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Protein
Submitted name:

PDZ and LIM domain 4

Gene

pdlim4

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Keywordsi

LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
PDZ and LIM domain 4Imported
Submitted name:
PDZ-LIM protein RILImported
Gene namesi
Name:pdlim4Imported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
Proteomesi
  • UP000000437 Componenti: Chromosome 21

Organism-specific databases

ZFINiZDB-GENE-070308-5. pdlim4.

PTM / Processingi

Proteomic databases

PaxDbiQ0PWB9.

Expressioni

Gene expression databases

BgeeiENSDARG00000068973.

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000090750.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 84PDZInterPro annotationAdd BLAST84
Domaini272 – 331LIM zinc-bindingInterPro annotationAdd BLAST60

Keywords - Domaini

LIM domainPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

eggNOGiKOG1703. Eukaryota.
ENOG410XRD4. LUCA.
GeneTreeiENSGT00590000082980.
HOGENOMiHOG000290704.
HOVERGENiHBG061371.
OMAiHIDPEAQ.
OrthoDBiEOG091G0A6C.
TreeFamiTF106408.

Family and domain databases

InterProiView protein in InterPro
IPR031847. DUF4749.
IPR001478. PDZ.
IPR036034. PDZ_sf.
IPR001781. Znf_LIM.
PfamiView protein in Pfam
PF15936. DUF4749. 1 hit.
PF00412. LIM. 1 hit.
PF00595. PDZ. 1 hit.
SMARTiView protein in SMART
SM00132. LIM. 1 hit.
SM00228. PDZ. 1 hit.
SUPFAMiSSF50156. SSF50156. 1 hit.
PROSITEiView protein in PROSITE
PS00478. LIM_DOMAIN_1. 1 hit.
PS50023. LIM_DOMAIN_2. 1 hit.
PS50106. PDZ. 1 hit.

Sequencei

Sequence statusi: Complete.

Q0PWB9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSHTVTLSGP SPWGFRLVGG RDFSTPLTIS RITPASKAAQ SNLSPGDTIL
60 70 80 90 100
AINGESTESM THMEAQNRIK ACTDQLVLAI CRSGKAWSPT GMEELKTSPF
110 120 130 140 150
SPTLESDSQT FRPISSGYSP TPKSPSPKSP ITGAVPYNNG GSRPVYNNPA
160 170 180 190 200
GLYSHNNGNG ALPKQMSGLS LGSPHSFSPE PPVNSSGNRN GFDTQSDVYR
210 220 230 240 250
MLLDYEEPVS APKQSGSFKY LQGILEAEDG GVSPVDRSGV RGLRSPVKSP
260 270 280 290 300
VPKLGSPITA PLAPIPGLQN LPQCTRCANG IVGVIVKARD KLYHPDCFMC
310 320 330 340
DDCGLNLKQR GYFFIDDNLY CETHAKARVQ PPEGYDVVAV YPNSKVELV
Length:349
Mass (Da):37,329
Last modified:September 5, 2006 - v1
Checksum:i706EEF4E1B149ED4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR792441 Genomic DNA. No translation available.
CU651601 Genomic DNA. No translation available.
BC133974 mRNA. Translation: AAI33975.1.
DQ679227 mRNA. Translation: ABG74895.1.
RefSeqiNP_001036161.1. NM_001042696.2.
UniGeneiDr.88777.

Genome annotation databases

EnsembliENSDART00000099978; ENSDARP00000090750; ENSDARG00000068973.
GeneIDi569404.

Similar proteinsi

Entry informationi

Entry nameiQ0PWB9_DANRE
AccessioniPrimary (citable) accession number: Q0PWB9
Entry historyiIntegrated into UniProtKB/TrEMBL: September 5, 2006
Last sequence update: September 5, 2006
Last modified: January 31, 2018
This is version 97 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported