Q0RCW9 (Q0RCW9_FRAAA) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
4-aminobutyrate aminotransferase, PLP-dependent EMBL CAJ64705.1
EC=2.6.1.19 EMBL CAJ64705.1

Gene names

Name:	gabT EMBL CAJ64705.1
Ordered Locus Names:	FRAAL6081

Organism

Frankia alni (strain ACN14a) [Complete proteome] [HAMAP] EMBL CAJ64705.1

Taxonomic identifier

326424 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Frankineae › Frankiaceae › Frankia › Frankia alni

Protein attributes

Sequence length	473 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. RuleBase RU003560

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU003560
Molecular function	Aminotransferase EMBL CAJ64705.1 Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	gamma-aminobutyric acid metabolic process Inferred from electronic annotation. Source: InterPro
Molecular_function	4-aminobutyrate transaminase activity Inferred from electronic annotation. Source: EC pyridoxal phosphate binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q0RCW9 [UniParc]. Last modified September 5, 2006. Version 1. Checksum: A912B82E6011A5CB	FASTA	473	49,038
	10 20 30 40 50 60 MPWWTAAGEQ AGADEMNPPN VPARGGPGLP QIRRLVTEIP GPRSRALAAR RAGAVARGVG 70 80 90 100 110 120 ETLPVYVHAA GGGVVVDVDG NSLIDFGSGI AVVSVGNAAD GVVAAVREQV GRFTHTCFMI 130 140 150 160 170 180 TPYEGYVAVC EALNRLTPGD HDKRSALFNS GAEAVENAVK IARSATGRAA IVVFEHAYHG 190 200 210 220 230 240 RTNLTLAMTA KSAPYKAGFG PFAPEVYRVP LAYPYRWPTG REHCGEQAAA RVIELVRDEI 250 260 270 280 290 300 GAGEVAALVI EPIQGEGGFI VPGRGFLPRL AEFCADAGIL FVADEIQTGF ARTGTMFACE 310 320 330 340 350 360 DEGVVPDLIT TAKGIAGGMP LAAVTGRAEI MDAPQVGGLG GTYGGNPAAC AAALAAIGFI 370 380 390 400 410 420 ESADLAARAR RIGELALPRL RALAARYDVI GDVRGRGAML ALELVRGGGD TRPDRELTGA 430 440 450 460 470 VAAACHRRGL IVLTAGTWGN VLRLLPPLVM DPALLLAGLD VLDEAFAEVT AAR

References

[1]

"Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography." Normand P., Lapierre P., Tisa L.S., Gogarten J.P., Alloisio N., Bagnarol E., Bassi C.A., Berry A.M., Bickhart D.M., Choisne N., Couloux A., Cournoyer B., Cruveiller S., Daubin V., Demange N., Francino M.P., Goltsman E., Huang Y. , Kopp O.R., Labarre L., Lapidus A., Lavire C., Marechal J., Martinez M., Mastronunzio J.E., Mullin B.C., Niemann J., Pujic P., Rawnsley T., Rouy Z., Schenowitz C., Sellstedt A., Tavares F., Tomkins J.P., Vallenet D., Valverde C., Wall L.G., Wang Y., Medigue C., Benson D.R. Genome Res. 17:7-15(2007) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ACN14a.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CT573213 Genomic DNA. Translation: CAJ64705.1.
RefSeq	YP_716219.1. NC_008278.1.
3D structure databases
ProteinModelPortal	Q0RCW9.
ModBase	Search...
Protein-protein interaction databases
STRING	326424.FRAAL6081.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4237202.
KEGG	fal:FRAAL6081.
PATRIC	21921258. VBIFraAln347_5571.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0160.
HOGENOM	HOG000020206.
KO	K07250.
OMA	PGTHEKR.
ProtClustDB	PRK06058.
Enzyme and pathway databases
BioCyc	FALN326424:GJ82-5978-MONOMER.
Family and domain databases
Gene3D	3.40.640.10. 1 hit. 3.90.1150.10. 1 hit.
InterPro	IPR004632. 4NH2But_aminotransferase_bac. IPR005814. Aminotrans_3. IPR015424. PyrdxlP-dep_Trfase. IPR015421. PyrdxlP-dep_Trfase_major_sub1. IPR015422. PyrdxlP-dep_Trfase_major_sub2. [Graphical view]
PANTHER	PTHR11986. PTHR11986. 1 hit.
Pfam	PF00202. Aminotran_3. 1 hit. [Graphical view]
SUPFAM	SSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMs	TIGR00700. GABAtrnsam. 1 hit.
PROSITE	PS00600. AA_TRANSFER_CLASS_3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q0RCW9_FRAAA

Accession

Primary (citable) accession number: Q0RCW9

Entry history

Integrated into UniProtKB/TrEMBL:	September 5, 2006
Last sequence update:	September 5, 2006
Last modified:	May 1, 2013
This is version 45 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)