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Protein

RNA polymerase sigma factor

Gene

rpoE

Organism
Escherichia coli
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-KW
  2. sequence-specific DNA binding transcription factor activity Source: InterPro
  3. sigma factor activity Source: UniProtKB-KW

GO - Biological processi

  1. DNA-templated transcription, initiation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Sigma factorUniRule annotationSAAS annotation

Keywords - Biological processi

Stress responseImported, Transcription, Transcription regulation

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Recommended name:
RNA polymerase sigma factorUniRule annotation
Gene namesi
Name:rpoEImported
ORF Names:BC97_0216040Imported, BC99_0300545Imported, BN1008_4328Imported, BN17_18601Imported, BU34_22545Imported, BU65_01430Imported, BU66_01490Imported, BU67_03840Imported, BU68_01125Imported, BU69_10490Imported, BU70_20950Imported, CF57_07525Imported, CF58_21975Imported, CF59_21950Imported, CF60_21615Imported, CF61_08210Imported, DA88_11690Imported, DC22_19415Imported, DC24_14495Imported, DH22_1167Imported, DO98_12640Imported, DP79_24870Imported, ECHMS174_02588Imported, ECONIH1_14995Imported, ECRV308_02582Imported, ECs3439Imported, EH61_21265Imported, EH62_07935Imported, EH63_21810Imported, EH64_22950Imported, EH65_12725Imported, EH66_05500Imported, EL75_1074Imported, EL77_1110Imported, EL78_1101Imported, EL79_1085Imported, EL80_1087Imported, EP08_03925Imported, GR02_04460Imported, GR03_08395Imported, GR04_23160Imported, GR05_01900Imported, GR06_00090Imported, GR07_02125Imported, GS37_14585Imported, GS38_22950Imported, GS39_23570Imported, GS40_18725Imported, GY32_07400Imported, JD73_17235Imported, JO86_03950Imported, JO87_06310Imported, JO88_03700Imported, JO89_15200Imported, JO90_08345Imported, JQ56_00195Imported, JQ57_05320Imported, JQ58_15700Imported, JQ59_11030Imported, KV39_04790Imported, LF82_1962Imported, LJ08_2396Imported, LS39_03900Imported, LS40_03000Imported, LS41_12890Imported, LS42_07290Imported, LS89_02835Imported, LS90_02815Imported, PGD_00662Imported
OrganismiEscherichia coliImported
Taxonomic identifieri562 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
ProteomesiUP000010085: Chromosome

