Putative uncharacterized protein - Rhodococcus sp. (strain RHA1)

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Unreviewed, UniProtKB/TrEMBL Q0S193 (Q0S193_RHOSR)

Last modified June 16, 2009. Version 19. History...

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Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequences · References · Cross-references · Entry information

Names and origin

Protein names

Submitted name:
Putative uncharacterized protein EMBL ABG98693.1

Gene names

Ordered Locus Names:

RHA1_ro06927

Organism

Rhodococcus sp. (strain RHA1) [Complete proteome] [HAMAP]

Taxonomic identifier

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Nocardiaceae › Rhodococcus

Protein attributes

Sequence length	530 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Predicted.

General annotation (Comments)

Sequence similarities

Contains 1 HTH luxR-type DNA-binding domain. RuleBase RU000707V5

Ontologies

Keywords
Biological process	Transcription Transcription regulation RuleBase RU000707V5
Ligand	DNA-binding RuleBase RU000707V5
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: InterPro two-component signal transduction system (phosphorelay) Inferred from electronic annotation. Source: InterPro
Cellular component	intracellular Inferred from electronic annotation. Source: InterPro
Molecular function	catalytic activity Inferred from electronic annotation. Source: InterPro sequence-specific DNA binding Inferred from electronic annotation. Source: InterPro transcription factor activity Inferred from electronic annotation. Source: InterPro two-component response regulator activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

Sequence

Length

Mass (Da)

Tools

Q0S193-1 [UniParc].

Last modified September 5, 2006. Version 1.
Checksum: 79AE8149572E4FEB
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530

57,213

        10         20         30         40         50         60 
MHPHGTLPGS GKGLSRAELL AAVSLAIDLG LGQPMEHMLR SSLIATRIAE RMGLDPEQQA 

        70         80         90        100        110        120 
TVYYANLVGW IGCHADSHEL SALFGDDIAF RADTYAVDMT GLPFLRLMTS HVGRGLPGWE 

       130        140        150        160        170        180 
RGIRAAVFLV AARGRVATLI HSHCSSAGVL SDRMGLDGQV GKALAYVFER WDGRGLPNGC 

       190        200        210        220        230        240 
RGEGIPIEIH ISHVADVVEV HLRTGGLGHA KEVLRSRRGS QFSPAVVEVF ERDAAAIVDG 

       250        260        270        280        290        300 
LLEMDVWVAA LARAPDRDRT LTAEESDELL GAMADFVDLK SPFTLGHSRG VANLVAGAAR 

       310        320        330        340        350        360 
HLGMSPSDIT HLYRAGLVHS LGKMGVSNQI WEKKGPLTTT EWERVRMYPD LTGRILSRVN 

       370        380        390        400        410        420 
GLESVVSVAM KHRERIDGSG FPRGIAGAEL TAKDRLLAAA DAYQRLLEPR PHRLALDPRG 

       430        440        450        460        470        480 
AADRLKEEAR TGRLDAESVA AVLAAAGQRV SRRTPWPAGL TDREVEILRL VAQGRSNREI 

       490        500        510        520        530 
AADLFIAEKT ARNHVERVYA KLGVNNRTQA SLAAIDRGLV GFPVNAVVGK

References

[1]

"The complete genome of Rhodococcus sp. RHA1 provides insights into a catabolic powerhouse."
McLeod M.P., Warren R.L., Hsiao W.W.L., Araki N., Myhre M., Fernandes C., Miyazawa D., Wong W., Lillquist A.L., Wang D., Dosanjh M., Hara H., Petrescu A., Morin R.D., Yang G., Stott J.M., Schein J.E., Shin H.

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Eltis L.D.
Proc. Natl. Acad. Sci. U.S.A. 103:15582-15587(2006) [PubMed: 17030794] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
	CP000431 Genomic DNA. Translation: ABG98693.1.
RefSeq	YP_706851.1.
3D structure databases
ModBase	Search...
Genome annotation databases
GeneID	4224478.
GenomeReviews	Gene locus RHA1_ro06927 in contig CP000431_GR.
KEGG	rha:RHA1_ro06927.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	Q0S193.
OMA	Q0S193. CSSNAAR.
Enzyme and pathway databases
BioCyc	RSP101510:RHA1_RO06927-MON.
Family and domain databases
InterPro	IPR003607. Met-dep_phosphohydro_HD. IPR006674. Met-dep_phosphohydro_HD_sub. IPR000792. Tscrpt_reg_LuxR_C. IPR011991. Wing_hlx_DNA_bd. [Graphical view]
Gene3D	G3DSA:1.10.10.10. Wing_hlx_DNA_bd. 1 hit.
Pfam	PF00196. GerE. 1 hit. PF01966. HD. 1 hit. [Graphical view]
PRINTS	PR00038. HTHLUXR.
ProDom	PD000307. HTH_LuxR. 1 hit. [Graphical view] [Entries sharing at least one domain]
SMART	SM00471. HDc. 1 hit. SM00421. HTH_LUXR. 1 hit. [Graphical view]
PROSITE	PS50043. HTH_LUXR_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q0S193_RHOSR

Accession

Primary (citable) accession number: Q0S193

Entry history

Integrated into UniProtKB/TrEMBL:	September 5, 2006
Last sequence update:	September 5, 2006
Last modified:	June 16, 2009
This is version 19 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequences · References · Cross-references · Entry information