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Protein

tRNA pseudouridine synthase B

Gene

truB

Organism
Clostridium perfringens (strain SM101 / Type A)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs.UniRule annotation

Catalytic activityi

tRNA uridine(55) = tRNA pseudouridine(55).UniRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Active sitei38NucleophileUniRule annotation1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionIsomerase
Biological processtRNA processing

Names & Taxonomyi

Protein namesi
Recommended name:
tRNA pseudouridine synthase BUniRule annotation (EC:5.4.99.25UniRule annotation)
Alternative name(s):
tRNA pseudouridine(55) synthaseUniRule annotation
Short name:
Psi55 synthaseUniRule annotation
tRNA pseudouridylate synthaseUniRule annotation
tRNA-uridine isomeraseUniRule annotation
Gene namesi
Name:truBUniRule annotation
Ordered Locus Names:CPR_1655
OrganismiClostridium perfringens (strain SM101 / Type A)
Taxonomic identifieri289380 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesClostridiaceaeClostridium
Proteomesi

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_10000845761 – 294tRNA pseudouridine synthase BAdd BLAST294

Structurei

3D structure databases

ProteinModelPortaliQ0SSD7
SMRiQ0SSD7
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000231225
KOiK03177
OMAiVDCSKGT

Family and domain databases

HAMAPiMF_01080 TruB_bact, 1 hit
InterProiView protein in InterPro
IPR020103 PsdUridine_synth_cat_dom_sf
IPR002501 PsdUridine_synth_N
IPR014780 tRNA_psdUridine_synth_TruB
IPR032819 TruB_C
PANTHERiPTHR13767 PTHR13767, 1 hit
PfamiView protein in Pfam
PF16198 TruB_C_2, 1 hit
PF01509 TruB_N, 1 hit
SUPFAMiSSF55120 SSF55120, 1 hit
TIGRFAMsiTIGR00431 TruB, 1 hit

Sequencei

Sequence statusi: Complete.

Q0SSD7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNGVINIYKN TGMTSFDVVA MVRRVAKMKK VGHTGTLDPE ASGVLPVCLG
60 70 80 90 100
KATKIIDYIM ENKKVYRVNL KLGMVTDTYD LEGEVLREED ASHITKDEIL
110 120 130 140 150
NCINSFVGTI DQVPPMYSAL KQNGVRLYEL ARQGIEVHRE ARKITIYSIE
160 170 180 190 200
NIKIESNDNI QMDVCCSKGT YIRSLCYDIG EKLNVGATMT ALERIQNGPF
210 220 230 240 250
IKEEAINIED LTEELLEKHI ISIEKALDSF EKITVNEKFG KLLRNGVKVF
260 270 280 290
DNRMYSEEVE FNKLYRVYED NGVFLGLGKR DEKGFKLEKL LIEE
Length:294
Mass (Da):33,452
Last modified:September 5, 2006 - v1
Checksum:iE893B78E385C79D1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000312 Genomic DNA Translation: ABG87727.1

Genome annotation databases

EnsemblBacteriaiABG87727; ABG87727; CPR_1655
KEGGicpr:CPR_1655

Similar proteinsi

Entry informationi

Entry nameiTRUB_CLOPS
AccessioniPrimary (citable) accession number: Q0SSD7
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 20, 2008
Last sequence update: September 5, 2006
Last modified: March 28, 2018
This is version 76 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

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