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Protein
Submitted name:

ATP-dependent DNA ligase (LigC)

Gene

lig

Organism
Frankia alni (strain ACN14a)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciFALN326424:GJ82-2073-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase (LigC)Imported (EC:6.5.1.1Imported)
Gene namesi
Name:ligImported
Ordered Locus Names:FRAAL2110Imported
OrganismiFrankia alni (strain ACN14a)Imported
Taxonomic identifieri326424 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaFrankialesFrankiaceaeFrankia
ProteomesiUP000000657 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi326424.FRAAL2110.

Structurei

3D structure databases

ProteinModelPortaliQ0RNX7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000222508.
OMAiHERTADC.
OrthoDBiEOG63NMFT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 2 hits.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q0RNX7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGQYRAVDLP VVPPVKPMLA RAVAEIPPGL VYEPKWDGFR ALVFRDGDAV
60 70 80 90 100
EITSRTTKSM TRYFPELVAA LRAVLPARCV LDGEIVVAGE HGLDFEALQQ
110 120 130 140 150
RVHPAASRVA RLAAETQVSF VAFDLLAVGD RALLDEPFAR RRAELAELLR
160 170 180 190 200
PGDAAGVRVH VTPATDDLDL ARRWFDQFEG AGLDGIIAKP PTGGYEPDRR
210 220 230 240 250
TMFKIKHERT ADCVVAGYRP HKSGAGAVGS LLLGLYPDPD PDGTGTTADA
260 270 280 290 300
DAGPGAGDPA GGSALAGAGL AAVGVTSAFA MARRRELVSE LAPLVIPIDE
310 320 330 340 350
HPWAPAGSGG TRTPWDAGES RWAAGRDLSF VPLRPVLVAE VRYDHMEGPR
360 370 380
FRHTTQFVRF RPDRDPHSCT FAQLERPVRV DLADVLR
Length:387
Mass (Da):41,710
Last modified:September 5, 2006 - v1
Checksum:iFD94C6EBDFC8BE66
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CT573213 Genomic DNA. Translation: CAJ60759.1.

Genome annotation databases

KEGGifal:FRAAL2110.
PATRICi21913928. VBIFraAln347_1925.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CT573213 Genomic DNA. Translation: CAJ60759.1.

3D structure databases

ProteinModelPortaliQ0RNX7.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi326424.FRAAL2110.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

KEGGifal:FRAAL2110.
PATRICi21913928. VBIFraAln347_1925.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000222508.
OMAiHERTADC.
OrthoDBiEOG63NMFT.

Enzyme and pathway databases

BioCyciFALN326424:GJ82-2073-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 2 hits.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ACN14aImported.

Entry informationi

Entry nameiQ0RNX7_FRAAA
AccessioniPrimary (citable) accession number: Q0RNX7
Entry historyi
Integrated into UniProtKB/TrEMBL: September 5, 2006
Last sequence update: September 5, 2006
Last modified: July 22, 2015
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.