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Protein

RNA polymerase sigma factor

Gene

rpoE

Organism
Escherichia coli
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Sigma factorUniRule annotationSAAS annotation

Keywords - Biological processi

Stress responseImported, Transcription, Transcription regulation

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Recommended name:
RNA polymerase sigma factorUniRule annotation
Gene namesi
Name:rpoEImported
ORF Names:AC789_1c29100Imported, BN1008_4328Imported, BN17_18601Imported, CS35_2629Imported, DP32_15140Imported, ECONIH1_14995Imported, ECs3439Imported, EL75_1074Imported, EL79_1085Imported, EL80_1087Imported, ERS451419_00023Imported, HUS2011_3099Imported, HW43_17270Imported, IY32_09680Imported, JD73_17235Imported, PD07_25345Imported, PGD_00662Imported, PU06_05530Imported, PU15_00545Imported, PU21_16955Imported, PU33_05105Imported, PU38_07870Imported, PU53_06735Imported, PU69_17775Imported, PU71_24440Imported, PU73_21575Imported, RR31_13730Imported, SG46_2629Imported, SG47_2629Imported, SG48_2635Imported, SY51_14730Imported, UC21_14160Imported, UC41_13475Imported, UN86_04925Imported, UN87_26235Imported, UN88_17970Imported, UN89_15690Imported, UN90_01355Imported, UN91_26310Imported, UN92_00960Imported, VM92_18035Imported, VP68_02685Imported, VP69_07300Imported
OrganismiEscherichia coliImported
Taxonomic identifieri562 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
ProteomesiUP000033371 Componenti: Unassembled WGS sequence UP000030317 Componenti: Chromosome UP000032738 Componenti: Chromosome UP000031522 Componenti: Chromosome UP000030783 Componenti: Chromosome UP000032290 Componenti: Chromosome UP000031132 Componenti: Chromosome UP000033592 Componenti: Unassembled WGS sequence UP000033516 Componenti: Unassembled WGS sequence UP000034365 Componenti: Chromosome UP000034834 Componenti: Chromosome UP000034210 Componenti: Chromosome UP000034861 Componenti: Chromosome UP000033728 Componenti: Unassembled WGS sequence UP000034615 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi469008.ECD_02467.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4LUPX-ray1.20A/C3-92[»]
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the sigma-70 factor family. ECF subfamily.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000094755.
OMAiKYQHKVA.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR000838. RNA_pol_sigma70_ECF_CS.
IPR007627. RNA_pol_sigma70_r2.
IPR013249. RNA_pol_sigma70_r4_t2.
IPR014286. RNA_pol_sigma70_RpoE.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF04542. Sigma70_r2. 1 hit.
PF08281. Sigma70_r4_2. 1 hit.
[Graphical view]
SUPFAMiSSF88659. SSF88659. 1 hit.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02939. RpoE_Sigma70. 1 hit.
TIGR02937. sigma70-ECF. 1 hit.
PROSITEiPS01063. SIGMA70_ECF. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q0P6M2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSEQLTDQVL VERVQKGDQK AFNLLVVRYQ HKVASLVSRY VPSGDVPDVV
60 70 80 90 100
QEAFIKAYRA LDSFRGDSAF YTWLYRIAVN TAKNYLVAQG RRPPSSDVDA
110 120 130 140 150
IEAENFESGG ALKEISNPEN LMLSEELRQI VFRTIESLPE DLRMAITLRE
160 170 180 190
LDGLSYEEIA AIMDCPVGTV RSRIFRAREA IDNKVQPLIR R
Length:191
Mass (Da):21,696
Last modified:September 19, 2006 - v1
Checksum:iC71EEF5939C3611E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY616598 Genomic DNA. Translation: AAZ80065.1.
EU897165 Genomic DNA. Translation: ACI79721.1.
EU897166 Genomic DNA. Translation: ACI79722.1.
EU897167 Genomic DNA. Translation: ACI79723.1.
EU897168 Genomic DNA. Translation: ACI79724.1.
EU897169 Genomic DNA. Translation: ACI79725.1.
CP009859 Genomic DNA. Translation: AIX64462.1.
CP009106 Genomic DNA. Translation: AIZ88154.1.
CP010371 Genomic DNA. Translation: AJB52685.1.
CP010315 Genomic DNA. Translation: AJE57134.1.
CP010876 Genomic DNA. Translation: AJO84602.1.
CP007594 Genomic DNA. Translation: AKF21719.1.
CP011320 Genomic DNA. Translation: AKF56406.1.
CP011322 Genomic DNA. Translation: AKF64684.1.
CP011323 Genomic DNA. Translation: AKF68824.1.
CP011324 Genomic DNA. Translation: AKF72963.1.
HE964769 Genomic DNA. Translation: CCJ45076.1.
HF572917 Genomic DNA. Translation: CCQ29977.2.
CCCP010000007 Genomic DNA. Translation: CDP70404.1.
HG976952 Genomic DNA. Translation: CDU37595.1.
CCNI01000329 Genomic DNA. Translation: CEE10906.1.
LN831040 Genomic DNA. Translation: CKG80751.1.
JPQG01000003 Genomic DNA. Translation: KFD75417.1.
JPKH01000009 Genomic DNA. Translation: KGM70933.1.
JPKL01000018 Genomic DNA. Translation: KGM83109.1.
JPMZ01000007 Genomic DNA. Translation: KGM84502.1.
JUBT01000069 Genomic DNA. Translation: KHG91489.1.
JUBV01000146 Genomic DNA. Translation: KHG95308.1.
JUBW01000040 Genomic DNA. Translation: KHH07640.1.
JUCW01000017 Genomic DNA. Translation: KHI36316.1.
JUDH01000001 Genomic DNA. Translation: KHJ00055.1.
JUDN01000027 Genomic DNA. Translation: KHJ21501.1.
JWZA01000010 Genomic DNA. Translation: KIG54660.1.
JWZF01000032 Genomic DNA. Translation: KIG81739.1.
JWZL01000025 Genomic DNA. Translation: KIH02970.1.
JWZR01000174 Genomic DNA. Translation: KIH33398.1.
JPPP01000011 Genomic DNA. Translation: KIQ46719.1.
JYEF01000051 Genomic DNA. Translation: KJH07250.1.
JZSD01000148 Genomic DNA. Translation: KJJ45576.1.
JZDV01000182 Genomic DNA. Translation: KJW22606.1.
JZDW01000044 Genomic DNA. Translation: KJW25452.1.
JZDU01000048 Genomic DNA. Translation: KJW36086.1.
JZDX01000092 Genomic DNA. Translation: KJW40237.1.
JZDZ01000126 Genomic DNA. Translation: KJW44396.1.
JZDY01000033 Genomic DNA. Translation: KJW54405.1.
JZEA01000065 Genomic DNA. Translation: KJW66278.1.
JYKT01000071 Genomic DNA. Translation: KJY11195.1.
LARS01000120 Genomic DNA. Translation: KKB19229.1.
LARR01000044 Genomic DNA. Translation: KKB23715.1.
RefSeqiWP_001295364.1. NZ_LM997395.1.

Genome annotation databases

EnsemblBacteriaiAHM31215; AHM31215; BU34_22545.
AHM33558; AHM33558; CF57_07525.
AHM38155; AHM38155; CF61_08210.
AHM44815; AHM44815; CF58_21975.
AHM49423; AHM49423; CF59_21950.
AHM53873; AHM53873; CF60_21615.
AIX64462; AIX64462; ECONIH1_14995.
AIZ83649; AIZ83649; HW42_17610.
AIZ88154; AIZ88154; HW43_17270.
AJB52685; AJB52685; RR31_13730.
CAP77019; CAP77019; LF82_1962.
CDU37595; CDU37595; PGD_00662.
CEE10906; CEE10906; BN1008_4328.
EYB38972; EYB38972; BU70_20950.
EYB46073; EYB46073; BU69_10490.
EYB55195; EYB55195; BU65_01430.
EYB55225; EYB55225; BU68_01125.
EYB58419; EYB58419; BU66_01490.
EYB59905; EYB59905; BU67_03840.
KCW96830; KCW96830; DP79_24870.
KDM72317; KDM72317; DA88_11690.
KDM79683; KDM79683; DC24_14495.
KDM85972; KDM85972; DC22_19415.
KDN07943; KDN07943; DH22_1167.
KDO89837; KDO89837; DO98_12640.
KDP16542; KDP16542; EP08_03925.
KEO97555; KEO97555; EH66_05500.
KEO99995; KEO99995; EH65_12725.
KEP06404; KEP06404; EH64_22950.
KEP09680; KEP09680; EH62_07935.
KEP17933; KEP17933; EH63_21810.
KEP20641; KEP20641; EH61_21265.
KFD75417; KFD75417; JD73_17235.
KFF37315; KFF37315; BC97_0216040.
KFF52761; KFF52761; BC99_0300545.
KFH75009; KFH75009; GR04_23160.
KFH85430; KFH85430; GR03_08395.
KFH86209; KFH86209; GR05_01900.
KFH93047; KFH93047; GR06_00090.
KFH97069; KFH97069; GR07_02125.
KFI00435; KFI00435; GR02_04460.
KFV25156; KFV25156; GS40_18725.
KFV26362; KFV26362; GS37_14585.
KFV33042; KFV33042; GS38_22950.
KFV38187; KFV38187; GS39_23570.
KGA88153; KGA88153; KV39_04790.
KGI49062; KGI49062; LJ08_2396.
KGM65911; KGM65911; EL77_1110.
KGM70933; KGM70933; EL75_1074.
KGM74936; KGM74936; EL78_1101.
KGM83109; KGM83109; EL80_1087.
KGM84502; KGM84502; EL79_1085.
KGP11676; KGP11676; JQ58_15700.
KGP13734; KGP13734; JQ57_05320.
KGP21251; KGP21251; JQ56_00195.
KGP39491; KGP39491; JQ59_11030.
KGP52952; KGP52952; LS89_02835.
KGP55392; KGP55392; LS90_02815.
KGT06855; KGT06855; GY32_07400.
KGT12643; KGT12643; JO89_15200.
KGT21295; KGT21295; JO87_06310.
KGT22379; KGT22379; JO90_08345.
KGT28412; KGT28412; JO88_03700.
KGT32482; KGT32482; JO86_03950.
KHD43325; KHD43325; LS39_03900.
KHD50251; KHD50251; LS41_12890.
KHD55788; KHD55788; LS40_03000.
KHD58619; KHD58619; LS42_07290.
KHG73066; KHG73066; PU77_15730.
KHG82571; KHG82571; PU76_07405.
KHG82945; KHG82945; PU75_09670.
KHG87847; KHG87847; PU74_12915.
KHG91489; KHG91489; PU73_21575.
KHG95308; KHG95308; PU71_24440.
KHH01957; KHH01957; PU72_00095.
KHH07640; KHH07640; PU69_17775.
KHH08180; KHH08180; PU68_23115.
KHH22714; KHH22714; PU67_05100.
KHH30199; KHH30199; PU62_09120.
KHH34818; KHH34818; PU61_07605.
KHH39938; KHH39938; PU60_05115.
KHH43161; KHH43161; PU59_11720.
KHH49389; KHH49389; PU58_01445.
KHH52424; KHH52424; PU57_16465.
KHH56175; KHH56175; PU56_02795.
KHH60105; KHH60105; PU55_17000.
KHH66523; KHH66523; PU54_11305.
KHH67620; KHH67620; PU52_18175.
KHH84987; KHH84987; PU50_00955.
KHH86416; KHH86416; PU49_04170.
KHH86712; KHH86712; PU51_01940.
KHH90717; KHH90717; PU47_12295.
KHH97646; KHH97646; PU46_02070.
KHI06254; KHI06254; PU44_00095.
KHI07057; KHI07057; PU48_01695.
KHI11209; KHI11209; PU43_04990.
KHI12515; KHI12515; PU36_20800.
KHI21317; KHI21317; PU40_01520.
KHI22634; KHI22634; PU35_15560.
KHI32162; KHI32162; PU34_08175.
KHI36316; KHI36316; PU33_05105.
KHI40262; KHI40262; PU32_03050.
KHI47747; KHI47747; PU31_01295.
KHI48142; KHI48142; PU27_09420.
KHI51680; KHI51680; PU26_21535.
KHI52313; KHI52313; PU24_17915.
KHI62860; KHI62860; PU22_07075.
KHI69095; KHI69095; PU20_07985.
KHI71388; KHI71388; PU19_16455.
KHI80258; KHI80258; PU16_02765.
KHI81114; KHI81114; PU18_16290.
KHI90025; KHI90025; PU14_05295.
KHI98062; KHI98062; PU12_11560.
KHJ00055; KHJ00055; PU15_00545.
KHJ01112; KHJ01112; PU11_10955.
KHJ09748; KHJ09748; PU08_00755.
KHJ14112; KHJ14112; PU10_07005.
KHJ21501; KHJ21501; PU06_05530.
KHJ27217; KHJ27217; PU03_05880.
KHO58100; KHO58100; RT53_12740.
PATRICi48655060. VBIEscCol74806_2570.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY616598 Genomic DNA. Translation: AAZ80065.1.
EU897165 Genomic DNA. Translation: ACI79721.1.
EU897166 Genomic DNA. Translation: ACI79722.1.
EU897167 Genomic DNA. Translation: ACI79723.1.
EU897168 Genomic DNA. Translation: ACI79724.1.
EU897169 Genomic DNA. Translation: ACI79725.1.
CP009859 Genomic DNA. Translation: AIX64462.1.
CP009106 Genomic DNA. Translation: AIZ88154.1.
CP010371 Genomic DNA. Translation: AJB52685.1.
CP010315 Genomic DNA. Translation: AJE57134.1.
CP010876 Genomic DNA. Translation: AJO84602.1.
CP007594 Genomic DNA. Translation: AKF21719.1.
CP011320 Genomic DNA. Translation: AKF56406.1.
CP011322 Genomic DNA. Translation: AKF64684.1.
CP011323 Genomic DNA. Translation: AKF68824.1.
CP011324 Genomic DNA. Translation: AKF72963.1.
HE964769 Genomic DNA. Translation: CCJ45076.1.
HF572917 Genomic DNA. Translation: CCQ29977.2.
CCCP010000007 Genomic DNA. Translation: CDP70404.1.
HG976952 Genomic DNA. Translation: CDU37595.1.
CCNI01000329 Genomic DNA. Translation: CEE10906.1.
LN831040 Genomic DNA. Translation: CKG80751.1.
JPQG01000003 Genomic DNA. Translation: KFD75417.1.
JPKH01000009 Genomic DNA. Translation: KGM70933.1.
JPKL01000018 Genomic DNA. Translation: KGM83109.1.
JPMZ01000007 Genomic DNA. Translation: KGM84502.1.
JUBT01000069 Genomic DNA. Translation: KHG91489.1.
JUBV01000146 Genomic DNA. Translation: KHG95308.1.
JUBW01000040 Genomic DNA. Translation: KHH07640.1.
JUCW01000017 Genomic DNA. Translation: KHI36316.1.
JUDH01000001 Genomic DNA. Translation: KHJ00055.1.
JUDN01000027 Genomic DNA. Translation: KHJ21501.1.
JWZA01000010 Genomic DNA. Translation: KIG54660.1.
JWZF01000032 Genomic DNA. Translation: KIG81739.1.
JWZL01000025 Genomic DNA. Translation: KIH02970.1.
JWZR01000174 Genomic DNA. Translation: KIH33398.1.
JPPP01000011 Genomic DNA. Translation: KIQ46719.1.
JYEF01000051 Genomic DNA. Translation: KJH07250.1.
JZSD01000148 Genomic DNA. Translation: KJJ45576.1.
JZDV01000182 Genomic DNA. Translation: KJW22606.1.
JZDW01000044 Genomic DNA. Translation: KJW25452.1.
JZDU01000048 Genomic DNA. Translation: KJW36086.1.
JZDX01000092 Genomic DNA. Translation: KJW40237.1.
JZDZ01000126 Genomic DNA. Translation: KJW44396.1.
JZDY01000033 Genomic DNA. Translation: KJW54405.1.
JZEA01000065 Genomic DNA. Translation: KJW66278.1.
JYKT01000071 Genomic DNA. Translation: KJY11195.1.
LARS01000120 Genomic DNA. Translation: KKB19229.1.
LARR01000044 Genomic DNA. Translation: KKB23715.1.
RefSeqiWP_001295364.1. NZ_LM997395.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4LUPX-ray1.20A/C3-92[»]
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi469008.ECD_02467.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAHM31215; AHM31215; BU34_22545.
AHM33558; AHM33558; CF57_07525.
AHM38155; AHM38155; CF61_08210.
AHM44815; AHM44815; CF58_21975.
AHM49423; AHM49423; CF59_21950.
AHM53873; AHM53873; CF60_21615.
AIX64462; AIX64462; ECONIH1_14995.
AIZ83649; AIZ83649; HW42_17610.
AIZ88154; AIZ88154; HW43_17270.
AJB52685; AJB52685; RR31_13730.
CAP77019; CAP77019; LF82_1962.
CDU37595; CDU37595; PGD_00662.
CEE10906; CEE10906; BN1008_4328.
EYB38972; EYB38972; BU70_20950.
EYB46073; EYB46073; BU69_10490.
EYB55195; EYB55195; BU65_01430.
EYB55225; EYB55225; BU68_01125.
EYB58419; EYB58419; BU66_01490.
EYB59905; EYB59905; BU67_03840.
KCW96830; KCW96830; DP79_24870.
KDM72317; KDM72317; DA88_11690.
KDM79683; KDM79683; DC24_14495.
KDM85972; KDM85972; DC22_19415.
KDN07943; KDN07943; DH22_1167.
KDO89837; KDO89837; DO98_12640.
KDP16542; KDP16542; EP08_03925.
KEO97555; KEO97555; EH66_05500.
KEO99995; KEO99995; EH65_12725.
KEP06404; KEP06404; EH64_22950.
KEP09680; KEP09680; EH62_07935.
KEP17933; KEP17933; EH63_21810.
KEP20641; KEP20641; EH61_21265.
KFD75417; KFD75417; JD73_17235.
KFF37315; KFF37315; BC97_0216040.
KFF52761; KFF52761; BC99_0300545.
KFH75009; KFH75009; GR04_23160.
KFH85430; KFH85430; GR03_08395.
KFH86209; KFH86209; GR05_01900.
KFH93047; KFH93047; GR06_00090.
KFH97069; KFH97069; GR07_02125.
KFI00435; KFI00435; GR02_04460.
KFV25156; KFV25156; GS40_18725.
KFV26362; KFV26362; GS37_14585.
KFV33042; KFV33042; GS38_22950.
KFV38187; KFV38187; GS39_23570.
KGA88153; KGA88153; KV39_04790.
KGI49062; KGI49062; LJ08_2396.
KGM65911; KGM65911; EL77_1110.
KGM70933; KGM70933; EL75_1074.
KGM74936; KGM74936; EL78_1101.
KGM83109; KGM83109; EL80_1087.
KGM84502; KGM84502; EL79_1085.
KGP11676; KGP11676; JQ58_15700.
KGP13734; KGP13734; JQ57_05320.
KGP21251; KGP21251; JQ56_00195.
KGP39491; KGP39491; JQ59_11030.
KGP52952; KGP52952; LS89_02835.
KGP55392; KGP55392; LS90_02815.
KGT06855; KGT06855; GY32_07400.
KGT12643; KGT12643; JO89_15200.
KGT21295; KGT21295; JO87_06310.
KGT22379; KGT22379; JO90_08345.
KGT28412; KGT28412; JO88_03700.
KGT32482; KGT32482; JO86_03950.
KHD43325; KHD43325; LS39_03900.
KHD50251; KHD50251; LS41_12890.
KHD55788; KHD55788; LS40_03000.
KHD58619; KHD58619; LS42_07290.
KHG73066; KHG73066; PU77_15730.
KHG82571; KHG82571; PU76_07405.
KHG82945; KHG82945; PU75_09670.
KHG87847; KHG87847; PU74_12915.
KHG91489; KHG91489; PU73_21575.
KHG95308; KHG95308; PU71_24440.
KHH01957; KHH01957; PU72_00095.
KHH07640; KHH07640; PU69_17775.
