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Q0T803

- Q0T803_SHIF8

UniProt

Q0T803 - Q0T803_SHIF8

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Protein
Submitted name: Transcriptional regulator for nitrite reductase (Cytochrome c552)
Gene
dniR, SFV_0195
Organism
Shigella flexneri serotype 5b (strain 8401)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. lytic transglycosylase activity Source: InterPro
Complete GO annotation...

GO - Biological processi

  1. peptidoglycan metabolic process Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciSFLE373384:GHZM-194-MONOMER.

Protein family/group databases

CAZyiCBM50. Carbohydrate-Binding Module Family 50.
GH23. Glycoside Hydrolase Family 23.

Names & Taxonomyi

Protein namesi
Submitted name:
Transcriptional regulator for nitrite reductase (Cytochrome c552)Imported
Gene namesi
Name:dniRImported
Ordered Locus Names:SFV_0195Imported
OrganismiShigella flexneri serotype 5b (strain 8401)Imported
Taxonomic identifieri373384 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeShigella
ProteomesiUP000000659: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. membrane Source: InterPro
Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi373384.SFV_0195.

Structurei

3D structure databases

ProteinModelPortaliQ0T803.
SMRiQ0T803. Positions 398-445.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG0741.
HOGENOMiHOG000258639.
KOiK08307.
OMAiYNPAYNQ.
OrthoDBiEOG6038ZC.

Family and domain databases

Gene3Di3.10.350.10. 2 hits.
InterProiIPR018392. LysM_dom.
IPR023346. Lysozyme-like_dom.
IPR008258. TGlycosylase-like_SLT.
IPR000189. Transglyc_AS.
[Graphical view]
PfamiPF01476. LysM. 2 hits.
PF01464. SLT. 1 hit.
[Graphical view]
SMARTiSM00257. LysM. 2 hits.
[Graphical view]
SUPFAMiSSF53955. SSF53955. 1 hit.
SSF54106. SSF54106. 2 hits.
PROSITEiPS00922. TRANSGLYCOSYLASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q0T803-1 [UniParc]FASTAAdd to Basket

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MKAKAILLAS VLLVGCQSTG NVQQHAQSLS AAGQGEAAKF TSQARWMDDG    50
TSIAPDGDLW AFIGDELKMG IPENDRIREQ KQKYLRNKSY LHDVTLRAEP 100
YMYWIAGQVK KRNMPMELVL LPIVESAFDP HATSGANAAG IWQIIPSTGR 150
NYGLKQTRNY DARRDVVAST TAALNMMQRL NKMFDDDWLL TVAAYNSGEG 200
RVMKAIKTNK ARGKSTDFWS LPLPQETKQY VPKMLALSDI LKNSKRYGVR 250
LPTTDESRAL ARVHLSSPVE MAKVADMAGI SVSKLKTFNA GVKGSTLGAS 300
GPQYVMVPKK HADQLRESLA SGEIAAVQST LVADNTPLNS RVYTVRSGDT 350
LSSIASRLGV STKDLQQWNK LRGSKLKPGQ SLTIGAGSSA QRLANNSDSI 400
TYRVRKGDSL SSIAKRHGVN IKDVMRWNSD TANLQPGDKL TLFVKNNNMP 450
DS 452
Length:452
Mass (Da):49,476
Last modified:September 5, 2006 - v1
Checksum:i43CD5B416C59484A
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000266 Genomic DNA. Translation: ABF02473.1.
RefSeqiYP_687778.1. NC_008258.1.

Genome annotation databases

EnsemblBacteriaiABF02473; ABF02473; SFV_0195.
GeneIDi4208063.
KEGGisfv:SFV_0195.
PATRICi18723331. VBIShiFle33408_0216.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000266 Genomic DNA. Translation: ABF02473.1 .
RefSeqi YP_687778.1. NC_008258.1.

3D structure databases

ProteinModelPortali Q0T803.
SMRi Q0T803. Positions 398-445.
ModBasei Search...

Protein-protein interaction databases

STRINGi 373384.SFV_0195.

Protein family/group databases

CAZyi CBM50. Carbohydrate-Binding Module Family 50.
GH23. Glycoside Hydrolase Family 23.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABF02473 ; ABF02473 ; SFV_0195 .
GeneIDi 4208063.
KEGGi sfv:SFV_0195.
PATRICi 18723331. VBIShiFle33408_0216.

Phylogenomic databases

eggNOGi COG0741.
HOGENOMi HOG000258639.
KOi K08307.
OMAi YNPAYNQ.
OrthoDBi EOG6038ZC.

Enzyme and pathway databases

BioCyci SFLE373384:GHZM-194-MONOMER.

Family and domain databases

Gene3Di 3.10.350.10. 2 hits.
InterProi IPR018392. LysM_dom.
IPR023346. Lysozyme-like_dom.
IPR008258. TGlycosylase-like_SLT.
IPR000189. Transglyc_AS.
[Graphical view ]
Pfami PF01476. LysM. 2 hits.
PF01464. SLT. 1 hit.
[Graphical view ]
SMARTi SM00257. LysM. 2 hits.
[Graphical view ]
SUPFAMi SSF53955. SSF53955. 1 hit.
SSF54106. SSF54106. 2 hits.
PROSITEi PS00922. TRANSGLYCOSYLASE. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of Shigella flexneri 5b and comparison with Shigella flexneri 2a."
    Nie H., Yang F., Zhang X., Yang J., Chen L., Wang J., Xiong Z., Peng J., Sun L., Dong J., Xue Y., Xu X., Chen S., Yao Z., Shen Y., Jin Q.
    BMC Genomics 7:173-173(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 8401Imported.

Entry informationi

Entry nameiQ0T803_SHIF8
AccessioniPrimary (citable) accession number: Q0T803
Entry historyi
Integrated into UniProtKB/TrEMBL: September 5, 2006
Last sequence update: September 5, 2006
Last modified: September 3, 2014
This is version 52 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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