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Q0T803 (Q0T803_SHIF8) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 50. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:dniR EMBL ABF02473.1
Ordered Locus Names:SFV_0195 EMBL ABF02473.1
OrganismShigella flexneri serotype 5b (strain 8401) [Complete proteome] [HAMAP] EMBL ABF02473.1
Taxonomic identifier373384 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeShigella

Protein attributes

Sequence length452 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Sequences

Sequence LengthMass (Da)Tools
Q0T803 [UniParc].

Last modified September 5, 2006. Version 1.
Checksum: 43CD5B416C59484A

FASTA45249,476
        10         20         30         40         50         60 
MKAKAILLAS VLLVGCQSTG NVQQHAQSLS AAGQGEAAKF TSQARWMDDG TSIAPDGDLW 

        70         80         90        100        110        120 
AFIGDELKMG IPENDRIREQ KQKYLRNKSY LHDVTLRAEP YMYWIAGQVK KRNMPMELVL 

       130        140        150        160        170        180 
LPIVESAFDP HATSGANAAG IWQIIPSTGR NYGLKQTRNY DARRDVVAST TAALNMMQRL 

       190        200        210        220        230        240 
NKMFDDDWLL TVAAYNSGEG RVMKAIKTNK ARGKSTDFWS LPLPQETKQY VPKMLALSDI 

       250        260        270        280        290        300 
LKNSKRYGVR LPTTDESRAL ARVHLSSPVE MAKVADMAGI SVSKLKTFNA GVKGSTLGAS 

       310        320        330        340        350        360 
GPQYVMVPKK HADQLRESLA SGEIAAVQST LVADNTPLNS RVYTVRSGDT LSSIASRLGV 

       370        380        390        400        410        420 
STKDLQQWNK LRGSKLKPGQ SLTIGAGSSA QRLANNSDSI TYRVRKGDSL SSIAKRHGVN 

       430        440        450 
IKDVMRWNSD TANLQPGDKL TLFVKNNNMP DS 

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References

[1]"Complete genome sequence of Shigella flexneri 5b and comparison with Shigella flexneri 2a."
Nie H., Yang F., Zhang X., Yang J., Chen L., Wang J., Xiong Z., Peng J., Sun L., Dong J., Xue Y., Xu X., Chen S., Yao Z., Shen Y., Jin Q.
BMC Genomics 7:173-173(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 8401 EMBL ABF02473.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000266 Genomic DNA. Translation: ABF02473.1.
RefSeqYP_687778.1. NC_008258.1.

3D structure databases

ProteinModelPortalQ0T803.
SMRQ0T803. Positions 398-445.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING373384.SFV_0195.

Protein family/group databases

CAZyCBM50. Carbohydrate-Binding Module Family 50.
GH23. Glycoside Hydrolase Family 23.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABF02473; ABF02473; SFV_0195.
GeneID4208063.
KEGGsfv:SFV_0195.
PATRIC18723331. VBIShiFle33408_0216.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0741.
HOGENOMHOG000258639.
KOK08307.
OMAAGLWQFV.
OrthoDBEOG6038ZC.
ProtClustDBPRK10783.

Enzyme and pathway databases

BioCycSFLE373384:GHZM-194-MONOMER.

Family and domain databases

Gene3D3.10.350.10. 2 hits.
InterProIPR018392. LysM_dom.
IPR023346. Lysozyme-like_dom.
IPR008258. TGlycosylase-like_SLT.
IPR000189. Transglyc_AS.
[Graphical view]
PfamPF01476. LysM. 2 hits.
PF01464. SLT. 1 hit.
[Graphical view]
SMARTSM00257. LysM. 2 hits.
[Graphical view]
SUPFAMSSF53955. SSF53955. 1 hit.
SSF54106. SSF54106. 2 hits.
PROSITEPS00922. TRANSGLYCOSYLASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ0T803_SHIF8
AccessionPrimary (citable) accession number: Q0T803
Entry history
Integrated into UniProtKB/TrEMBL: September 5, 2006
Last sequence update: September 5, 2006
Last modified: April 16, 2014
This is version 50 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)