Q0RJC4 (Q0RJC4_FRAAA) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative transcriptional regulator (GntR-family) EMBL CAJ62388.1

Gene names

Ordered Locus Names:

FRAAL3745

Organism

Frankia alni (strain ACN14a) [Complete proteome] [HAMAP] EMBL CAJ62388.1

Taxonomic identifier

326424 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Frankineae › Frankiaceae › Frankia › Frankia alni

Protein attributes

Sequence length	125 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Sequence similarities

Contains 1 HTH gntR-type DNA-binding domain. SAAS SAAS000524 RuleBase RU000706

Ontologies

Keywords
Biological process	Transcription Transcription regulation SAAS SAAS000524 RuleBase RU000706
Ligand	DNA-binding SAAS SAAS000524 RuleBase RU000706
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Cellular_component	intracellular Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q0RJC4 [UniParc]. Last modified September 5, 2006. Version 1. Checksum: 09F973A1C819BCC2	FASTA	125	13,588
	10 20 30 40 50 60 MLDDATPLFT QIAQRLTEEI ADGTLAEGAR VPSTNELAAY YRINPATAAR GLGVLTDDGL 70 80 90 100 110 120 LEKRRGIGMF VAPGARARLL DERRRQFAER YVQPLVAEAG RLGIDPDELV ALIRQASPTQ TGIAR

References

[1]

"Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography." Normand P., Lapierre P., Tisa L.S., Gogarten J.P., Alloisio N., Bagnarol E., Bassi C.A., Berry A.M., Bickhart D.M., Choisne N., Couloux A., Cournoyer B., Cruveiller S., Daubin V., Demange N., Francino M.P., Goltsman E., Huang Y. , Kopp O.R., Labarre L., Lapidus A., Lavire C., Marechal J., Martinez M., Mastronunzio J.E., Mullin B.C., Niemann J., Pujic P., Rawnsley T., Rouy Z., Schenowitz C., Sellstedt A., Tavares F., Tomkins J.P., Vallenet D., Valverde C., Wall L.G., Wang Y., Medigue C., Benson D.R. Genome Res. 17:7-15(2007) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ACN14a.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CT573213 Genomic DNA. Translation: CAJ62388.1.
RefSeq	YP_713949.1. NC_008278.1.
3D structure databases
ProteinModelPortal	Q0RJC4.
ModBase	Search...
Protein-protein interaction databases
STRING	326424.FRAAL3745.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4230949.
KEGG	fal:FRAAL3745.
PATRIC	21916968. VBIFraAln347_3440.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1725.
HOGENOM	HOG000259574.
OMA	FYQINPA.
Enzyme and pathway databases
BioCyc	FALN326424:GJ82-3694-MONOMER.
Family and domain databases
Gene3D	1.10.10.10. 1 hit.
InterPro	IPR000524. Tscrpt_reg_HTH_GntR. IPR011991. WHTH_DNA-bd_dom. [Graphical view]
Pfam	PF00392. GntR. 1 hit. [Graphical view]
SMART	SM00345. HTH_GNTR. 1 hit. [Graphical view]
PROSITE	PS50949. HTH_GNTR. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q0RJC4_FRAAA

Accession

Primary (citable) accession number: Q0RJC4

Entry history

Integrated into UniProtKB/TrEMBL:	September 5, 2006
Last sequence update:	September 5, 2006
Last modified:	May 1, 2013
This is version 44 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)