Q0SRB9 (Q0SRB9_CLOPS) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Glutamate decarboxylase EMBL ABG85385.1
EC=4.1.1.15 EMBL ABG85385.1

Gene names

Ordered Locus Names:

CPR_2029 EMBL ABG85385.1

Organism

Clostridium perfringens (strain SM101 / Type A) [Complete proteome] [HAMAP] EMBL ABG85385.1

Taxonomic identifier

289380 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Firmicutes › Clostridia › Clostridiales › Clostridiaceae › Clostridium › Clostridium perfringens

Protein attributes

Sequence length	466 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Cofactor	Pyridoxal phosphate By similarity. RuleBase RU000382
Sequence similarities	Belongs to the group II decarboxylase family. RuleBase RU000382

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU000382
Molecular function	Lyase RuleBase RU000382 EMBL ABG85385.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	glutamate metabolic process Inferred from electronic annotation. Source: InterPro
Molecular_function	glutamate decarboxylase activity Inferred from electronic annotation. Source: EC pyridoxal phosphate binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q0SRB9 [UniParc]. Last modified September 5, 2006. Version 1. Checksum: 141317A798F66613	FASTA	466	53,200
	10 20 30 40 50 60 MLFGKNELGS QFETPIFGTV ESNEPIPKYK LAKKSIAPQV AYRLIKDDLL DEGNARQNLA 70 80 90 100 110 120 TFCQTYMDDE AVKLMSETLE KNAIDKSEYP QTTDMENRCV NILADLWHAP KELNYMGTST 130 140 150 160 170 180 VGSSEACMLG GMAMKFRWRN RAKALGMDVT SKKPNLVISS GYQVCWEKFC VYWDIEMRLV 190 200 210 220 230 240 PMDEQHMSIN VDKVLDYVDD YTIGVVGILG ITYTGKYDDI KALDKKLEEY NKTAKITVPI 250 260 270 280 290 300 HVDGASGAMF APFIEPDLKW DFQLKNVVSI STSGHKYGLV YPGIGWVLWK DKEYLPQELV 310 320 330 340 350 360 FEVSYLGGKM PTMAINFSRS ASQILGQYYN FLRYGFEGYR QIHQRTKDVA MYLSSELEKT 370 380 390 400 410 420 GLFEIYNNGE NLPIVCYKLK DDVKVNWTLY DLADRLLMKG WQVPAYPLPE DLQNVIIQRF 430 440 450 460 VCRADLSRNL ADLLMRDLKA AIEDLNNARI LSKTQVDNKG VQGFTH

References

[1]

"Skewed genomic variability in strains of the toxigenic bacterial pathogen, Clostridium perfringens." Myers G.S., Rasko D.A., Cheung J.K., Ravel J., Seshadri R., Deboy R.T., Ren Q., Varga J., Awad M.M., Brinkac L.M., Daugherty S.C., Haft D.H., Dodson R.J., Madupu R., Nelson W.C., Rosovitz M.J., Sullivan S.A., Khouri H. , Dimitrov G.I., Watkins K.L., Mulligan S., Benton J., Radune D., Fisher D.J., Atkins H.S., Hiscox T., Jost B.H., Billington S.J., Songer J.G., McClane B.A., Titball R.W., Rood J.I., Melville S.B., Paulsen I.T. Genome Res. 16:1031-1040(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: SM101 / Type A.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000312 Genomic DNA. Translation: ABG85385.1.
RefSeq	YP_699338.1. NC_008262.1.
3D structure databases
ProteinModelPortal	Q0SRB9.
ModBase	Search...
Protein-protein interaction databases
STRING	289380.CPR_2029.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABG85385; ABG85385; CPR_2029.
GeneID	4204019.
KEGG	cpr:CPR_2029.
PATRIC	19492363. VBICloPer122123_2004.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0076.
HOGENOM	HOG000070228.
KO	K01580.
OMA	PMDKEHM.
ProtClustDB	CLSK876864.
Enzyme and pathway databases
BioCyc	CPER289380:GI76-2157-MONOMER.
Family and domain databases
Gene3D	3.40.640.10. 1 hit.
InterPro	IPR010107. Glutamate_decarboxylase. IPR002129. PyrdxlP-dep_de-COase. IPR015424. PyrdxlP-dep_Trfase. IPR015421. PyrdxlP-dep_Trfase_major_sub1. [Graphical view]
PANTHER	PTHR11999:SF1. PTHR11999:SF1. 1 hit.
Pfam	PF00282. Pyridoxal_deC. 1 hit. [Graphical view]
SUPFAM	SSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMs	TIGR01788. Glu-decarb-GAD. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q0SRB9_CLOPS

Accession

Primary (citable) accession number: Q0SRB9

Entry history

Integrated into UniProtKB/TrEMBL:	September 5, 2006
Last sequence update:	September 5, 2006
Last modified:	May 1, 2013
This is version 50 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)