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Protein

RNA polymerase sigma factor

Gene

rpoE

Organism
Escherichia coli
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingUniRule annotationSAAS annotation, Sigma factorUniRule annotationSAAS annotation
Biological processStress responseImported, Transcription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
RNA polymerase sigma factorUniRule annotation
Gene namesi
Name:rpoEImported
ORF Names:A4T40_18155Imported, A5958_17365Imported, A9R57_17160Imported, AA102_04795Imported, AC067_03255Imported, AC789_1c29100Imported, ACN77_09675Imported, ACN81_26190Imported, ACU57_10240Imported, ACU90_25285Imported, AKG99_13645Imported, AM266_09255Imported, AM270_07330Imported, AMK83_11460Imported, AML07_15800Imported, AML35_26195Imported, APT94_11835Imported, APU18_00100Imported, APZ14_05385Imported, ARC77_09170Imported, AU473_09090Imported, AUQ13_13335Imported, AUS26_21785Imported, AW059_05705Imported, AW106_11200Imported, AWP75_06380Imported, B1K96_17520Imported, BE932_10670Imported, BE957_09800Imported, BE963_28680Imported, BHF46_00095Imported, BHS81_15700Imported, BHS87_14575Imported, BJJ90_06390Imported, BK248_16470Imported, BK292_20880Imported, BK334_05125Imported, BK373_05685Imported, BK375_01110Imported, BK383_23075Imported, BK400_09265Imported, BMT49_16405Imported, BMT53_22540Imported, BMT91_21695Imported, BMT94_06835Imported, BMT97_20115Imported, BN17_18601Imported, BUE81_07875Imported, BUE82_05635Imported, BW690_11020Imported, BWP17_16790Imported, BXT93_10515Imported, CA268_22720Imported, CA270_09035Imported, CA593_13930Imported, EC3234A_44c01800Imported, ECONIH1_14995Imported, ECs3439Imported, EL75_1074Imported, EL79_1085Imported, EL80_1087Imported, ERS085365_01495Imported, ERS085366_02092Imported, ERS085374_00015Imported, ERS085383_04189Imported, ERS085386_03142Imported, ERS085404_01005Imported, ERS085406_03514Imported, ERS085411_03653Imported, ERS085416_03737Imported, ERS139211_00845Imported, ERS139235_04438Imported, ERS150873_01369Imported, ERS150876_00880Imported, FORC28_1378Imported, GJ11_16745Imported, GJ12_17065Imported, HMPREF3040_02703Imported, HW42_17610Imported, JD73_17235Imported, MJ49_18045Imported, MS6198_29060Imported, PGD_00662Imported, PU06_05530Imported, RG28_08990Imported, SK85_02829Imported, SM09_02737Imported, SY51_14730Imported, UC41_13475Imported, UN86_04925Imported, UN91_26310Imported, WM48_14020Imported, WQ89_05960Imported, WR15_00960Imported
OrganismiEscherichia coliImported
Taxonomic identifieri562 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000044893 Componenti: Unassembled WGS sequence
  • UP000078545 Componenti: Chromosome
  • UP000192295 Componenti: Unassembled WGS sequence
  • UP000040932 Componenti: Unassembled WGS sequence
  • UP000193530 Componenti: Unassembled WGS sequence
  • UP000044381 Componenti: Unassembled WGS sequence
  • UP000030018 Componenti: Unassembled WGS sequence
  • UP000030000 Componenti: Unassembled WGS sequence
  • UP000065978 Componenti: Chromosome
  • UP000194247 Componenti: Unassembled WGS sequence
  • UP000038112 Componenti: Unassembled WGS sequence
  • UP000053450 Componenti: Unassembled WGS sequence
  • UP000188724 Componenti: Unassembled WGS sequence
  • UP000070045 Componenti: Unassembled WGS sequence
  • UP000037564 Componenti: Unassembled WGS sequence
  • UP000184379 Componenti: Chromosome
  • UP000177471 Componenti: Chromosome
  • UP000094504 Componenti: Chromosome
  • UP000051846 Componenti: Unassembled WGS sequence
  • UP000194285 Componenti: Unassembled WGS sequence
  • UP000193168 Componenti: Unassembled WGS sequence
  • UP000185913 Componenti: Unassembled WGS sequence
  • UP000040934 Componenti: Unassembled WGS sequence
  • UP000186715 Componenti: Unassembled WGS sequence
  • UP000070450 Componenti: Unassembled WGS sequence
  • UP000185961 Componenti: Unassembled WGS sequence
  • UP000185422 Componenti: Chromosome
  • UP000044469 Componenti: Unassembled WGS sequence
  • UP000036012 Componenti: Unassembled WGS sequence
  • UP000076106 Componenti: Unassembled WGS sequence
  • UP000037153 Componenti: Unassembled WGS sequence
  • UP000028651 Componenti: Unassembled WGS sequence
  • UP000186204 Componenti: Unassembled WGS sequence
  • UP000033371 Componenti: Unassembled WGS sequence
  • UP000186169 Componenti: Unassembled WGS sequence
  • UP000076266 Componenti: Chromosome
  • UP000188855 Componenti: Unassembled WGS sequence
  • UP000036728 Componenti: Unassembled WGS sequence
  • UP000031522 Componenti: Chromosome
  • UP000077539 Componenti: Unassembled WGS sequence
  • UP000029988 Componenti: Unassembled WGS sequence
  • UP000032290 Componenti: Chromosome
  • UP000054864 Componenti: Unassembled WGS sequence
  • UP000077380 Componenti: Unassembled WGS sequence
  • UP000036812 Componenti: Unassembled WGS sequence
  • UP000030790 Componenti: Chromosome
  • UP000188999 Componenti: Unassembled WGS sequence
  • UP000186275 Componenti: Unassembled WGS sequence
  • UP000030834 Componenti: Unassembled WGS sequence
  • UP000194331 Componenti: Chromosome
  • UP000095493 Componenti: Unassembled WGS sequence
  • UP000045242 Componenti: Unassembled WGS sequence
  • UP000185501 Componenti: Chromosome
  • UP000184168 Componenti: Unassembled WGS sequence
  • UP000054277 Componenti: Unassembled WGS sequence
  • UP000194311 Componenti: Chromosome
  • UP000184369 Componenti: Unassembled WGS sequence
  • UP000194319 Componenti: Unassembled WGS sequence
  • UP000188758 Componenti: Unassembled WGS sequence
  • UP000030317 Componenti: Chromosome
  • UP000036405 Componenti: Unassembled WGS sequence
  • UP000076262 Componenti: Unassembled WGS sequence
  • UP000092652 Componenti: Chromosome
  • UP000033592 Componenti: Unassembled WGS sequence
  • UP000050307 Componenti: Unassembled WGS sequence
  • UP000189070 Componenti: Unassembled WGS sequence
  • UP000184459 Componenti: Unassembled WGS sequence
  • UP000184277 Componenti: Unassembled WGS sequence
  • UP000094022 Componenti: Unassembled WGS sequence
  • UP000184336 Componenti: Unassembled WGS sequence
  • UP000094451 Componenti: Chromosome
  • UP000042305 Componenti: Unassembled WGS sequence
  • UP000189626 Componenti: Chromosome
  • UP000034530 Componenti: Chromosome
  • UP000043139 Componenti: Unassembled WGS sequence
  • UP000189671 Componenti: Chromosome
  • UP000184355 Componenti: Unassembled WGS sequence
  • UP000051850 Componenti: Unassembled WGS sequence
  • UP000042887 Componenti: Unassembled WGS sequence
  • UP000189664 Componenti: Chromosome
  • UP000092566 Componenti: Chromosome
  • UP000184178 Componenti: Unassembled WGS sequence
  • UP000050556 Componenti: Unassembled WGS sequence
  • UP000076304 Componenti: Unassembled WGS sequence
  • UP000095183 Componenti: Unassembled WGS sequence
  • UP000044658 Componenti: Unassembled WGS sequence
  • UP000194199 Componenti: Chromosome
  • UP000188967 Componenti: Unassembled WGS sequence
  • UP000041959 Componenti: Unassembled WGS sequence
  • UP000032456 Componenti: Unassembled WGS sequence
  • UP000070338 Componenti: Unassembled WGS sequence
  • UP000043018 Componenti: Unassembled WGS sequence

