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Q0P6M2 (Q0P6M2_ECOLX) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 56. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
RNA polymerase sigma factor RuleBase RU000716
Gene names
Name:rpoE EMBL AAZ80065.1
ORF Names:BC97_10805 EMBL KAJ40966.1, BC99_05540 EMBL KAJ43180.1, BN17_18601 EMBL CCJ45076.1, BU34_22545 EMBL AHM31215.1, CF57_07525 EMBL AHM33558.1, CF58_21975 EMBL AHM44815.1, CF59_21950 EMBL AHM49423.1, CF60_21615 EMBL AHM53873.1, CF61_08210 EMBL AHM38155.1, ECs3439 EMBL ACI79721.1, LF82_1962 EMBL CAP77019.1, PGD_00662 EMBL CDP70404.1
OrganismEscherichia coli [Complete proteome] [HAMAP] EMBL AAZ80065.1
Taxonomic identifier562 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia

Protein attributes

Sequence length191 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Sequence similarities

Belongs to the sigma-70 factor family. ECF subfamily. RuleBase RU000716

Sequences

Sequence LengthMass (Da)Tools
Q0P6M2 [UniParc].

Last modified September 19, 2006. Version 1.
Checksum: C71EEF5939C3611E

FASTA19121,696
        10         20         30         40         50         60 
MSEQLTDQVL VERVQKGDQK AFNLLVVRYQ HKVASLVSRY VPSGDVPDVV QEAFIKAYRA 

        70         80         90        100        110        120 
LDSFRGDSAF YTWLYRIAVN TAKNYLVAQG RRPPSSDVDA IEAENFESGG ALKEISNPEN 

       130        140        150        160        170        180 
LMLSEELRQI VFRTIESLPE DLRMAITLRE LDGLSYEEIA AIMDCPVGTV RSRIFRAREA 

