
    IPR000189. Transglyc_AS.
    [Graphical view]
    PfamiPF01476. LysM. 2 hits.
    PF01464. SLT. 1 hit.
    [Graphical view]
    SMARTiSM00257. LysM. 2 hits.
    [Graphical view]
    SUPFAMiSSF53955. SSF53955. 1 hit.
    SSF54106. SSF54106. 2 hits.
    PROSITEiPS00922. TRANSGLYCOSYLASE. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q0T803-1 [UniParc]FASTAAdd to Basket

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    MKAKAILLAS VLLVGCQSTG NVQQHAQSLS AAGQGEAAKF TSQARWMDDG    50
    TSIAPDGDLW AFIGDELKMG IPENDRIREQ KQKYLRNKSY LHDVTLRAEP 100
    YMYWIAGQVK KRNMPMELVL LPIVESAFDP HATSGANAAG IWQIIPSTGR 150
    NYGLKQTRNY DARRDVVAST TAALNMMQRL NKMFDDDWLL TVAAYNSGEG 200
    RVMKAIKTNK ARGKSTDFWS LPLPQETKQY VPKMLALSDI LKNSKRYGVR 250
    LPTTDESRAL ARVHLSSPVE MAKVADMAGI SVSKLKTFNA GVKGSTLGAS 300
    GPQYVMVPKK HADQLRESLA SGEIAAVQST LVADNTPLNS RVYTVRSGDT 350
    LSSIASRLGV STKDLQQWNK LRGSKLKPGQ SLTIGAGSSA QRLANNSDSI 400
    TYRVRKGDSL SSIAKRHGVN IKDVMRWNSD TANLQPGDKL TLFVKNNNMP 450
    DS 452
    Length:452
    Mass (Da):49,476
    Last modified:September 5, 2006 - v1
    Checksum:i43CD5B416C59484A
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000266 Genomic DNA. Translation: ABF02473.1.
    RefSeqiYP_687778.1. NC_008258.1.

    Genome annotation databases

    EnsemblBacteriaiABF02473; ABF02473; SFV_0195.
    GeneIDi4208063.
    KEGGisfv:SFV_0195.
    PATRICi18723331. VBIShiFle33408_0216.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000266 Genomic DNA. Translation: ABF02473.1 .
    RefSeqi YP_687778.1. NC_008258.1.

    3D structure databases

    ProteinModelPortali Q0T803.
    SMRi Q0T803. Positions 398-445.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 373384.SFV_0195.

    Protein family/group databases

    CAZyi CBM50. Carbohydrate-Binding Module Family 50.
    GH23. Glycoside Hydrolase Family 23.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABF02473 ; ABF02473 ; SFV_0195 .
    GeneIDi 4208063.
    KEGGi sfv:SFV_0195.
    PATRICi 18723331. VBIShiFle33408_0216.

    Phylogenomic databases

    eggNOGi COG0741.
    HOGENOMi HOG000258639.
    KOi K08307.
    OMAi YNPAYNQ.
    OrthoDBi EOG6038ZC.

    Enzyme and pathway databases

    BioCyci SFLE373384:GHZM-194-MONOMER.

    Family and domain databases

    Gene3Di 3.10.350.10. 2 hits.
    InterProi IPR018392. LysM_dom.
    IPR023346. Lysozyme-like_dom.
    IPR008258. TGlycosylase-like_SLT.
    IPR000189. Transglyc_AS.
    [Graphical view ]
    Pfami PF01476. LysM. 2 hits.
    PF01464. SLT. 1 hit.
    [Graphical view ]
    SMARTi SM00257. LysM. 2 hits.
    [Graphical view ]
    SUPFAMi SSF53955. SSF53955. 1 hit.
    SSF54106. SSF54106. 2 hits.
    PROSITEi PS00922. TRANSGLYCOSYLASE. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of Shigella flexneri 5b and comparison with Shigella flexneri 2a."
      Nie H., Yang F., Zhang X., Yang J., Chen L., Wang J., Xiong Z., Peng J., Sun L., Dong J., Xue Y., Xu X., Chen S., Yao Z., Shen Y., Jin Q.
      BMC Genomics 7:173-173(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 8401Imported.

    Entry informationi

    Entry nameiQ0T803_SHIF8
    AccessioniPrimary (citable) accession number: Q0T803
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 5, 2006
    Last sequence update: September 5, 2006
    Last modified: October 1, 2014
    This is version 53 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3