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4LUPX-ray1.20A/C3-92[»]
ProteinModelPortaliQ0P6M2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the sigma-70 factor family. ECF subfamily.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000094755.
KOiK03088.
OMAiDAENYES.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR000838. RNA_pol_sigma70_ECF_CS.
IPR007627. RNA_pol_sigma70_r2.
IPR013249. RNA_pol_sigma70_r4_t2.
IPR014286. RNA_pol_sigma70_RpoE.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF04542. Sigma70_r2. 1 hit.
PF08281. Sigma70_r4_2. 1 hit.
[Graphical view]
SUPFAMiSSF88659. SSF88659. 1 hit.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02939. RpoE_Sigma70. 1 hit.
TIGR02937. sigma70-ECF. 1 hit.
PROSITEiPS01063. SIGMA70_ECF. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q0P6M2-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSEQLTDQVL VERVQKGDQK AFNLLVVRYQ HKVASLVSRY VPSGDVPDVV
60 70 80 90 100
QEAFIKAYRA LDSFRGDSAF YTWLYRIAVN TAKNYLVAQG RRPPSSDVDA
110 120 130 140 150
IEAENFESGG ALKEISNPEN LMLSEELRQI VFRTIESLPE DLRMAITLRE
160 170 180 190
LDGLSYEEIA AIMDCPVGTV RSRIFRAREA IDNKVQPLIR R
Length:191
Mass (Da):21,696
Last modified:September 19, 2006 - v1
Checksum:iC71EEF5939C3611E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY616598 Genomic DNA. Translation: AAZ80065.1.
EU897165 Genomic DNA. Translation: ACI79721.1.
EU897166 Genomic DNA. Translation: ACI79722.1.
EU897167 Genomic DNA. Translation: ACI79723.1.
EU897168 Genomic DNA. Translation: ACI79724.1.
EU897169 Genomic DNA. Translation: ACI79725.1.
CP007265 Genomic DNA. Translation: AHM31215.1.
CP007390 Genomic DNA. Translation: AHM33558.1.
CP007391 Genomic DNA. Translation: AHM38155.1.
CP007392 Genomic DNA. Translation: AHM44815.1.
CP007393 Genomic DNA. Translation: AHM49423.1.
CP007394 Genomic DNA. Translation: AHM53873.1.
CP009859 Genomic DNA. Translation: AIX64462.1.
CU651637 Genomic DNA. Translation: CAP77019.1.
HE964769 Genomic DNA. Translation: CCJ45076.1.
CCCP010000007 Genomic DNA. Translation: CDP70404.1.
HG976952 Genomic DNA. Translation: CDU37595.1.
LM993812 Genomic DNA. Translation: CDY60586.1.
LM995446 Genomic DNA. Translation: CDZ21388.1.
CCNI01000329 Genomic DNA. Translation: CEE10906.1.
JFFO01000084 Genomic DNA. Translation: EYB38972.1.
JFFN01000050 Genomic DNA. Translation: EYB46073.1.
JFFJ01000010 Genomic DNA. Translation: EYB55195.1.
JFFM01000011 Genomic DNA. Translation: EYB55225.1.
JFFK01000019 Genomic DNA. Translation: EYB58419.1.
JFFL01000130 Genomic DNA. Translation: EYB59905.1.
