Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

50S ribosomal protein L13

Gene

rplM

Organism
Borrelia afzelii (strain PKo)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L13
Gene namesi
Name:rplM
Ordered Locus Names:BAPKO_0348, BafPKo_0339
OrganismiBorrelia afzelii (strain PKo)
Taxonomic identifieri390236 [NCBI]
Taxonomic lineageiBacteriaSpirochaetesSpirochaetalesBorreliaceaeBorreliella
Proteomesi
  • UP000005216 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_10000553481 – 15250S ribosomal protein L13Add BLAST152

Proteomic databases

PRIDEiQ0SNH3.

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.

Protein-protein interaction databases

STRINGi390236.BAPKO_0348.

Structurei

3D structure databases

ProteinModelPortaliQ0SNH3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the universal ribosomal protein uL13 family.

Phylogenomic databases

eggNOGiENOG4108UM5. Bacteria.
COG0102. LUCA.
HOGENOMiHOG000225286.
KOiK02871.
OMAiVLMGKHK.
OrthoDBiPOG091H013T.

Family and domain databases

CDDicd00392. Ribosomal_L13. 1 hit.
Gene3Di3.90.1180.10. 1 hit.
HAMAPiMF_01366. Ribosomal_L13. 1 hit.
InterProiView protein in InterPro
IPR005822. Ribosomal_L13.
IPR005823. Ribosomal_L13_bac-type.
IPR023563. Ribosomal_L13_CS.
IPR036899. Ribosomal_L13_sf.
PANTHERiPTHR11545. PTHR11545. 1 hit.
PfamiView protein in Pfam
PF00572. Ribosomal_L13. 1 hit.
PIRSFiPIRSF002181. Ribosomal_L13. 1 hit.
SUPFAMiSSF52161. SSF52161. 1 hit.
TIGRFAMsiTIGR01066. rplM_bact. 1 hit.
PROSITEiView protein in PROSITE
PS00783. RIBOSOMAL_L13. 1 hit.

Sequencei

Sequence statusi: Complete.

Q0SNH3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNKITNNVTI WIKPKTVEKK WYVIDAADRV LGKVAVDVVR ILRGKHKAYY
60 70 80 90 100
TPHQDLGDNV IVINASKVRL TGKKYQQKLY YRHSRYPGGL YSDTFRTLSE
110 120 130 140 150
RKPCAPLEIA IKGMLPKGPL GRGLFRNLKV FSGSEHTLKA QNPVKLEANL

ER
Length:152
Mass (Da):17,347
Last modified:September 5, 2006 - v1
Checksum:iE794887603C07FDA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000395 Genomic DNA. Translation: ABH01605.1.
CP002933 Genomic DNA. Translation: AEL69565.1.
RefSeqiWP_004790698.1. NC_017238.1.

Genome annotation databases

EnsemblBacteriaiABH01605; ABH01605; BAPKO_0348.
AEL69565; AEL69565; BafPKo_0339.
KEGGibaf:BAPKO_0348.
bafz:BafPKo_0339.
PATRICifig|390236.22.peg.332.

Similar proteinsi

Entry informationi

Entry nameiRL13_BORAP
AccessioniPrimary (citable) accession number: Q0SNH3
Secondary accession number(s): G0IRQ5
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: September 5, 2006
Last modified: October 25, 2017
This is version 78 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families