Interactioni

Protein-protein interaction databases

STRINGi469008.ECD_02467.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4LUPX-ray1.20A/C3-92[»]
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini25 – 91Sigma70_r2InterPro annotationAdd BLAST67
Domaini129 – 180Sigma70_r4_2InterPro annotationAdd BLAST52

Sequence similaritiesi

Belongs to the sigma-70 factor family. ECF subfamily.UniRule annotationSAAS annotation

Phylogenomic databases

eggNOGiENOG4105EMN. Bacteria.
COG1595. LUCA.
HOGENOMiHOG000094755.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiView protein in InterPro
IPR014284. RNA_pol_sigma-70_dom.
IPR000838. RNA_pol_sigma70_ECF_CS.
IPR007627. RNA_pol_sigma70_r2.
IPR013249. RNA_pol_sigma70_r4_t2.
IPR014286. RNA_pol_sigma70_RpoE.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
PfamiView protein in Pfam
PF04542. Sigma70_r2. 1 hit.
PF08281. Sigma70_r4_2. 1 hit.
SUPFAMiSSF88659. SSF88659. 1 hit.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02939. RpoE_Sigma70. 1 hit.
TIGR02937. sigma70-ECF. 1 hit.
PROSITEiView protein in PROSITE
PS01063. SIGMA70_ECF. 1 hit.

