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Unreviewed, UniProtKB/TrEMBL Q0PCR5 (Q0PCR5_MOUSE)

Last modified January 19, 2010. Version 27. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information

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Names and origin

Protein namesSubmitted name:
    Voltage-dependent calcium channel splice variant 1.2-b EMBL BAF03166.1
Gene names
Name: Cacna1c MGI 103013
Synonyms: CaV1.2-b EMBL BAF03166.1
OrganismMus musculus (Mouse) EMBL BAF03166.1
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus

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Protein attributes

Sequence length138 AA.
Sequence statusFragment.
Protein existenceEvidence at transcript level.

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General annotation (Comments)

Subcellular location

Membrane; Multi-pass membrane protein By similarity RuleBase RU003808V0.

Sequence similarities

Belongs to the calcium channel alpha-1 subunit (TC 1.A.1.11) family. [View classification]

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Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Experimental info

Non-terminal residue11 EMBL BAF03166.1
Non-terminal residue1381 EMBL BAF03166.1

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Sequences

Sequence LengthMass (Da)Tools
Q0PCR5-1 [UniParc].

Last modified September 19, 2006. Version 1.
Checksum: C9528C40B999AF89

FASTA13815,927
        10         20         30         40         50         60 
TMEGWTDVLY WVNDAVGRDW PWIYFVTLII IGSFFVLNLV LGVLSGEFSK EREKAKARGD 

        70         80         90        100        110        120 
FQKLREKQQL EEDLKGYLDW ITQAEDIDPE NEDEGMDEDK PRNRGAPAGL HDQKKGKFAW 

       130 
FSHSTETHVS MPTSETES

« Hide

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References

[1]"Identification of a cardiac isoform of the murine calcium channel alpha1C (Cav1.2-a) subunit and its preferential binding with the beta2 subunit."
Murakami M., Ohba T., Takahashi Y., Watanabe H., Miyoshi I., Nakayama S., Ono K., Ito H., Iijima T.
J. Mol. Cell. Cardiol. 41:115-125(2006) [PubMed: 16787652] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Tissue: Aorta EMBL BAF03166.1.
+Additional computationally mapped references.

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Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AB259050 mRNA. Translation: BAF03166.1.
IPIIPI00229513.
UniGeneMm.436656

3D structure databases

ModBaseSearch...

Genome annotation databases

EnsemblENSMUST00000078320; ENSMUSP00000077433; ENSMUSG00000051331; Mus musculus. [Genome view]

Organism-specific databases

MGIMGI:103013. Cacna1c.

Phylogenomic databases

HOVERGENQ0PCR5.

Gene expression databases

ArrayExpressQ0PCR5.
BgeeQ0PCR5.
GenevestigatorQ0PCR5.

Family and domain databases

InterProIPR005821. Ion_trans.
IPR005451. VDCC_L_a1csu.
IPR002077. VDCCAlpha1.
[Graphical view]
PANTHERPTHR10037:SF47. LVDCCAlpha1C. 1 hit.
PfamPF00520. Ion_trans. 1 hit.
[Graphical view]
PRINTSPR00167. CACHANNEL.
ProtoNetSearch...

Other Resources

SOURCESearch...

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Entry information

Entry nameQ0PCR5_MOUSE
AccessionPrimary (citable) accession number: Q0PCR5
Entry history
Integrated into UniProtKB/TrEMBL: September 19, 2006
Last sequence update: September 19, 2006
Last modified: January 19, 2010
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information