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Q0RRS9

- RPOC_FRAAA

UniProt

Q0RRS9 - RPOC_FRAAA

Protein

DNA-directed RNA polymerase subunit beta'

Gene

rpoC

Organism
Frankia alni (strain ACN14a)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 55 (01 Oct 2014)
      Sequence version 1 (05 Sep 2006)
      Previous versions | rss
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    Functioni

    DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.UniRule annotation

    Catalytic activityi

    Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).UniRule annotation

    GO - Molecular functioni

    1. DNA binding Source: UniProtKB-HAMAP
    2. DNA-directed RNA polymerase activity Source: UniProtKB-HAMAP

    GO - Biological processi

    1. transcription, DNA-templated Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Nucleotidyltransferase, Transferase

    Keywords - Biological processi

    Transcription

    Enzyme and pathway databases

    BioCyciFALN326424:GJ82-1057-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DNA-directed RNA polymerase subunit beta'UniRule annotation (EC:2.7.7.6UniRule annotation)
    Short name:
    RNAP subunit beta'UniRule annotation
    Alternative name(s):
    RNA polymerase subunit beta'UniRule annotation
    Transcriptase subunit beta'UniRule annotation
    Gene namesi
    Name:rpoCUniRule annotation
    Ordered Locus Names:FRAAL1073
    OrganismiFrankia alni (strain ACN14a)
    Taxonomic identifieri326424 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesFrankineaeFrankiaceaeFrankia
    ProteomesiUP000000657: Chromosome

    Subcellular locationi

    Keywords - Cellular componenti

    DNA-directed RNA polymerase

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 12961296DNA-directed RNA polymerase subunit beta'PRO_0000308835Add
    BLAST

    Proteomic databases

    PRIDEiQ0RRS9.

    Interactioni

    Subunit structurei

    The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription.UniRule annotation

    Protein-protein interaction databases

    STRINGi326424.FRAAL1073.

    Structurei

    3D structure databases

    ProteinModelPortaliQ0RRS9.
    SMRiQ0RRS9. Positions 9-136.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the RNA polymerase beta' chain family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0086.
    HOGENOMiHOG000218387.
    KOiK03046.
    OMAiGWEPGQT.
    OrthoDBiEOG6M9DS6.

    Family and domain databases

    HAMAPiMF_01322. RNApol_bact_RpoC.
    InterProiIPR012754. DNA-dir_RpoC_beta_prime.
    IPR000722. RNA_pol_asu.
    IPR006592. RNA_pol_N.
    IPR007080. RNA_pol_Rpb1_1.
    IPR007066. RNA_pol_Rpb1_3.
    IPR007083. RNA_pol_Rpb1_4.
    IPR007081. RNA_pol_Rpb1_5.
    [Graphical view]
    PfamiPF04997. RNA_pol_Rpb1_1. 1 hit.
    PF00623. RNA_pol_Rpb1_2. 1 hit.
    PF04983. RNA_pol_Rpb1_3. 1 hit.
    PF05000. RNA_pol_Rpb1_4. 1 hit.
    PF04998. RNA_pol_Rpb1_5. 1 hit.
    [Graphical view]
    SMARTiSM00663. RPOLA_N. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR02386. rpoC_TIGR. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q0RRS9-1 [UniParc]FASTAAdd to Basket

    « Hide

    MLDVNFFDEL RIGLATADDI RQWSHGEVKK PETINYRTLK PEKDGLFCEK     50
    IFGPTRDWEC YCGKYKRVRF KGIICERCGV EVTRAKVRRE RMGHIELAAP 100
    VTHIWYFKGV PSRLGYLLDL APKDLEKVIY FAAYMITKVD AEARHRDLPT 150
    LEARMGVEKQ QLEDKKNADV ETRQKRLETD LAQLEAEGAK GDARRKVRES 200
    AEREMRQIRD RAQRKIDDLD RVFDRFKNMK VQDLEPDELL YRELRDRFGQ 250
    YFDGGMGAEA LQRRLADFDL AAEAESLRET IRSGKGQKKA RALKRLKVVS 300
    AFLNTRNSPM GMVLDCVPVI PPDLRPMVQL DGGRFATSDL NDLYRRVINR 350
    NNRLKRLLDL GAPEIIVNNE KRMLQEAVDA LFDNGRRGRP VTGPGNRPLK 400
    SLSDMLKGKQ GRFRQNLLGK RVDYSGRSVI VVGPQLKLHQ CGLPKQMALE 450
    LFKPFVMKRL VDLNHAQNIK SAKRMVERAR PVVWDVLEEV ITEHPVLLNR 500
    APTLHRLGIQ AFEPQLVEGK AIQIHPLVCT AFNADFDGDQ MAVHLPLSAE 550
    AQAEARILML SSNNILSPAS GRPLAMPSLD MVTGVFHLST LAEGAVGEGR 600
    AFSSVAEAQM AFDAREIALQ ARISVRLRDT TPPSDWVPPA DWVTGDVFTL 650
    ETTFGRCLLN EALPEGYPFI NAQLNKKAQA AIVNDLAERY PKIQVAATLD 700
    ALKSAGFYWA TRSGVTVAIE DVVAPPNKAE ILDDYEQRAD RVQKQFDRGF 750
    LSDEERRSEL VQIWTEATNK IAEAMEKNFP QTNPVYVLVN SGAAGNMMQI 800
    RQLAGMRGLV SNPKGEIIPR PIKANFREGL TVLEYFISTH GARKGLADTA 850
    LRTADSGYLT RRLVDVSQDV IVREEDCGTE RGILTRIARR GADGVLVRDR 900
    YAETSAYART LASDAVDEHG EIIVPAGTDA GDVAIGQIIE AGIESVRVRS 950
    ALTCESRMGV CAQCYGRSLA TGKLVDVGEA VGIVAAQSIG EPGTQLTMRT 1000
    FHSGGVAGDD ITQGLPRVVE LFEARSPKGK APITEVSGRV KIEETEKTFK 1050
    VVVVPDDGSE EIAYPVSRRS RLRVREGDRI EVGNQIVDGA VDPHEVLRIL 1100
    GPRQVQLHLV DQVQEVYRSQ GVSIHDKHIE IIIRQMLKRV NVLESGETNL 1150
    LPGELCERAR FESENRRVVE SGGQPASARP VLMGITKASL ATESWLSAAS 1200
    FQETTRVLTD AAINARSDSL VGLKENVIIG KLIPAGTGIS RYRNIRVEPT 1250
    EEARAAMYSV GAYEDGGSVE YGAFGTGSGQ AVPLDEFDYR SSGDFR 1296
    Length:1,296
    Mass (Da):144,064
    Last modified:September 5, 2006 - v1
    Checksum:i05031E4EEEB0CD08
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CT573213 Genomic DNA. Translation: CAJ59738.1.
    RefSeqiWP_011602295.1. NC_008278.1.
    YP_711332.1. NC_008278.1.

    Genome annotation databases

    GeneIDi4232670.
    KEGGifal:FRAAL1073.
    PATRICi21912001. VBIFraAln347_0964.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CT573213 Genomic DNA. Translation: CAJ59738.1 .
    RefSeqi WP_011602295.1. NC_008278.1.
    YP_711332.1. NC_008278.1.

    3D structure databases

    ProteinModelPortali Q0RRS9.
    SMRi Q0RRS9. Positions 9-136.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 326424.FRAAL1073.

    Proteomic databases

    PRIDEi Q0RRS9.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 4232670.
    KEGGi fal:FRAAL1073.
    PATRICi 21912001. VBIFraAln347_0964.

    Phylogenomic databases

    eggNOGi COG0086.
    HOGENOMi HOG000218387.
    KOi K03046.
    OMAi GWEPGQT.
    OrthoDBi EOG6M9DS6.

    Enzyme and pathway databases

    BioCyci FALN326424:GJ82-1057-MONOMER.

    Family and domain databases

    HAMAPi MF_01322. RNApol_bact_RpoC.
    InterProi IPR012754. DNA-dir_RpoC_beta_prime.
    IPR000722. RNA_pol_asu.
    IPR006592. RNA_pol_N.
    IPR007080. RNA_pol_Rpb1_1.
    IPR007066. RNA_pol_Rpb1_3.
    IPR007083. RNA_pol_Rpb1_4.
    IPR007081. RNA_pol_Rpb1_5.
    [Graphical view ]
    Pfami PF04997. RNA_pol_Rpb1_1. 1 hit.
    PF00623. RNA_pol_Rpb1_2. 1 hit.
    PF04983. RNA_pol_Rpb1_3. 1 hit.
    PF05000. RNA_pol_Rpb1_4. 1 hit.
    PF04998. RNA_pol_Rpb1_5. 1 hit.
    [Graphical view ]
    SMARTi SM00663. RPOLA_N. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR02386. rpoC_TIGR. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ACN14a.

    Entry informationi

    Entry nameiRPOC_FRAAA
    AccessioniPrimary (citable) accession number: Q0RRS9
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: October 23, 2007
    Last sequence update: September 5, 2006
    Last modified: October 1, 2014
    This is version 55 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3