JJNV01000010 Genomic DNA. Translation: KCW96830.1.
JHEW01000028 Genomic DNA. Translation: KDM72317.1.
JHEZ01000024 Genomic DNA. Translation: KDM79683.1.
JHEX01000034 Genomic DNA. Translation: KDM85972.1.
JMKH01000021 Genomic DNA. Translation: KDN07943.1.
JJNT01000026 Genomic DNA. Translation: KDO89837.1.
JNBX01000105 Genomic DNA. Translation: KDP16542.1.
JMIZ01000006 Genomic DNA. Translation: KEO97555.1.
JMJA01000002 Genomic DNA. Translation: KEO99995.1.
JMJB01000001 Genomic DNA. Translation: KEP06404.1.
JMJD01000003 Genomic DNA. Translation: KEP09680.1.
JMJC01000003 Genomic DNA. Translation: KEP17933.1.
JMJE01000008 Genomic DNA. Translation: KEP20641.1.
JPQG01000003 Genomic DNA. Translation: KFD75417.1.
JEND02000002 Genomic DNA. Translation: KFF37315.1.
JENE03000001 Genomic DNA. Translation: KFF52761.1.
JNOG01000101 Genomic DNA. Translation: KFH75009.1.
JNOF01000014 Genomic DNA. Translation: KFH85430.1.
JNOH01000002 Genomic DNA. Translation: KFH86209.1.
JNOI01000001 Genomic DNA. Translation: KFH93047.1.
JNOJ01000003 Genomic DNA. Translation: KFH97069.1.
JNOE01000012 Genomic DNA. Translation: KFI00435.1.
JNNL01000005 Genomic DNA. Translation: KFV25156.1.
JNNJ01000031 Genomic DNA. Translation: KFV26362.1.
JNNK01000007 Genomic DNA. Translation: KFV33042.1.
JNNI01000008 Genomic DNA. Translation: KFV38187.1.
JRBB01000026 Genomic DNA. Translation: KGA88153.1.
JRIA01000009 Genomic DNA. Translation: KGI49062.1.
JPKJ01000009 Genomic DNA. Translation: KGM65911.1.
JPKH01000009 Genomic DNA. Translation: KGM70933.1.
JPKK01000008 Genomic DNA. Translation: KGM74936.1.
JPKL01000018 Genomic DNA. Translation: KGM83109.1.
JPMZ01000007 Genomic DNA. Translation: KGM84502.1.
JPUS01000074 Genomic DNA. Translation: KGP11676.1.
JPUT01000017 Genomic DNA. Translation: KGP13734.1.
JPUU01000002 Genomic DNA. Translation: KGP21251.1.
JPUD01000043 Genomic DNA. Translation: KGP39491.1.
JRKU01000003 Genomic DNA. Translation: KGP52952.1.
JRKV01000002 Genomic DNA. Translation: KGP55392.1.
JPIF01000021 Genomic DNA. Translation: KGT06855.1.
JPXK01000035 Genomic DNA. Translation: KGT12643.1.
JPXL01000013 Genomic DNA. Translation: KGT21295.1.
JPXJ01000017 Genomic DNA. Translation: KGT22379.1.
JPXM01000015 Genomic DNA. Translation: KGT28412.1.
JPXN01000011 Genomic DNA. Translation: KGT32482.1.
JROQ01000002 Genomic DNA. Translation: KHD43325.1.
JRQA01000018 Genomic DNA. Translation: KHD50251.1.
JRPZ01000013 Genomic DNA. Translation: KHD55788.1.
JRQB01000017 Genomic DNA. Translation: KHD58619.1.
RefSeqiYP_002557412.1. NC_011993.1.

