Q0RHK2 (Q0RHK2_FRAAA) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative uncharacterized protein EMBL CAJ63024.1

Gene names

Ordered Locus Names:

FRAAL4382

Organism

Frankia alni (strain ACN14a) [Complete proteome] [HAMAP] EMBL CAJ63024.1

Taxonomic identifier

326424 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Frankineae › Frankiaceae › Frankia › Frankia alni

Protein attributes

Sequence length	581 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q0RHK2 [UniParc]. Last modified September 5, 2006. Version 1. Checksum: 7B0B2F6E91E3D2CB	FASTA	581	63,077
	10 20 30 40 50 60 MGSDDAGGDH ARGSRLAEYR SRRHSGRTPE PDVSPLADAG DDGGRRTPRS QERPTSPAPP 70 80 90 100 110 120 PPDHTGDDQN GRGDRFVIHE HHARRLHWDV RLERDGVLVS WAVPRGLPTD SRRNHLAVRT 130 140 150 160 170 180 EDHPLAYADF AGTIPKGEYG AGEVSVWDRG RYRLESWSAE KVKVTLLGER VQGRYAFFAT 190 200 210 220 230 240 GRAHGGGTGS DQRSDRGDRN WMVHRMDPRG DTDPGGTDPD GTGQPRRAGR PARTDPARSP 250 260 270 280 290 300 DLPGGTESRD SMDPPGDPER TPMPGRMAPM LAVPAAAPPE GDDWAYEVKW DGVRALAFVD 310 320 330 340 350 360 GGRPRLRSRS GHDVTDVFPE LHTLGPAFGA TQVILDGEIV AFGPAGTPDF ELLSHRVHIA 370 380 390 400 410 420 TPAIARRAAA TIPVRYLVFD LLFLDGHSLL AWPYSGRRAL LADLADRGRL RISEELVGTG 430 440 450 460 470 480 DEVVAASAAA GLEGVVAKRR SSPYQPGRRS VDWVKVRHVR RQSVLVGGWE PGTGRRADRI 490 500 510 520 530 540 GALLVGVATP AGPRYAGQVG TGFSEATLDR LAALLAPLRR SDPPLRDVPA EVARGAVWVD 550 560 570 580 PELIAEVEFT SWTTDGRLRH PSFQGLRIDI SPADTARMEE T

References

[1]

"Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography." Normand P., Lapierre P., Tisa L.S., Gogarten J.P., Alloisio N., Bagnarol E., Bassi C.A., Berry A.M., Bickhart D.M., Choisne N., Couloux A., Cournoyer B., Cruveiller S., Daubin V., Demange N., Francino M.P., Goltsman E., Huang Y. , Kopp O.R., Labarre L., Lapidus A., Lavire C., Marechal J., Martinez M., Mastronunzio J.E., Mullin B.C., Niemann J., Pujic P., Rawnsley T., Rouy Z., Schenowitz C., Sellstedt A., Tavares F., Tomkins J.P., Vallenet D., Valverde C., Wall L.G., Wang Y., Medigue C., Benson D.R. Genome Res. 17:7-15(2007) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ACN14a.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CT573213 Genomic DNA. Translation: CAJ63024.1.
RefSeq	YP_714572.1. NC_008278.1.
3D structure databases
ProteinModelPortal	Q0RHK2.
ModBase	Search...
Protein-protein interaction databases
STRING	326424.FRAAL4382.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4237124.
KEGG	fal:FRAAL4382.
PATRIC	21918156. VBIFraAln347_4034.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000222509.
KO	K01971.
OMA	RINAGAQ.
ProtClustDB	CLSK2531288.
Enzyme and pathway databases
BioCyc	FALN326424:GJ82-4317-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR014146. DNA_pol_LigD_ligase_dom. IPR014144. LigD_PE_domain. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF13298. LigD_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q0RHK2_FRAAA

Accession

Primary (citable) accession number: Q0RHK2

Entry history

Integrated into UniProtKB/TrEMBL:	September 5, 2006
Last sequence update:	September 5, 2006
Last modified:	May 1, 2013
This is version 47 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)