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Q0SY16 (RL1_SHIF8) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 60. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
50S ribosomal protein L1
Gene names
Name:rplA
Ordered Locus Names:SFV_4056
OrganismShigella flexneri serotype 5b (strain 8401) [Complete proteome] [HAMAP]
Taxonomic identifier373384 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeShigella

Protein attributes

Sequence length234 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release By similarity. HAMAP-Rule MF_01318

Protein L1 is also a translational repressor protein, it controls the translation of the L11 operon by binding to its mRNA By similarity. HAMAP-Rule MF_01318

Subunit structure

Part of the 50S ribosomal subunit By similarity. HAMAP-Rule MF_01318

Sequence similarities

Belongs to the ribosomal protein L1P family.

Ontologies

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 23423450S ribosomal protein L1 HAMAP-Rule MF_01318
PRO_0000308106

Sequences

Sequence LengthMass (Da)Tools
Q0SY16 [UniParc].

Last modified September 5, 2006. Version 1.
Checksum: D751704B34748D53

FASTA23424,730
        10         20         30         40         50         60 
MAKLTKRMRV IREKVDATKQ YDINEAIALL KELATAKFVE SVDVAVNLGI DARKSDQNVR 

        70         80         90        100        110        120 
GATVLPHGTG RSVRVAVFTQ GANAEAAKAA GAELVGMEDL ADQIKKGEMN FDVVIASPDA 

       130        140        150        160        170        180 
MRVVGQLGQV LGPRGLMPNP KVGTVTPNVA EAVKNAKAGQ VRYRNDKNGI IHTTIGKVDF 

       190        200        210        220        230 
DADKLKENLE ALLVALKKAK PTQAKGVYIK KVSISTTMGA GVAVDQAGLS ASVN 

« Hide

References

[1]"Complete genome sequence of Shigella flexneri 5b and comparison with Shigella flexneri 2a."
Nie H., Yang F., Zhang X., Yang J., Chen L., Wang J., Xiong Z., Peng J., Sun L., Dong J., Xue Y., Xu X., Chen S., Yao Z., Shen Y., Jin Q.
BMC Genomics 7:173-173(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 8401.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000266 Genomic DNA. Translation: ABF06049.1.
RefSeqYP_691354.1. NC_008258.1.

3D structure databases

ProteinModelPortalQ0SY16.
SMRQ0SY16. Positions 1-234.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING373384.SFV_4056.

Proteomic databases

PRIDEQ0SY16.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABF06049; ABF06049; SFV_4056.
GeneID4206948.
KEGGsfv:SFV_4056.
PATRIC18732349. VBIShiFle33408_4604.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0081.
HOGENOMHOG000207015.
KOK02863.
OMAVDSTKQY.
OrthoDBEOG6FBX2G.

Enzyme and pathway databases

BioCycSFLE373384:GHZM-4052-MONOMER.

Family and domain databases

Gene3D3.30.190.20. 2 hits.
3.40.50.790. 1 hit.
HAMAPMF_01318_B. Ribosomal_L1_B.
InterProIPR005878. Ribosom_L1_bac-type.
IPR002143. Ribosomal_L1.
IPR023674. Ribosomal_L1-like.
IPR028364. Ribosomal_L1/biogenesis.
IPR016094. Ribosomal_L1_2-a/b-sand.
IPR016095. Ribosomal_L1_3-a/b-sand.
IPR023673. Ribosomal_L1_CS.
[Graphical view]
PfamPF00687. Ribosomal_L1. 1 hit.
[Graphical view]
PIRSFPIRSF002155. Ribosomal_L1. 1 hit.
SUPFAMSSF56808. SSF56808. 1 hit.
TIGRFAMsTIGR01169. rplA_bact. 1 hit.
PROSITEPS01199. RIBOSOMAL_L1. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRL1_SHIF8
AccessionPrimary (citable) accession number: Q0SY16
Entry history
Integrated into UniProtKB/Swiss-Prot: October 23, 2007
Last sequence update: September 5, 2006
Last modified: May 14, 2014
This is version 60 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Ribosomal proteins

Ribosomal proteins families and list of entries