Genome annotation databases

EnsemblBacteriaiAHM31215; AHM31215; BU34_22545.
AHM33558; AHM33558; CF57_07525.
AHM38155; AHM38155; CF61_08210.
AHM44815; AHM44815; CF58_21975.
AHM49423; AHM49423; CF59_21950.
AHM53873; AHM53873; CF60_21615.
CAP77019; CAP77019; LF82_1962.
CDU37595; CDU37595; PGD_00662.
EYB38972; EYB38972; BU70_20950.
EYB46073; EYB46073; BU69_10490.
EYB55195; EYB55195; BU65_01430.
EYB55225; EYB55225; BU68_01125.
EYB58419; EYB58419; BU66_01490.
EYB59905; EYB59905; BU67_03840.
KCW96830; KCW96830; DP79_24870.
KDM72317; KDM72317; DA88_11690.
KDM79683; KDM79683; DC24_14495.
KDM85972; KDM85972; DC22_19415.
KDN07943; KDN07943; DH22_1167.
KDO89837; KDO89837; DO98_12640.
KDP16542; KDP16542; EP08_03925.
KEO97555; KEO97555; EH66_05500.
KEO99995; KEO99995; EH65_12725.
KEP06404; KEP06404; EH64_22950.
KEP09680; KEP09680; EH62_07935.
KEP17933; KEP17933; EH63_21810.
KEP20641; KEP20641; EH61_21265.
GeneIDi7394209.
KEGGielf:LF82_1962.
PATRICi48655060. VBIEscCol74806_2570.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY616598 Genomic DNA. Translation: AAZ80065.1.
EU897165 Genomic DNA. Translation: ACI79721.1.
EU897166 Genomic DNA. Translation: ACI79722.1.
EU897167 Genomic DNA. Translation: ACI79723.1.
EU897168 Genomic DNA. Translation: ACI79724.1.
EU897169 Genomic DNA. Translation: ACI79725.1.
CP007265 Genomic DNA. Translation: AHM31215.1.
CP007390 Genomic DNA. Translation: AHM33558.1.
CP007391 Genomic DNA. Translation: AHM38155.1.
CP007392 Genomic DNA. Translation: AHM44815.1.
CP007393 Genomic DNA. Translation: AHM49423.1.
CP007394 Genomic DNA. Translation: AHM53873.1.
CP009859 Genomic DNA. Translation: AIX64462.1.
CU651637 Genomic DNA. Translation: CAP77019.1.
HE964769 Genomic DNA. Translation: CCJ45076.1.
CCCP010000007 Genomic DNA. Translation: CDP70404.1.
HG976952 Genomic DNA. Translation: CDU37595.1.
LM993812 Genomic DNA. Translation: CDY60586.1.
LM995446 Genomic DNA. Translation: CDZ21388.1.
CCNI01000329 Genomic DNA. Translation: CEE10906.1.
JFFO01000084 Genomic DNA. Translation: EYB38972.1.
JFFN01000050 Genomic DNA. Translation: EYB46073.1.
JFFJ01000010 Genomic DNA. Translation: EYB55195.1.
JFFM01000011 Genomic DNA. Translation: EYB55225.1.
JFFK01000019 Genomic DNA. Translation: EYB58419.1.
JFFL01000130 Genomic DNA. Translation: EYB59905.1.
JJNV01000010 Genomic DNA. Translation: KCW96830.1.
JHEW01000028 Genomic DNA. Translation: KDM72317.1.
JHEZ01000024 Genomic DNA. Translation: KDM79683.1.
JHEX01000034 Genomic DNA. Translation: KDM85972.1.
JMKH01000021 Genomic DNA. Translation: KDN07943.1.
JJNT01000026 Genomic DNA. Translation: KDO89837.1.
JNBX01000105 Genomic DNA. Translation: KDP16542.1.
JMIZ01000006 Genomic DNA. Translation: KEO97555.1.
JMJA01000002 Genomic DNA. Translation: KEO99995.1.
JMJB01000001 Genomic DNA. Translation: KEP06404.1.
JMJD01000003 Genomic DNA. Translation: KEP09680.1.
JMJC01000003 Genomic DNA. Translation: KEP17933.1.
JMJE01000008 Genomic DNA. Translation: KEP20641.1.