KHH08180; KHH08180; PU68_23115.
KHH22714; KHH22714; PU67_05100.
KHH30199; KHH30199; PU62_09120.
KHH34818; KHH34818; PU61_07605.
KHH39938; KHH39938; PU60_05115.
KHH43161; KHH43161; PU59_11720.
KHH49389; KHH49389; PU58_01445.
KHH52424; KHH52424; PU57_16465.
KHH56175; KHH56175; PU56_02795.
KHH60105; KHH60105; PU55_17000.
KHH66523; KHH66523; PU54_11305.
KHH67620; KHH67620; PU52_18175.
KHH84987; KHH84987; PU50_00955.
KHH86416; KHH86416; PU49_04170.
KHH86712; KHH86712; PU51_01940.
KHH90717; KHH90717; PU47_12295.
KHH97646; KHH97646; PU46_02070.
KHI06254; KHI06254; PU44_00095.
KHI07057; KHI07057; PU48_01695.
KHI11209; KHI11209; PU43_04990.
KHI12515; KHI12515; PU36_20800.
KHI21317; KHI21317; PU40_01520.
KHI22634; KHI22634; PU35_15560.
KHI32162; KHI32162; PU34_08175.
KHI36316; KHI36316; PU33_05105.
KHI40262; KHI40262; PU32_03050.
KHI47747; KHI47747; PU31_01295.
KHI48142; KHI48142; PU27_09420.
KHI51680; KHI51680; PU26_21535.
KHI52313; KHI52313; PU24_17915.
KHI62860; KHI62860; PU22_07075.
KHI69095; KHI69095; PU20_07985.
KHI71388; KHI71388; PU19_16455.
KHI80258; KHI80258; PU16_02765.
KHI81114; KHI81114; PU18_16290.
KHI90025; KHI90025; PU14_05295.
KHI98062; KHI98062; PU12_11560.
KHJ00055; KHJ00055; PU15_00545.
KHJ01112; KHJ01112; PU11_10955.
KHJ09748; KHJ09748; PU08_00755.
KHJ14112; KHJ14112; PU10_07005.
KHJ21501; KHJ21501; PU06_05530.
KHJ27217; KHJ27217; PU03_05880.
KHO58100; KHO58100; RT53_12740.
PATRICi48655060. VBIEscCol74806_2570.

Phylogenomic databases

HOGENOMiHOG000094755.
OMAiKYQHKVA.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR000838. RNA_pol_sigma70_ECF_CS.
IPR007627. RNA_pol_sigma70_r2.
IPR013249. RNA_pol_sigma70_r4_t2.
IPR014286. RNA_pol_sigma70_RpoE.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF04542. Sigma70_r2. 1 hit.
PF08281. Sigma70_r4_2. 1 hit.
[Graphical view]
SUPFAMiSSF88659. SSF88659. 1 hit.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02939. RpoE_Sigma70. 1 hit.
TIGR02937. sigma70-ECF. 1 hit.
PROSITEiPS01063. SIGMA70_ECF. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Complex mutation pattern in the design of a protoplast type L-form Escherichia coli."
    Siddiqui R.A., Heinze I., Platzer M.
    Submitted (APR-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: LW1655F+Imported.
  2. "A precise reconstruction of the emergence and constrained radiations of Escherichia coli O157 portrayed by backbone concatenomic analysis."
    Leopold S.R., Magrini V., Holt N.J., Shaikh N., Mardis E.R., Cagno J., Ogura Y., Iguchi A., Hayashi T., Mellmann A., Karch H., Besser T.E., Sawyer S.A., Whittam T.S., Tarr P.I.
    Proc. Natl. Acad. Sci. U.S.A. 106:8713-8718(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: 493/89Imported, 86-24Imported, 87-14Imported, TB182AImported and TW14359Imported.
  3. "Identification of avian pathogenic Escherichia coli serogroup O78 genes associated with pathogenesis in poultry."
    Dziva F., Hauser H., Connor T., Van Diemen P.M., Prescott G., Langridge G.C., Eckert S., Chaudhuri R.R., Ewers C., Mellata M., Curtiss III R., Dougan G., Wieler L., Thomson N.R., Pickard D.J., Stevens M.P.
