Reviewed, UniProtKB/Swiss-Prot Q0P7T9 (RL6_CAMJE)

Names and origin

Protein names

Recommended name:
    50S ribosomal protein L6

Gene names

Name:	rplF
Ordered Locus Names:	Cj1692c

Organism

Campylobacter jejuni [Complete proteome] [HAMAP]

Taxonomic identifier

197 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Epsilonproteobacteria › Campylobacterales › Campylobacteraceae › Campylobacter

Protein attributes

Sequence length	178 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at protein level.

General annotation (Comments)

Function	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center By similarity.
Subunit structure	Part of the 50S ribosomal subunit By similarity.
Sequence similarities	Belongs to the ribosomal protein L6P family.

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: HAMAP
Cellular component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	protein binding Inferred from physical interaction. Source: IntAct rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Binary interactions

With	Entry	#Exp.	IntAct	Notes
flgD	Q0PC84	1	EBI-1191921,EBI-1191687
flhF	O52908	1	EBI-1191921,EBI-1329406
fliG	Q0PBJ0	1	EBI-1191921,EBI-1191336
fliM	Q0PC73	1	EBI-1191921,EBI-1191095
fliN	O32370	1	EBI-1191921,EBI-1191320
fliS	Q0PAW7	1	EBI-1191921,EBI-1191312

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 178	178	50S ribosomal protein L6 HAMAP MF_01365		PRO_0000265237

Sequences

	Sequence		Length	Mass (Da)
	Q0P7T9-1 [UniParc]. Last modified September 19, 2006. Version 1. Checksum: 5C9B83EF53077543	FASTA	178	19,587
	10 20 30 40 50 60 MSRIGKQPIA IPAGVEVKLE GNLLKFKKGN LAKELDTKAN VNVEIKDNNI LFSPKGEDRQ 70 80 90 100 110 120 SRAYWGTYRA LAYNIVVGLT QGFSKTLEIN GVGYKAALKG KVLELSLGFS HPINYDIPEG 130 140 150 160 170 IEIVVDKNTI AVKGSDKQVV GQVAAQIREF RPPEPYKGKG VKYSDERIIR KAGKTSKK

References

[1]

"The genome sequence of the food-borne pathogen Campylobacter jejuni reveals hypervariable sequences." Parkhill J., Wren B.W., Mungall K.L., Ketley J.M., Churcher C.M., Basham D., Chillingworth T., Davies R.M., Feltwell T., Holroyd S., Jagels K., Karlyshev A.V., Moule S., Pallen M.J., Penn C.W., Quail M.A., Rajandream M.A., Rutherford K.M. , van Vliet A.H.M., Whitehead S., Barrell B.G. Nature 403:665-668(2000) [PubMed: 10688204] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: NCTC 11168 / Serotype O:2.

Cross-references

Sequence databases
EMBLGenBankDDBJ	AL111168 Genomic DNA. Translation: CAL35786.1.
PIR	H81266.
RefSeq	YP_002345058.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
IntAct	Q0P7T9. 144 interactions.
Genome annotation databases
GeneID	905966.
GenomeReviews	Gene locus Cj1692c in contig AL111168_GR.
KEGG	cje:Cj1692c.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	Q0P7T9.
OMA	Q0P7T9. RTLVANM.
Family and domain databases
HAMAP	MF_01365. [Tree]
InterPro	IPR000702. Ribosomal_L6. IPR020040. Ribosomal_L6_a/b-dom. IPR002358. Ribosomal_L6_CS. IPR019906. Ribosomal_L6_sg. [Graphical view]
Gene3D	G3DSA:3.90.930.12. Ribosomal_L6. 2 hits.
PANTHER	PTHR11655. Ribosomal_L6. 1 hit.
Pfam	PF00347. Ribosomal_L6. 2 hits. [Graphical view]
PIRSF	PIRSF002162. Ribosomal_L6. 1 hit.
PRINTS	PR00059. RIBOSOMALL6.
ProDom	PD002236. Ribosomal_L6. 1 hit. [Graphical view] [Entries sharing at least one domain]
TIGRFAMs	TIGR03654. L6_bact. 1 hit.
PROSITE	PS00525. RIBOSOMAL_L6_1. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

RL6_CAMJE

Accession

Primary (citable) accession number: Q0P7T9

Entry history

Integrated into UniProtKB/Swiss-Prot:	December 12, 2006
Last sequence update:	September 19, 2006
Last modified:	June 16, 2009
This is version 23 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)