       190 
IDNKVQPLIR R 

« Hide

References

« Hide 'large scale' references
[1]"Complex mutation pattern in the design of a protoplast type L-form Escherichia coli."
Siddiqui R.A., Heinze I., Platzer M.
Submitted (APR-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: LW1655F+ EMBL AAZ80065.1.
[2]"A precise reconstruction of the emergence and constrained radiations of Escherichia coli O157 portrayed by backbone concatenomic analysis."
Leopold S.R., Magrini V., Holt N.J., Shaikh N., Mardis E.R., Cagno J., Ogura Y., Iguchi A., Hayashi T., Mellmann A., Karch H., Besser T.E., Sawyer S.A., Whittam T.S., Tarr P.I.
Proc. Natl. Acad. Sci. U.S.A. 106:8713-8718(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: 493/89 EMBL ACI79721.1, 86-24 EMBL ACI79722.1, 87-14 EMBL ACI79723.1, TB182A EMBL ACI79724.1 and TW14359 EMBL ACI79725.1.
[3]"Complete genome sequence of adherent invasive Escherichia coli strain LF82 isolated from a patient with Crohn's disease."
Peyretaillade E., Claret L., Bonnet R., Dossat C., Barbe V., Vacherie B., Segurens B., Peyret P., Darfeuille-Michaud A.
Submitted (JAN-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: LF82 EMBL CAP77019.1.
[4]"Complete genome sequence of adherent invasive Escherichia coli strain LF82 isolated from a patient with Crohn's disease."
Peyretaillade E., Claret L., Bonnet R., Dossat C., Barbe V., Vacherie B., Segurens B., Peyret P., Darfeuille-Michaud A.
Submitted (NOV-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: LF82 / AIEC.
[5]Genoscope - CEA
Submitted (NOV-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: LF82 EMBL CAP77019.1.
[6]"Identification of avian pathogenic Escherichia coli serogroup O78 genes associated with pathogenesis in poultry."
Dziva F., Hauser H., Connor T., Van Diemen P.M., Prescott G., Langridge G.C., Eckert S., Chaudhuri R.R., Ewers C., Mellata M., Curtiss III R., Dougan G., Wieler L., Thomson N.R., Pickard D.J., Stevens M.P.
Submitted (JUL-2012) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[7]Aslett M.
Submitted (JUL-2012) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: IMT2125 EMBL CCJ45076.1.
[8]"Sequencing and functional annotation of avian pathogenic Escherichia coli serogroup O78 strains reveal the evolution of E. coli lineages pathogenic for poultry via distinct mechanisms."
Dziva F., Hauser H., Connor T.R., van Diemen P.M., Prescott G., Langridge G.C., Eckert S., Chaudhuri R.R., Ewers C., Mellata M., Mukhopadhyay S., Curtiss R., Dougan G., Wieler L.H., Thomson N.R., Pickard D.J., Stevens M.P.
Infect. Immun. 81:838-849(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: IMT2125 EMBL CCJ45076.1.
[9]"Complete Genome Sequences of Nitrofurantoin-Sensitive and -Resistant Escherichia coli ST540 and ST2747 Strains."
Xavier B.B., Vervoort J., Stewardson A., Adriaenssens N., Coenen S., Harbarth S., Goossens H., Malhotra-Kumar S.
Genome Announc. 2:e00239-14(2014) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: ST2747 EMBL AHM44815.1 and ST540 EMBL AHM31215.1.
[10]"Structural basis for -10 promoter element melting by environmentally induced sigma factors."
Campagne S., Marsh M.E., Capitani G., Vorholt J.A., Allain F.H.
Nat. Struct. Mol. Biol. 21:269-276(2014) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (1.20 ANGSTROMS) OF 3-92.
[11]Britto Xavier B.
Submitted (FEB-2014) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: ST2747 EMBL AHM44815.1 and ST540 EMBL AHM31215.1.
[12]Lai Y.H.
Submitted (FEB-2014) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: 455 EMBL KAJ40966.1 and 455L EMBL KAJ43180.1.
[13]"Genome sequence of four bovine mastitis-causing Escherichia coli strains."
Kempf F., Loux V., Germon P.
Submitted (MAR-2014) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: D6-117_07.11 EMBL CDP70404.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AY616598 Genomic DNA. Translation: AAZ80065.1.
EU897165 Genomic DNA. Translation: ACI79721.1.
EU897166 Genomic DNA. Translation: ACI79722.1.
EU897167 Genomic DNA. Translation: ACI79723.1.
EU897168 Genomic DNA. Translation: ACI79724.1.
EU897169 Genomic DNA. Translation: ACI79725.1.
CP007265 Genomic DNA. Translation: AHM31215.1.
CP007390 Genomic DNA. Translation: AHM33558.1.
CP007391 Genomic DNA. Translation: AHM38155.1.
CP007392 Genomic DNA. Translation: AHM44815.1.
CP007393 Genomic DNA. Translation: AHM49423.1.
CP007394 Genomic DNA. Translation: AHM53873.1.
CU651637 Genomic DNA. Translation: CAP77019.1.
HE964769 Genomic DNA. Translation: CCJ45076.1.
CCCP010000007 Genomic DNA. Translation: CDP70404.1.
JEND01000039 Genomic DNA. Translation: KAJ40966.1.
JENE01000022 Genomic DNA. Translation: KAJ43180.1.
RefSeqYP_002557412.1. NC_011993.1.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
4LUPX-ray1.20A/C3-92[»]
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAP77019; CAP77019; LF82_1962.
GeneID7394209.
KEGGelf:LF82_1962.
PATRIC48655060. VBIEscCol74806_2570.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000094755.
KOK03088.
OMAIDNKIQP.

Family and domain databases

Gene3D1.10.10.10. 1 hit.
InterProIPR014284. RNA_pol_sigma-70_dom.
IPR000838. RNA_pol_sigma70_ECF_CS.
IPR007627. RNA_pol_sigma70_r2.
IPR013249. RNA_pol_sigma70_r4_t2.
IPR014286. RNA_pol_sigma70_RpoE.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamPF04542. Sigma70_r2. 1 hit.
PF08281. Sigma70_r4_2. 1 hit.
[Graphical view]
SUPFAMSSF88659. SSF88659. 1 hit.
SSF88946. SSF88946. 1 hit.
TIGRFAMsTIGR02939. RpoE_Sigma70. 1 hit.
TIGR02937. sigma70-ECF. 1 hit.
PROSITEPS01063. SIGMA70_ECF. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ0P6M2_ECOLX
AccessionPrimary (citable) accession number: Q0P6M2
Entry history
Integrated into UniProtKB/TrEMBL: September 19, 2006
Last sequence update: September 19, 2006
Last modified: July 9, 2014
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)