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Protein
Submitted name:

POMT2

Gene

pomt2

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  • dolichyl-phosphate-mannose-protein mannosyltransferase activity Source: ZFIN

GO - Biological processi

  • protein O-linked mannosylation Source: ZFIN
Complete GO annotation...

Protein family/group databases

CAZyiGT39. Glycosyltransferase Family 39.

Names & Taxonomyi

Protein namesi
Submitted name:
POMT2Imported
Gene namesi
Name:pomt2Imported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio

Organism-specific databases

ZFINiZDB-GENE-070112-1002. pomt2.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei152 – 17423HelicalSequence analysisAdd
BLAST
Transmembranei180 – 19718HelicalSequence analysisAdd
BLAST
Transmembranei204 – 22320HelicalSequence analysisAdd
BLAST
Transmembranei235 – 26834HelicalSequence analysisAdd
BLAST
Transmembranei289 – 31426HelicalSequence analysisAdd
BLAST
Transmembranei603 – 62624HelicalSequence analysisAdd
BLAST
Transmembranei647 – 66721HelicalSequence analysisAdd
BLAST
Transmembranei673 – 69220HelicalSequence analysisAdd
BLAST
Transmembranei713 – 73119HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Proteomic databases

PaxDbiQ0PIP2.

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000111637.

Structurei

3D structure databases

ProteinModelPortaliQ0PIP2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini344 – 40057MIRInterPro annotationAdd
BLAST
Domaini410 – 46657MIRInterPro annotationAdd
BLAST
Domaini471 – 52858MIRInterPro annotationAdd
BLAST

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiKOG3359. Eukaryota.
COG1928. LUCA.
HOGENOMiHOG000157526.
HOVERGENiHBG096391.
KOiK00728.
PhylomeDBiQ0PIP2.

Family and domain databases

InterProiIPR027005. GlyclTrfase_39-like.
IPR003342. Glyco_trans_39/83.
IPR016093. MIR_motif.
IPR032421. PMT_4TMC.
[Graphical view]
PANTHERiPTHR10050. PTHR10050. 1 hit.
PfamiPF02815. MIR. 1 hit.
PF02366. PMT. 1 hit.
PF16192. PMT_4TMC. 1 hit.
[Graphical view]
SMARTiSM00472. MIR. 3 hits.
[Graphical view]
SUPFAMiSSF82109. SSF82109. 1 hit.
PROSITEiPS50919. MIR. 3 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q0PIP2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDVRPKENFS QRQDTSAVRH RKTCKVNERA EIPSQPHNGT INGVNKRITK
60 70 80 90 100
REGGERISSP SRDAHVPVFI LALVIVLSVS TRFYKITEPP HVCWDETHFG
110 120 130 140 150
KMGSYYINRT FFFDVHPPLG KMLIGLAGYL TGYDGTFPFI KPGDKYEHHN
160 170 180 190 200
YWGMRAFCAA LGSCLPPFAF LVVLELSQSS TAALIAASLL IFDTGCITLS
210 220 230 240 250
QYILLDPILM FFIMGSVLCM VKFNTQRLGP FSFSWWFWLL LTGLCLSGSL
260 270 280 290 300
GVKFVGLFVI LLVGINTALD LWRLLGDLSL SLVDFGKHLL ARVFGLIMLP
310 320 330 340 350
LFLYTTIFAI HFIVLNRSGP GDGFFSSAFQ SRLIGNNPHN ASMPEYLAYG
360 370 380 390 400
SVITVKNLRI AGGYLHSHWH LYPEGVGAHQ QQVTAYLHKD YNNLWLVKRL
410 420 430 440 450
DNSDDLTGSP ELVRHGDIIR LEHKETTRNL HSHFHEAPLT KKHLQVTGYG
460 470 480 490 500
INGSGDVNDL WQVEVCGGRK GDPVKVLRSK VRFLHRATGC VLCSSGKTLP
510 520 530 540 550
KWGWEQVEVT CSPYVKETPN SQWNIEDHIN PKLPNISLAV LKPTFLEILW
560 570 580 590 600
ESHIVMIRGN SGLKPKDNEM SSKPWHWPIN YQGLRFSGVN ETEYRVYLLG
610 620 630 640 650
NPVIWWLNLL SLALFVILLT VASLAVQRRV KMEGMMKVHC HTLMEGGGML
660 670 680 690 700
FLGWLLHYLP FYIMGRILYY HHYFPAMMFS SMLTGITLDI LLQNLQLLFS
710 720 730 740 750
SSLSHYLMRG GQSVLLLGFI YSFYLFHPLS YGMRGPLAHD SASSMAGLRW

MESWEF
Length:756
Mass (Da):85,687
Last modified:September 5, 2006 - v1
Checksum:iA41B5CFC9CE27F64
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DQ826749 mRNA. Translation: ABH03467.1.
RefSeqiNP_001038498.1. NM_001045033.1.
UniGeneiDr.79504.

Genome annotation databases

GeneIDi563878.
KEGGidre:563878.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DQ826749 mRNA. Translation: ABH03467.1.
RefSeqiNP_001038498.1. NM_001045033.1.
UniGeneiDr.79504.

3D structure databases

ProteinModelPortaliQ0PIP2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000111637.

Protein family/group databases

CAZyiGT39. Glycosyltransferase Family 39.

Proteomic databases

PaxDbiQ0PIP2.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi563878.
KEGGidre:563878.

Organism-specific databases

CTDi29954.
ZFINiZDB-GENE-070112-1002. pomt2.

Phylogenomic databases

eggNOGiKOG3359. Eukaryota.
COG1928. LUCA.
HOGENOMiHOG000157526.
HOVERGENiHBG096391.
KOiK00728.
PhylomeDBiQ0PIP2.

Miscellaneous databases

NextBioi20885117.

Family and domain databases

InterProiIPR027005. GlyclTrfase_39-like.
IPR003342. Glyco_trans_39/83.
IPR016093. MIR_motif.
IPR032421. PMT_4TMC.
[Graphical view]
PANTHERiPTHR10050. PTHR10050. 1 hit.
PfamiPF02815. MIR. 1 hit.
PF02366. PMT. 1 hit.
PF16192. PMT_4TMC. 1 hit.
[Graphical view]
SMARTiSM00472. MIR. 3 hits.
[Graphical view]
SUPFAMiSSF82109. SSF82109. 1 hit.
PROSITEiPS50919. MIR. 3 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genes required for functional glycosylation of dystroglycan are conserved in zebrafish."
    Moore C.J., Goh H.T., Hewitt J.E.
    Genomics 92:159-167(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiQ0PIP2_DANRE
AccessioniPrimary (citable) accession number: Q0PIP2
Entry historyi
Integrated into UniProtKB/TrEMBL: September 5, 2006
Last sequence update: September 5, 2006
Last modified: May 11, 2016
This is version 66 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.