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Protein

30S ribosomal protein S20

Gene

rpsT

Organism
Clostridium perfringens (strain SM101 / Type A)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Binds directly to 16S ribosomal RNA.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciCPER289380:GI76-2025-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S20UniRule annotation
Gene namesi
Name:rpsTUniRule annotation
Ordered Locus Names:CPR_2014
OrganismiClostridium perfringens (strain SM101 / Type A)
Taxonomic identifieri289380 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesClostridiaceaeClostridium
Proteomesi
  • UP000001824 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002601131 – 8730S ribosomal protein S20Add BLAST87

Structurei

3D structure databases

ProteinModelPortaliQ0SRD4.
SMRiQ0SRD4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the bacterial ribosomal protein bS20 family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000097049.
KOiK02968.
OMAiANKKSAM.

Family and domain databases

Gene3Di1.20.58.110. 1 hit.
HAMAPiMF_00500. Ribosomal_S20. 1 hit.
InterProiView protein in InterPro
IPR002583. Ribosomal_S20.
PANTHERiPTHR33398. PTHR33398. 1 hit.
PfamiView protein in Pfam
PF01649. Ribosomal_S20p. 1 hit.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD004231. Ribosomal_S20. 1 hit.
SUPFAMiSSF46992. SSF46992. 1 hit.
TIGRFAMsiTIGR00029. S20. 1 hit.

Sequencei

Sequence statusi: Complete.

Q0SRD4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MANIKSAKKR IKVTEKKTLR NKMIKSALKT AIKKFEVAVE ANNKAEAATL
60 70 80
YVEAARALDM SASKGVVHKN MAARKKSRLA AKLNAMA
Length:87
Mass (Da):9,500
Last modified:September 5, 2006 - v1
Checksum:i0A3855A4F9257F8B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000312 Genomic DNA. Translation: ABG85915.1.

Genome annotation databases

EnsemblBacteriaiABG85915; ABG85915; CPR_2014.
KEGGicpr:CPR_2014.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiRS20_CLOPS
AccessioniPrimary (citable) accession number: Q0SRD4
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 28, 2006
Last sequence update: September 5, 2006
Last modified: June 7, 2017
This is version 59 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families