JPQG01000003 Genomic DNA. Translation: KFD75417.1.
JEND02000002 Genomic DNA. Translation: KFF37315.1.
JENE03000001 Genomic DNA. Translation: KFF52761.1.
JNOG01000101 Genomic DNA. Translation: KFH75009.1.
JNOF01000014 Genomic DNA. Translation: KFH85430.1.
JNOH01000002 Genomic DNA. Translation: KFH86209.1.
JNOI01000001 Genomic DNA. Translation: KFH93047.1.
JNOJ01000003 Genomic DNA. Translation: KFH97069.1.
JNOE01000012 Genomic DNA. Translation: KFI00435.1.
JNNL01000005 Genomic DNA. Translation: KFV25156.1.
JNNJ01000031 Genomic DNA. Translation: KFV26362.1.
JNNK01000007 Genomic DNA. Translation: KFV33042.1.
JNNI01000008 Genomic DNA. Translation: KFV38187.1.
JRBB01000026 Genomic DNA. Translation: KGA88153.1.
JRIA01000009 Genomic DNA. Translation: KGI49062.1.
JPKJ01000009 Genomic DNA. Translation: KGM65911.1.
JPKH01000009 Genomic DNA. Translation: KGM70933.1.
JPKK01000008 Genomic DNA. Translation: KGM74936.1.
JPKL01000018 Genomic DNA. Translation: KGM83109.1.
JPMZ01000007 Genomic DNA. Translation: KGM84502.1.
JPUS01000074 Genomic DNA. Translation: KGP11676.1.
JPUT01000017 Genomic DNA. Translation: KGP13734.1.
JPUU01000002 Genomic DNA. Translation: KGP21251.1.
JPUD01000043 Genomic DNA. Translation: KGP39491.1.
JRKU01000003 Genomic DNA. Translation: KGP52952.1.
JRKV01000002 Genomic DNA. Translation: KGP55392.1.
JPIF01000021 Genomic DNA. Translation: KGT06855.1.
JPXK01000035 Genomic DNA. Translation: KGT12643.1.
JPXL01000013 Genomic DNA. Translation: KGT21295.1.
JPXJ01000017 Genomic DNA. Translation: KGT22379.1.
JPXM01000015 Genomic DNA. Translation: KGT28412.1.
JPXN01000011 Genomic DNA. Translation: KGT32482.1.
JROQ01000002 Genomic DNA. Translation: KHD43325.1.
JRQA01000018 Genomic DNA. Translation: KHD50251.1.
JRPZ01000013 Genomic DNA. Translation: KHD55788.1.
JRQB01000017 Genomic DNA. Translation: KHD58619.1.
RefSeqiYP_002557412.1. NC_011993.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4LUPX-ray1.20A/C3-92[»]
ProteinModelPortaliQ0P6M2.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAHM31215; AHM31215; BU34_22545.
AHM33558; AHM33558; CF57_07525.
AHM38155; AHM38155; CF61_08210.
AHM44815; AHM44815; CF58_21975.
AHM49423; AHM49423; CF59_21950.
AHM53873; AHM53873; CF60_21615.
CAP77019; CAP77019; LF82_1962.
CDU37595; CDU37595; PGD_00662.
EYB38972; EYB38972; BU70_20950.
EYB46073; EYB46073; BU69_10490.
EYB55195; EYB55195; BU65_01430.
EYB55225; EYB55225; BU68_01125.
EYB58419; EYB58419; BU66_01490.
EYB59905; EYB59905; BU67_03840.
KCW96830; KCW96830; DP79_24870.
KDM72317; KDM72317; DA88_11690.
KDM79683; KDM79683; DC24_14495.
KDM85972; KDM85972; DC22_19415.
KDN07943; KDN07943; DH22_1167.
KDO89837; KDO89837; DO98_12640.
KDP16542; KDP16542; EP08_03925.
KEO97555; KEO97555; EH66_05500.
KEO99995; KEO99995; EH65_12725.
KEP06404; KEP06404; EH64_22950.
KEP09680; KEP09680; EH62_07935.
KEP17933; KEP17933; EH63_21810.
KEP20641; KEP20641; EH61_21265.
GeneIDi7394209.
KEGGielf:LF82_1962.
PATRICi48655060. VBIEscCol74806_2570.

Phylogenomic databases

HOGENOMiHOG000094755.
KOiK03088.
OMAiDAENYES.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR000838. RNA_pol_sigma70_ECF_CS.
IPR007627. RNA_pol_sigma70_r2.
IPR013249. RNA_pol_sigma70_r4_t2.
IPR014286. RNA_pol_sigma70_RpoE.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF04542. Sigma70_r2. 1 hit.
PF08281. Sigma70_r4_2. 1 hit.
[Graphical view]
SUPFAMiSSF88659. SSF88659. 1 hit.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02939. RpoE_Sigma70. 1 hit.
TIGR02937. sigma70-ECF. 1 hit.
PROSITEiPS01063. SIGMA70_ECF. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Complex mutation pattern in the design of a protoplast type L-form Escherichia coli."
    Siddiqui R.A., Heinze I., Platzer M.
    Submitted (APR-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: LW1655F+Imported.
  2. "A precise reconstruction of the emergence and constrained radiations of Escherichia coli O157 portrayed by backbone concatenomic analysis."
    Leopold S.R., Magrini V., Holt N.J., Shaikh N., Mardis E.R., Cagno J., Ogura Y., Iguchi A., Hayashi T., Mellmann A., Karch H., Besser T.E., Sawyer S.A., Whittam T.S., Tarr P.I.
    Proc. Natl. Acad. Sci. U.S.A. 106:8713-8718(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: 493/89Imported, 86-24Imported, 87-14Imported, TB182AImported and TW14359Imported.
  3. "Complete genome sequence of adherent invasive Escherichia coli strain LF82 isolated from a patient with Crohn's disease."
    Peyretaillade E., Claret L., Bonnet R., Dossat C., Barbe V., Vacherie B., Segurens B., Peyret P., Darfeuille-Michaud A.
    Submitted (JAN-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: LF82Imported.
  4. "Complete genome sequence of adherent invasive Escherichia coli strain LF82 isolated from a patient with Crohn's disease."
    Peyretaillade E., Claret L., Bonnet R., Dossat C., Barbe V., Vacherie B., Segurens B., Peyret P., Darfeuille-Michaud A.
    Submitted (NOV-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: LF82 / AIECImported.
  5. Genoscope - CEA
    Submitted (NOV-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: LF82Imported.
  6. "Identification of avian pathogenic Escherichia coli serogroup O78 genes associated with pathogenesis in poultry."
    Dziva F., Hauser H., Connor T., Van Diemen P.M., Prescott G., Langridge G.C., Eckert S., Chaudhuri R.R., Ewers C., Mellata M., Curtiss III R., Dougan G., Wieler L., Thomson N.R., Pickard D.J., Stevens M.P.
    Submitted (JUL-2012) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  7. Aslett M.
    Submitted (JUL-2012) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: IMT2125Imported.
  8. "Sequencing and functional annotation of avian pathogenic Escherichia coli serogroup O78 strains reveal the evolution of E. coli lineages pathogenic for poultry via distinct mechanisms."
    Dziva F., Hauser H., Connor T.R., van Diemen P.M., Prescott G., Langridge G.C., Eckert S., Chaudhuri R.R., Ewers C., Mellata M., Mukhopadhyay S., Curtiss R., Dougan G., Wieler L.H., Thomson N.R., Pickard D.J., Stevens M.P.
    Infect. Immun. 81:838-849(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: IMT2125Imported.
  9. "Complete Genome Sequences of Nitrofurantoin-Sensitive and -Resistant Escherichia coli ST540 and ST2747 Strains."
    Xavier B.B., Vervoort J., Stewardson A., Adriaenssens N., Coenen S., Harbarth S., Goossens H., Malhotra-Kumar S.
    Genome Announc. 2:e00239-14(2014) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: ST2747Imported and ST540Imported.
  10. "Structural basis for -10 promoter element melting by environmentally induced sigma factors."
    Campagne S., Marsh M.E., Capitani G., Vorholt J.A., Allain F.H.
    Nat. Struct. Mol. Biol. 21:269-276(2014) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (1.20 ANGSTROMS) OF 3-92.
  11. "Single-molecule sequencing to track plasmid diversity of hospital-associated carbapenemase-producing Enterobacteriaceae."
    NISC Comparative Sequencing Program
    Conlan S., Thomas P.J., Deming C., Park M., Lau A.F., Dekker J.P., Snitkin E.S., Clark T.A., Luong K., Song Y., Tsai Y.C., Boitano M., Dayal J., Brooks S.Y., Schmidt B., Young A.C., Thomas J.W., Bouffard G.G.
    , Blakesley R.W., Mullikin J.C., Korlach J., Henderson D.K., Frank K.M., Palmore T.N., Segre J.A.