    Submitted (JUL-2012) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  4. Aslett M.
    Submitted (JUL-2012) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: IMT2125Imported.
  5. "Sequencing and functional annotation of avian pathogenic Escherichia coli serogroup O78 strains reveal the evolution of E. coli lineages pathogenic for poultry via distinct mechanisms."
    Dziva F., Hauser H., Connor T.R., van Diemen P.M., Prescott G., Langridge G.C., Eckert S., Chaudhuri R.R., Ewers C., Mellata M., Mukhopadhyay S., Curtiss R., Dougan G., Wieler L.H., Thomson N.R., Pickard D.J., Stevens M.P.
    Infect. Immun. 81:838-849(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: IMT2125Imported.
  6. "Evolution of german Escherichia coli HUSEC/EHEC epidemic isolate HUSEC2011 in relation to putative ancestor HUSEC41."
    Kuenne C., Billion A., Fritzenwanker M., Chakraborty T.
    Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: HUSEC2011Imported.
  7. "Structural basis for -10 promoter element melting by environmentally induced sigma factors."
    Campagne S., Marsh M.E., Capitani G., Vorholt J.A., Allain F.H.
    Nat. Struct. Mol. Biol. 21:269-276(2014) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (1.20 ANGSTROMS) OF 3-92.
  8. "Single-molecule sequencing to track plasmid diversity of hospital-associated carbapenemase-producing Enterobacteriaceae."
    NISC Comparative Sequencing Program
    Conlan S., Thomas P.J., Deming C., Park M., Lau A.F., Dekker J.P., Snitkin E.S., Clark T.A., Luong K., Song Y., Tsai Y.C., Boitano M., Dayal J., Brooks S.Y., Schmidt B., Young A.C., Thomas J.W., Bouffard G.G.
    , Blakesley R.W., Mullikin J.C., Korlach J., Henderson D.K., Frank K.M., Palmore T.N., Segre J.A.
    Sci. Transl. Med. 6:254RA126-254RA126(2014) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ECONIH1Imported.
  9. "Genome sequence of four bovine mastitis-causing Escherichia coli strains."
    Kempf F., Loux V., Germon P.
    Submitted (MAR-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: D6-117_07.11Imported.
  10. "Complete sequence of Escherichia Coli SEC470 isolated from a diarrhea piglet in China."
    Liu G., Ren W., Hardwidge P.R., Chen S.
    Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: SEC470Imported.
  11. "Genome sequence of four bovine mastitis-causing Escherichia coli strains."
    Kempf F., Loux V., Germon P.
    Submitted (MAY-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: D6-117_07.11Imported.
  12. Montero Manuel
    Submitted (MAY-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  13. "Comparative Genomic Analysis of an Enterotoxigenic E. coli O157 Lineage from Australian Pigs."
    Wyrsch E., Roy Chowdhury P., Abraham S., Santos J., Darling A., Charles I., Chapman T., Djordjevic S.
    Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: O157 SvETECImported.
  14. "Complete sequence of probiotic Symbioflor2 E. coli G3/10 and draft sequences of Symbioflor2 strains G1/2, G4/9, G5, G6/7 and G8."
    Zschuettig A., Auerbach C., Meltke S., Eichhorn C., Brandt M., Blom J., Goesmann A., Jarek M., Scharfe M., Zimmermann K., Wassenaar T.M., Gunzer F.
    Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: G8Imported.
  15. "Complete sequence of probiotic Symbioflor2 E. coli strain G3/10 and draft sequences of Symbioflor2 strains G1/2, G4/9, G5, G6/7 and G8."
    Zschuettig A., Auerbach C., Meltke S., Eichhorn C., Brandt M., Blom J., Goesmann A., Jarek M., Scharfe M., Zimmermann K., Wassenaar T.M., Gunzer F.
    Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: G1/2Imported and G6/7Imported.
  16. "Prevalence of subtilase cytotoxin-encoding subAB variants among Shiga toxin-producing Escherichia coli strains isolated from wild ruminants and sheep differs from that of cattle and pigs and is predominated by the new allelic variant subAB2-2."
    Nuesch-Inderbinen M.T., Funk J., Cernela N., Tasara T., Klumpp J., Schmidt H., Stephan R.
    Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: 48Imported.
  17. "Whole-genome sequencing effectively predicts antimicrobial resistance phenotypes of E. coli."
    Tyson G.H., McDermott P.F., Li C., Tadesse D.A., Mukherjee S., Bodeis-Jones S., Kabera C., Gaines S.A., Loneragan G.H., Edrington T.S., Torrence M., Harhay D.M., Zhao S.
    Submitted (NOV-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: CVM N33429PSImported, CVM N33561PSImported, CVM N33707PSImported, CVM N33825PSImported, CVM N34352PSImported, CVM N34577PSImported, CVM N36601PSImported, CVM N38795PSImported, CVM N38823PSImported and CVM N38833PSImported.
  18. McCorrison J., Sanka R., Adams M., Brinkac L., Sutton G., Bonomo R., Rojas L.
    Submitted (DEC-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: 6409Imported.
  19. "Genome sequencing and comparative genomics provides insights on the evolutionary dynamics and pathogenic potential of different H-serotypes of Shiga toxin-producing Escherichia coli O104."
    Yan X., Fratamico P.M., Bono J.L., Baranzoni G.M., Chen C.Y.
    BMC Microbiol. 15:83-83(2015) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 94-3024Imported.
  20. "Characterization of enteropathogenic and Shiga toxin-producing Escherichia coli in cattle and deer in a shared agroecosystem."
    Singh P., Sha Q., Lacher D.W., Valle J.D., Mosci R.E., Moore J.A., Scribner K.T., Manning S.D.
    Front. Cell. Infect. Microbiol. 5:29-29(2015) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: TW18703Imported and TW18710Imported.
  21. "Complete Genome Sequence of a Carbapenem-Resistant Extraintestinal Pathogenic Escherichia coli Strain Belonging to the Sequence Type 131 H30R Subclade."
    Johnson T.J., Hargreaves M., Shaw K., Snippes P., Lynfield R., Aziz M., Price L.B.
    Genome Announc. 3:0-0(2015) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: MNCRE44Imported.
  22. "Genomic Avenue to Avian Colisepticemia."
    Huja S., Oren Y., Trost E., Brzuszkiewicz E., Biran D., Blom J., Goesmann A., Gottschalk G., Hacker J., Ron E.Z., Dobrindt U.
    MBio 6:e01681-14(2015)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: 789Imported.
  23. "Genome sequence of Escherichia coli strain D2-2."
    Olsen R.H., Bisgaard M., Christensen J.P., Christensen H., Thofner I., Pors S.E.
    Submitted (FEB-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: D2-2Imported.
  24. "Genome sequences of 11 non-O157 Shiga Toxin-Producing Escherichia coli strains."
    Gabrielsen C., Drablos F., Afset J.E.
    Submitted (FEB-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: St. Olav157Imported, St. Olav172Imported, St. Olav173Imported, St. Olav174Imported, St. Olav40Imported and St. Olav63Imported.
  25. "Genome sequences of 11 non-O157 Shiga Toxin-Producing Escherichia coli strains."
    Gabrielsen C., Afset J.E., Drablos F.
    Submitted (FEB-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: St. Olav17Imported and St. Olav39Imported.
  26. "Sequencing of a sorbitol fermenting O157 E. coli isolate."
    Goldstone R.J., Hamilton S., Smith D.G., Fontaine M.J., Talbot R.
    Submitted (MAR-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: MCI_507Imported.
  27. Informatics Pathogen
    Submitted (MAR-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NCTC9001Imported.
  28. "Construction of Markerless Escherichia coli rrn Deletion Strains for the Study of Translation Inhibitors."
    Quan S., Skovgaard O., McLaughlin R.E., Buurman E.T., Squires C.L.
    Submitted (APR-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: SQ110Imported, SQ171Imported, SQ2203Imported and SQ37Imported.

Entry informationi

Entry nameiQ0P6M2_ECOLX
AccessioniPrimary (citable) accession number: Q0P6M2
Entry historyi
Integrated into UniProtKB/TrEMBL: September 19, 2006
Last sequence update: September 19, 2006
Last modified: July 22, 2015
This is version 68 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.