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Protein
Submitted name:

Probable transcriptional regulator, TetR family protein

Gene

RHA1_ro05101

Organism
Rhodococcus jostii (strain RHA1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotationSAAS annotation

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotation

Enzyme and pathway databases

BioCyciRJOS101510:GJJ1-5098-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Probable transcriptional regulator, TetR family proteinImported
Gene namesi
Ordered Locus Names:RHA1_ro05101Imported
OrganismiRhodococcus jostii (strain RHA1)Imported
Taxonomic identifieri101510 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaCorynebacterialesNocardiaceaeRhodococcus
ProteomesiUP000008710 Componenti: Chromosome

PTM / Processingi

Proteomic databases

PRIDEiQ0S6F4.

Interactioni

Protein-protein interaction databases

STRINGi101510.RHA1_ro05101.

Structurei

3D structure databases

ProteinModelPortaliQ0S6F4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains 1 HTH tetR-type DNA-binding domain.UniRule annotation
Contains HTH tetR-type DNA-binding domain.SAAS annotation

Phylogenomic databases

eggNOGiNOG116599.
HOGENOMiHOG000253516.
OMAiRGIKEVM.
OrthoDBiEOG6HB9PG.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
1.10.357.10. 1 hit.
InterProiIPR009057. Homeodomain-like.
IPR001647. HTH_TetR.
IPR015893. Tet_transcr_reg_TetR-like_C.
[Graphical view]
PfamiPF00440. TetR_N. 1 hit.
[Graphical view]
PRINTSiPR00455. HTHTETR.
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiPS50977. HTH_TETR_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q0S6F4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTERVDTPGI DPADFRVHVV AQAIRLFSEN GYEATTVEQI ASAAGVSRRT
60 70 80 90 100
FFRQFRSKED VIFADHESLL QQAGDYLSTD SDDPWAAVCR TAGLVFDRFR
110 120 130 140 150
ENRELSARRY QVVQRVPALR DREIVTGFRY ERLFVDYLRG VVPTEPVLKV
160 170 180 190 200
IGFAAAVTAC HNFLLRNMIK GDPDATAEEL ERALLDVRRT FGVAPGASTQ
210 220 230
EQDAVLVVSY PPGTPVDEIT GRIQAQLSRR RD
Length:232
Mass (Da):26,063
Last modified:September 5, 2006 - v1
Checksum:i96E6A0625A5A39CF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000431 Genomic DNA. Translation: ABG96882.1.
RefSeqiWP_011597337.1. NC_008268.1.
YP_705040.1. NC_008268.1.

Genome annotation databases

EnsemblBacteriaiABG96882; ABG96882; RHA1_ro05101.
GeneIDi4222652.
KEGGirha:RHA1_ro05101.
PATRICi23209147. VBIRhoJos26306_5153.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000431 Genomic DNA. Translation: ABG96882.1.
RefSeqiWP_011597337.1. NC_008268.1.
YP_705040.1. NC_008268.1.

3D structure databases

ProteinModelPortaliQ0S6F4.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi101510.RHA1_ro05101.

Proteomic databases

PRIDEiQ0S6F4.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABG96882; ABG96882; RHA1_ro05101.
GeneIDi4222652.
KEGGirha:RHA1_ro05101.
PATRICi23209147. VBIRhoJos26306_5153.

Phylogenomic databases

eggNOGiNOG116599.
HOGENOMiHOG000253516.
OMAiRGIKEVM.
OrthoDBiEOG6HB9PG.

Enzyme and pathway databases

BioCyciRJOS101510:GJJ1-5098-MONOMER.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
1.10.357.10. 1 hit.
InterProiIPR009057. Homeodomain-like.
IPR001647. HTH_TetR.
IPR015893. Tet_transcr_reg_TetR-like_C.
[Graphical view]
PfamiPF00440. TetR_N. 1 hit.
[Graphical view]
PRINTSiPR00455. HTHTETR.
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiPS50977. HTH_TETR_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: RHA1Imported.

Entry informationi

Entry nameiQ0S6F4_RHOJR
AccessioniPrimary (citable) accession number: Q0S6F4
Entry historyi
Integrated into UniProtKB/TrEMBL: September 5, 2006
Last sequence update: September 5, 2006
Last modified: June 24, 2015
This is version 60 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.