    Sci. Transl. Med. 6:254RA126-254RA126(2014) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: ECONIH1Imported.
  12. "Draft Genome Sequence of Escherichia coli str UCD_JA03."
    Coil D., Jospin G., Adams J., Eisen J.
    Submitted (FEB-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: UCD_JA03Imported.
  13. "Draft Genome Sequence of Escherichia coli str UCD_JA17."
    Coil D., Jospin G., Adams J., Eisen J.
    Submitted (FEB-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: UCD_JA17Imported.
  14. "Draft Genome Sequence of Escherichia coli str UCD_JA23."
    Coil D., Jospin G., Adams J., Eisen J.
    Submitted (FEB-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: UCD_JA23Imported.
  15. "Draft Genome Sequence of Escherichia coli str UCD_JA62."
    Coil D., Jospin G., Adams J., Eisen J.
    Submitted (FEB-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: UCD_JA62Imported.
  16. "Draft Genome Sequence of Escherichia coli str UCD_JA65."
    Coil D., Jospin G., Adams J., Eisen J.
    Submitted (FEB-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: UCD_JA65Imported.
  17. "Draft Genome Sequence of Escherichia coli str UCD_JA69."
    Coil D., Jospin G., Adams J., Eisen J.
    Submitted (FEB-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: UCD_JA69Imported.
  18. Lai Y.H.
    Submitted (FEB-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: E455Imported and E455LImported.
  19. Britto Xavier B.
    Submitted (FEB-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: ST2747Imported and ST540Imported.
  20. "Escherichia coli non-O157 genome sequencing."
    Leonard S.R., Lacher D.W.
    Submitted (MAR-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: 97-3250Imported, MI10-01Imported and PMK-5Imported.
  21. "Genome sequence of four bovine mastitis-causing Escherichia coli strains."
    Kempf F., Loux V., Germon P.
    Submitted (MAR-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: D6-117_07.11Imported.
  22. "A draft genome of Escherichia coli 2009-46."
    Darling A.E., Roy Chowdhury P., Santos J., Worden P., Djordjevic S.P.
    Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: 2009-46Imported.
  23. "Draft Genome Sequence of blaNDM-1 positive Escherichia coli O25b-ST131 clone isolated from an environmental sample."
    Kutumbaka K., Han S., Mategko J., Nadala C., Buser G.L., Cassidy M.P., Beldavs Z.G., Weissman S.J., Morey K.E., Vega R., Samadpour M.
    Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: O25b-ST131Imported.
  24. "Escherichia coli UCD_JA03_pb."
    Coil D.A., Jospin G., Eisen J.A., Adams J.
    Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: UCD_JA03_pbImported.
  25. "Escherichia coli UCD_JA17_pb."
    Coil D.A., Jospin G., Eisen J.A., Adams J.
    Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: UCD_JA17_pbImported.
  26. "Escherichia coli UCD_JA23_pb."
    Coil D.A., Jospin G., Eisen J.A., Adams J.
    Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: UCD_JA23_pbImported.
  27. "Escherichia coli UCD_JA62_pb."
    Coil D.A., Jospin G., Eisen J.A., Adams J.
    Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: UCD_JA62_pbImported.
  28. "Escherichia coli UCD_JA65_pb."
    Coil D.A., Jospin G., Eisen J.A., Adams J.
    Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: UCD_JA65_pbImported.
  29. "Escherichia coli UCD_JA69_pb."
    Coil D.A., Jospin G., Eisen J.A., Adams J.
    Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: UCD_JA69_pbImported.
  30. "Genome Sequence of Enterotoxigenic Escherichia coli Strain W25K."
    Ren W., Liu G., Chen S., Li T., Kong X., Yin Y., Hardwidge P.R.
    Submitted (MAY-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: W25KImported.
  31. "Genome sequence of four bovine mastitis-causing Escherichia coli strains."
    Kempf F., Loux V., Germon P.
    Submitted (MAY-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: D6-117_07.11Imported.
  32. "Genome Sequence of Multi-Drug Resistant Escherichia coli ST 131 Causing Neonatal Early-Onset Sepsis."
    Chavez-Bueno S., Day M., Inimary T., Akins D., Dyer D.
    Submitted (MAY-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: SCB34Imported.
  33. Wu C.H.
    Submitted (MAY-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: H1.94Imported, H2.185Imported, P.231Imported and S.93Imported.
  34. Montero Manuel
