Q0RD04 (Q0RD04_FRAAA) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Transcriptional regulator (MerR-family) EMBL CAJ64670.1

Gene names

Ordered Locus Names:

FRAAL6046

Organism

Frankia alni (strain ACN14a) [Complete proteome] [HAMAP] EMBL CAJ64670.1

Taxonomic identifier

326424 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Frankineae › Frankiaceae › Frankia › Frankia alni

Protein attributes

Sequence length	274 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Sequence similarities

Contains 1 HTH merR-type DNA-binding domain. RuleBase RU000703

Ontologies

Keywords
Ligand	DNA-binding RuleBase RU000703
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	metabolic process Inferred from electronic annotation. Source: GOC
Molecular_function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW catalytic activity Inferred from electronic annotation. Source: InterPro nucleotide binding Inferred from electronic annotation. Source: InterPro sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q0RD04 [UniParc]. Last modified September 5, 2006. Version 1. Checksum: C9CBE2B65D42D25A	FASTA	274	29,493
	10 20 30 40 50 60 MALLTIGEFA RLSRLSPKAL RLYDELGLLR PRQVDPLTGY RRYAPEQLEE ARLVAWLRRL 70 80 90 100 110 120 GMPLARIRRI RELDGPATAR EVAAFLADAV ARANRAVRDL VDLDPDPDPG ANAGAEVDPA 130 140 150 160 170 180 GASRAVGTTL TALLWTGSAL ALVHIGDSRA YLLRGGELRQ ITHDHTFVRS MVEDGRLRPE 190 200 210 220 230 240 EAATHPQRLL LLRALDGGAA TFPDIGLREV RRGDRYLLCS DGLSGAVPAA ELHRVLVTTT 250 260 270 EPEQAVRALV ALANGSGGAD NVTCVVADVV PAVT

References

[1]

"Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography." Normand P., Lapierre P., Tisa L.S., Gogarten J.P., Alloisio N., Bagnarol E., Bassi C.A., Berry A.M., Bickhart D.M., Choisne N., Couloux A., Cournoyer B., Cruveiller S., Daubin V., Demange N., Francino M.P., Goltsman E., Huang Y. , Kopp O.R., Labarre L., Lapidus A., Lavire C., Marechal J., Martinez M., Mastronunzio J.E., Mullin B.C., Niemann J., Pujic P., Rawnsley T., Rouy Z., Schenowitz C., Sellstedt A., Tavares F., Tomkins J.P., Vallenet D., Valverde C., Wall L.G., Wang Y., Medigue C., Benson D.R. Genome Res. 17:7-15(2007) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ACN14a.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CT573213 Genomic DNA. Translation: CAJ64670.1.
RefSeq	YP_716184.1. NC_008278.1.
3D structure databases
ProteinModelPortal	Q0RD04.
ModBase	Search...
Protein-protein interaction databases
STRING	326424.FRAAL6046.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4234368.
KEGG	fal:FRAAL6046.
PATRIC	21921186. VBIFraAln347_5535.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0789.
HOGENOM	HOG000235782.
OMA	NQDTAYA.
Enzyme and pathway databases
BioCyc	FALN326424:GJ82-5943-MONOMER.
Family and domain databases
Gene3D	3.60.40.10. 1 hit.
InterPro	IPR009061. DNA-bd_dom_put. IPR001932. PP2C-like. IPR015655. Protein_Pase_2C. IPR000551. Tscrpt_reg_HTH_MerR. [Graphical view]
PANTHER	PTHR13832. PTHR13832. 1 hit.
SMART	SM00422. HTH_MERR. 1 hit. SM00331. PP2C_SIG. 1 hit. SM00332. PP2Cc. 1 hit. [Graphical view]
SUPFAM	SSF81606. PP2C-related. 1 hit. SSF46955. Putativ_DNA_bind. 1 hit.
PROSITE	PS00552. HTH_MERR_1. 1 hit. PS50937. HTH_MERR_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q0RD04_FRAAA

Accession

Primary (citable) accession number: Q0RD04

Entry history

Integrated into UniProtKB/TrEMBL:	September 5, 2006
Last sequence update:	September 5, 2006
Last modified:	May 1, 2013
This is version 53 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)