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Protein
Submitted name:

Transcriptional regulator

Gene

RHA1_ro05125

Organism
Rhodococcus jostii (strain RHA1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingSAAS annotation
Biological processTranscription, Transcription regulationSAAS annotation

Enzyme and pathway databases

BioCyciRJOS101510:GJJ1-5119-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Transcriptional regulatorImported
Gene namesi
Ordered Locus Names:RHA1_ro05125Imported
OrganismiRhodococcus jostii (strain RHA1)Imported
Taxonomic identifieri101510 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaCorynebacterialesNocardiaceaeRhodococcus
Proteomesi
  • UP000008710 Componenti: Chromosome

PTM / Processingi

Proteomic databases

PRIDEiQ0S6D0.

Interactioni

Protein-protein interaction databases

STRINGi101510.RHA1_ro05125.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3FM5X-ray2.00A/B/C/D1-146[»]
5CYVX-ray1.52A/B1-146[»]
ProteinModelPortaliQ0S6D0.
SMRiQ0S6D0.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ0S6D0.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini8 – 141HTH marR-type DNA-bindingInterPro annotationAdd BLAST134

Phylogenomic databases

eggNOGiENOG41061AN. Bacteria.
COG1846. LUCA.
HOGENOMiHOG000221454.
OMAiAAVCDEP.
OrthoDBiPOG091H06HC.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiView protein in InterPro
IPR000835. HTH_MarR-typ.
IPR023187. Tscrpt_reg_MarR-type_CS.
IPR011991. WHTH_DNA-bd_dom.
PfamiView protein in Pfam
PF01047. MarR. 1 hit.
PRINTSiPR00598. HTHMARR.
SMARTiView protein in SMART
SM00347. HTH_MARR. 1 hit.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiView protein in PROSITE
PS01117. HTH_MARR_1. 1 hit.
PS50995. HTH_MARR_2. 1 hit.

Sequencei

Sequence statusi: Complete.

Q0S6D0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAESQALSDD IGFLLSRVGG MVLGAVNKAL VPTGLRVRSY SVLVLACEQA
60 70 80 90 100
EGVNQRGVAA TMGLDPSQIV GLVDELEERG LVVRTLDPSD RRNKLIAATE
110 120 130 140
EGRRLRDDAK ARVDAAHGRY FEGIPDTVVN QMRDTLQSIA FPTFVE
Length:146
Mass (Da):15,811
Last modified:September 5, 2006 - v1
Checksum:i7B0280324669EF20
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000431 Genomic DNA. Translation: ABG96906.1.
RefSeqiWP_009478157.1. NC_008268.1.

Genome annotation databases

EnsemblBacteriaiABG96906; ABG96906; RHA1_ro05125.
GeneIDi4222676.
KEGGirha:RHA1_ro05125.
PATRICi23209195. VBIRhoJos26306_5177.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000431 Genomic DNA. Translation: ABG96906.1.
RefSeqiWP_009478157.1. NC_008268.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3FM5X-ray2.00A/B/C/D1-146[»]
5CYVX-ray1.52A/B1-146[»]
ProteinModelPortaliQ0S6D0.
SMRiQ0S6D0.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi101510.RHA1_ro05125.

Proteomic databases

PRIDEiQ0S6D0.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABG96906; ABG96906; RHA1_ro05125.
GeneIDi4222676.
KEGGirha:RHA1_ro05125.
PATRICi23209195. VBIRhoJos26306_5177.

Phylogenomic databases

eggNOGiENOG41061AN. Bacteria.
COG1846. LUCA.
HOGENOMiHOG000221454.
OMAiAAVCDEP.
OrthoDBiPOG091H06HC.

Enzyme and pathway databases

BioCyciRJOS101510:GJJ1-5119-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ0S6D0.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiView protein in InterPro
IPR000835. HTH_MarR-typ.
IPR023187. Tscrpt_reg_MarR-type_CS.
IPR011991. WHTH_DNA-bd_dom.
PfamiView protein in Pfam
PF01047. MarR. 1 hit.
PRINTSiPR00598. HTHMARR.
SMARTiView protein in SMART
SM00347. HTH_MARR. 1 hit.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiView protein in PROSITE
PS01117. HTH_MARR_1. 1 hit.
PS50995. HTH_MARR_2. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ0S6D0_RHOJR
AccessioniPrimary (citable) accession number: Q0S6D0
Entry historyiIntegrated into UniProtKB/TrEMBL: September 5, 2006
Last sequence update: September 5, 2006
Last modified: May 10, 2017
This is version 81 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.