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Protein
Submitted name:

Transcriptional regulator for nitrite reductase (Cytochrome c552)

Gene

dniR

Organism
Shigella flexneri serotype 5b (strain 8401)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciSFLE373384:GHZM-194-MONOMER.

Protein family/group databases

CAZyiCBM50. Carbohydrate-Binding Module Family 50.
GH23. Glycoside Hydrolase Family 23.

Names & Taxonomyi

Protein namesi
Submitted name:
Transcriptional regulator for nitrite reductase (Cytochrome c552)Imported
Gene namesi
Name:dniRImported
Ordered Locus Names:SFV_0195Imported
OrganismiShigella flexneri serotype 5b (strain 8401)Imported
Taxonomic identifieri373384 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeShigella
ProteomesiUP000000659 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Structurei

3D structure databases

ProteinModelPortaliQ0T803.
SMRiQ0T803. Positions 398-445.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG0741.
HOGENOMiHOG000258639.
KOiK08307.
OMAiYNPAYNQ.
OrthoDBiEOG6038ZC.

Family and domain databases

Gene3Di3.10.350.10. 2 hits.
InterProiIPR018392. LysM_dom.
IPR023346. Lysozyme-like_dom.
IPR008258. TGlycosylase-like_SLT.
IPR000189. Transglyc_AS.
[Graphical view]
PfamiPF01476. LysM. 2 hits.
PF01464. SLT. 1 hit.
[Graphical view]
SMARTiSM00257. LysM. 2 hits.
[Graphical view]
SUPFAMiSSF53955. SSF53955. 1 hit.
SSF54106. SSF54106. 2 hits.
PROSITEiPS00922. TRANSGLYCOSYLASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q0T803-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKAKAILLAS VLLVGCQSTG NVQQHAQSLS AAGQGEAAKF TSQARWMDDG
60 70 80 90 100
TSIAPDGDLW AFIGDELKMG IPENDRIREQ KQKYLRNKSY LHDVTLRAEP
110 120 130 140 150
YMYWIAGQVK KRNMPMELVL LPIVESAFDP HATSGANAAG IWQIIPSTGR
160 170 180 190 200
NYGLKQTRNY DARRDVVAST TAALNMMQRL NKMFDDDWLL TVAAYNSGEG
210 220 230 240 250
RVMKAIKTNK ARGKSTDFWS LPLPQETKQY VPKMLALSDI LKNSKRYGVR
260 270 280 290 300
LPTTDESRAL ARVHLSSPVE MAKVADMAGI SVSKLKTFNA GVKGSTLGAS
310 320 330 340 350
GPQYVMVPKK HADQLRESLA SGEIAAVQST LVADNTPLNS RVYTVRSGDT
360 370 380 390 400
LSSIASRLGV STKDLQQWNK LRGSKLKPGQ SLTIGAGSSA QRLANNSDSI
410 420 430 440 450
TYRVRKGDSL SSIAKRHGVN IKDVMRWNSD TANLQPGDKL TLFVKNNNMP

DS
Length:452
Mass (Da):49,476
Last modified:September 5, 2006 - v1
Checksum:i43CD5B416C59484A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000266 Genomic DNA. Translation: ABF02473.1.
RefSeqiWP_000644677.1. NC_008258.1.

Genome annotation databases

EnsemblBacteriaiABF02473; ABF02473; SFV_0195.
KEGGisfv:SFV_0195.
PATRICi18723331. VBIShiFle33408_0216.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000266 Genomic DNA. Translation: ABF02473.1.
RefSeqiWP_000644677.1. NC_008258.1.

3D structure databases

ProteinModelPortaliQ0T803.
SMRiQ0T803. Positions 398-445.
ModBaseiSearch...
MobiDBiSearch...

Protein family/group databases

CAZyiCBM50. Carbohydrate-Binding Module Family 50.
GH23. Glycoside Hydrolase Family 23.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABF02473; ABF02473; SFV_0195.
KEGGisfv:SFV_0195.
PATRICi18723331. VBIShiFle33408_0216.

Phylogenomic databases

eggNOGiCOG0741.
HOGENOMiHOG000258639.
KOiK08307.
OMAiYNPAYNQ.
OrthoDBiEOG6038ZC.

Enzyme and pathway databases

BioCyciSFLE373384:GHZM-194-MONOMER.

Family and domain databases

Gene3Di3.10.350.10. 2 hits.
InterProiIPR018392. LysM_dom.
IPR023346. Lysozyme-like_dom.
IPR008258. TGlycosylase-like_SLT.
IPR000189. Transglyc_AS.
[Graphical view]
PfamiPF01476. LysM. 2 hits.
PF01464. SLT. 1 hit.
[Graphical view]
SMARTiSM00257. LysM. 2 hits.
[Graphical view]
SUPFAMiSSF53955. SSF53955. 1 hit.
SSF54106. SSF54106. 2 hits.
PROSITEiPS00922. TRANSGLYCOSYLASE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of Shigella flexneri 5b and comparison with Shigella flexneri 2a."
    Nie H., Yang F., Zhang X., Yang J., Chen L., Wang J., Xiong Z., Peng J., Sun L., Dong J., Xue Y., Xu X., Chen S., Yao Z., Shen Y., Jin Q.
    BMC Genomics 7:173-173(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 8401Imported.

Entry informationi

Entry nameiQ0T803_SHIF8
AccessioniPrimary (citable) accession number: Q0T803
Entry historyi
Integrated into UniProtKB/TrEMBL: September 5, 2006
Last sequence update: September 5, 2006
Last modified: July 22, 2015
This is version 60 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.