Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Frankia alni str. ACN14A chromosome, complete sequence

Gene

FRAAL0625

Organism
Frankia alni (strain ACN14a)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

IsomeraseImported

Enzyme and pathway databases

BioCyciFALN326424:GJ82-617-MONOMER.

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Submitted name:
Frankia alni str. ACN14A chromosome, complete sequenceImported (EC:5.4.99.16Imported)
Gene namesi
Ordered Locus Names:FRAAL0625Imported
OrganismiFrankia alni (strain ACN14a)Imported
Taxonomic identifieri326424 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaFrankialesFrankiaceaeFrankia
ProteomesiUP000000657 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi326424.FRAAL0625.

Structurei

3D structure databases

ProteinModelPortaliQ0RT04.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000220639.
KOiK05343.
OMAiPDRDDGY.
OrthoDBiEOG6RVFV2.

Family and domain databases

Gene3Di3.20.20.80. 3 hits.
InterProiIPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 2 hits.

Sequencei

Sequence statusi: Complete.

Q0RT04-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRLSRTADLW WKNAVIYCLD VETFADGNGD GCGDFRGLTQ RVDYLHELGV
60 70 80 90 100
TCIWLMPFYP TPDRDDGYDI TDFYGVDPRL GTHGDLVEFL LVARDRGIRV
110 120 130 140 150
IADLVVNHTS DQHPWFVSAR SSRDSPYRGY YVWRDEPPAD GPSDVVFPDQ
160 170 180 190 200
EDSVWQYDDA AGQYYLHRFY KHQPDLDVAN PAVRDEIARI MGFWIALGLS
210 220 230 240 250
GFRVDAVPFL LETDGAADAA DLPDPHEYLR DLRAFVSRRD GEVVLLGEVN
260 270 280 290 300
LPYDDTRRFF GDEDGDELTM CFDFPGMQRL YLALARRDAT PLLEALRDRP
310 320 330 340 350
AAPKDCHWAT FVRNHDELTL DKLDDGERQE VFAAFGPREE MQLYGRGLRR
360 370 380 390 400
RLPPMLDGDP ARIRMVYSLL FALPGTPTLF YGEEIGMGEN LDIPGREAVR
410 420 430 440 450
VPMQWSDGPN GGFSTVDPDA EADRLPAPVV QGEYGPAKVN VAAQRHDPTS
460 470 480 490 500
LFSWVAALVR RYRQCPELAW GAGVTVDHDT ASVLAHWTEH DGRAVLTLHN
510 520 530 540 550
FAAASASVTL RLPEVGAGAR FVELLGEQAG AVRTVDEDGS LRLDVDAYAA

HWLRTES
Length:557
Mass (Da):62,511
Last modified:September 5, 2006 - v1
Checksum:iA010F1C7685441CE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CT573213 Genomic DNA. Translation: CAJ59299.1.
RefSeqiWP_011601874.1. NC_008278.1.
YP_710906.1. NC_008278.1.

Genome annotation databases

KEGGifal:FRAAL0625.
PATRICi21911193. VBIFraAln347_0568.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CT573213 Genomic DNA. Translation: CAJ59299.1.
RefSeqiWP_011601874.1. NC_008278.1.
YP_710906.1. NC_008278.1.

3D structure databases

ProteinModelPortaliQ0RT04.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi326424.FRAAL0625.

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

KEGGifal:FRAAL0625.
PATRICi21911193. VBIFraAln347_0568.

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000220639.
KOiK05343.
OMAiPDRDDGY.
OrthoDBiEOG6RVFV2.

Enzyme and pathway databases

BioCyciFALN326424:GJ82-617-MONOMER.

Family and domain databases

Gene3Di3.20.20.80. 3 hits.
InterProiIPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 2 hits.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ACN14aImported.

Entry informationi

Entry nameiQ0RT04_FRAAA
AccessioniPrimary (citable) accession number: Q0RT04
Entry historyi
Integrated into UniProtKB/TrEMBL: September 5, 2006
Last sequence update: September 5, 2006
Last modified: June 24, 2015
This is version 57 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.