    Submitted (MAY-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  35. "Draft Genome Sequences of 6 Multi-Drug Resistant Human Commensal Escherichia coli Isolates."
    Garrett M.E., Parker J., Stephens C.
    Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: CS01Imported, CS02Imported, CS03Imported, CS04Imported, CS05Imported and CS06Imported.
  36. "Complete sequence of probiotic Symbioflor2 E. coli G3/10 and draft sequences of Symbioflor2 strains G1/2, G4/9, G5, G6/7 and G8."
    Zschuettig A., Auerbach C., Meltke S., Eichhorn C., Brandt M., Blom J., Goesmann A., Jarek M., Scharfe M., Zimmermann K., Wassenaar T.M., Gunzer F.
    Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: G8Imported.
  37. "Complete sequence of probiotic Symbioflor2 E. coli strain G3/10 and draft sequences of Symbioflor2 strains G1/2, G4/9, G5, G6/7 and G8."
    Zschuettig A., Auerbach C., Meltke S., Eichhorn C., Brandt M., Blom J., Goesmann A., Jarek M., Scharfe M., Zimmermann K., Wassenaar T.M., Gunzer F.
    Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: G1/2Imported, G4/9Imported, G5Imported and G6/7Imported.
  38. "Escherichia coli E455."
    Lai J.Y.H., Zhang H., Chiang M.H.Y., Yu M., Zhang R., Lau S.C.K.
    Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: E455Imported.
  39. "Escherichia coli E455L."
    Lai J.Y.H., Zhang H., Chiang M.H.Y., Yu M., Zhang R., Lau S.C.K.
    Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: E455LImported.
  40. "Prevalence of subtilase cytotoxin-encoding subAB variants among Shiga toxin-producing Escherichia coli strains isolated from wild ruminants and sheep differs from that of cattle and pigs and is predominated by the new allelic variant subAB2-2."
    Nuesch-Inderbinen M.T., Funk J., Cernela N., Tasara T., Klumpp J., Schmidt H., Stephan R.
    Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: 48Imported.
  41. Pattabiraman V., Bopp C.
    Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: 2013EL-1319Imported.
  42. Krempl M.Peter.
    Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: K-12 substr. HMS174Imported and K-12 substr. RV308Imported.
  43. Pattabiraman V., Bopp C.
    Submitted (AUG-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: 2011EL-1640-5Imported.
  44. Pattabiraman V., Bopp C.A.
    Submitted (AUG-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: 2011EL-1251-4Imported, 2011EL-1369-1Imported, 2011EL-1370-2Imported, 2011EL-1497-2Imported, 2013EL-1320-c5Imported, F5995Imported, F6097Imported and M9803Imported.
  45. "Complete (Draft) Genome Sequence of Escherichia coli strain VKPM B-10182 overproducing penicillin G acylase."
    Mardanov A., Eldarov M., Sklyarenko A., Dumina M., Beletsky A., Yarotsky S., Ravin N.
    Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: VKPM B-10182Imported.
  46. "Genome evolution and analysis for heat tolerance of Escherichia coli carrying a strong mutator dnaQ-BR1."
    Luan G., Bao G., Li Y., Lin Z., Chen Z., Cai Z., Li Y.
    Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: DH5aImported.
  47. "Genome sequences of Four Escherichia coli O91:H21 Isolates."
    Zhang P., Morales C.Q., Kiang D.
    Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: H1.94Imported, H2.185Imported, P.231Imported and S.93Imported.
  48. "War Wound Treatment Complications due to in vivo Transfer of an IncN Plasmid Harboring blaOXA-181 from Morganella morgannii to CTX-M-27-producing Escherichia coli."
    McGann P., Snesrud E., Ong A.C., Appalla L., Koren M., Kwak Y.I., Waterman P.E., Lesho E.
    Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: MRSN17749Imported and MRSN22624Imported.
  49. "Plasmid movement, recombination, and chromosomal integration amongst multidrug resistant commensal Escherichia coli clones within a single commercial turkey flock."
    Lang K., Dorn K., Danzeisen J., Johnson T.J.
    Submitted (OCT-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: UMNturkey3Imported, UMNturkey4Imported, UMNturkey5Imported and UMNturkey6Imported.

Entry informationi

Entry nameiQ0P6M2_ECOLX
AccessioniPrimary (citable) accession number: Q0P6M2
Entry historyi
Integrated into UniProtKB/TrEMBL: September 19, 2006
Last sequence update: September 19, 2006
Last modified: February 4, 2015
This is version 62 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.