Sequencei

Sequence statusi: Complete.

Q0P6M2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSEQLTDQVL VERVQKGDQK AFNLLVVRYQ HKVASLVSRY VPSGDVPDVV
60 70 80 90 100
QEAFIKAYRA LDSFRGDSAF YTWLYRIAVN TAKNYLVAQG RRPPSSDVDA
110 120 130 140 150
IEAENFESGG ALKEISNPEN LMLSEELRQI VFRTIESLPE DLRMAITLRE
160 170 180 190
LDGLSYEEIA AIMDCPVGTV RSRIFRAREA IDNKVQPLIR R
Length:191
Mass (Da):21,696
Last modified:September 19, 2006 - v1
Checksum:iC71EEF5939C3611E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY616598 Genomic DNA. Translation: AAZ80065.1.
EU897165 Genomic DNA. Translation: ACI79721.1.
EU897166 Genomic DNA. Translation: ACI79722.1.
EU897167 Genomic DNA. Translation: ACI79723.1.
EU897168 Genomic DNA. Translation: ACI79724.1.
EU897169 Genomic DNA. Translation: ACI79725.1.
CP009859 Genomic DNA. Translation: AIX64462.1.
CP009104 Genomic DNA. Translation: AIZ83649.1.
CP010315 Genomic DNA. Translation: AJE57134.1.
CP010876 Genomic DNA. Translation: AJO84602.1.
CP011416 Genomic DNA. Translation: AKH23280.1.
CP013025 Genomic DNA. Translation: ALL89369.1.
CP015020 Genomic DNA. Translation: AMW42407.1.
CP014667 Genomic DNA. Translation: ANK33349.1.
CP015229 Genomic DNA. Translation: ANO90346.1.
CP015228 Genomic DNA. Translation: ANP19408.1.
CP012693 Genomic DNA. Translation: AOM44369.1.
CP015834 Genomic DNA. Translation: AOM70985.1.
CP017669 Genomic DNA. Translation: APA41029.1.
CP010122 Genomic DNA. Translation: APJ76397.1.
CP017631 Genomic DNA. Translation: APT01668.1.
CP018770 Genomic DNA. Translation: APT61472.1.
CP018948 Genomic DNA. Translation: AQV19441.1.
CP018957 Genomic DNA. Translation: AQV33252.1.
CP018991 Genomic DNA. Translation: AQV72893.1.
CP021175 Genomic DNA. Translation: ARR34116.1.
CP021202 Genomic DNA. Translation: ARR61984.1.
CP021207 Genomic DNA. Translation: ARR65022.1.
HE964769 Genomic DNA. Translation: CCJ45076.1.
HG976952 Genomic DNA. Translation: CDU37595.1.
CXZU01000001 Genomic DNA. Translation: CTR29219.1.
CYAQ01000010 Genomic DNA. Translation: CTS34529.1.
CYAV01000018 Genomic DNA. Translation: CTS87771.1.
CYBM01000016 Genomic DNA. Translation: CTT99489.1.
CYBJ01000030 Genomic DNA. Translation: CTT99552.1.
CYCH01000004 Genomic DNA. Translation: CTU71773.1.
CYBW01000020 Genomic DNA. Translation: CTU88514.1.
CYDH01000007 Genomic DNA. Translation: CTV28771.1.
CYCK01000028 Genomic DNA. Translation: CTW08041.1.
CYCX01000035 Genomic DNA. Translation: CTW57679.1.
CYEC01000032 Genomic DNA. Translation: CTY17777.1.
CYFX01000006 Genomic DNA. Translation: CTZ21397.1.
CYGC01000004 Genomic DNA. Translation: CTZ48004.1.
JPQG01000003 Genomic DNA. Translation: KFD75417.1.
JPKH01000009 Genomic DNA. Translation: KGM70933.1.
JPKL01000018 Genomic DNA. Translation: KGM83109.1.
JPMZ01000007 Genomic DNA. Translation: KGM84502.1.
JUDN01000027 Genomic DNA. Translation: KHJ21501.1.
JYEF01000051 Genomic DNA. Translation: KJH07250.1.
JZDU01000048 Genomic DNA. Translation: KJW36086.1.
JZDZ01000126 Genomic DNA. Translation: KJW44396.1.
LEUM01000017 Genomic DNA. Translation: KLX95874.1.
LEYN01000021 Genomic DNA. Translation: KME68869.1.
LGZN01000006 Genomic DNA. Translation: KNF72172.1.
LGZP01000006 Genomic DNA. Translation: KNF81631.1.
LHAT01000031 Genomic DNA. Translation: KNZ98567.1.
LFZI01000002 Genomic DNA. Translation: KOA36894.1.
LDYI01000079 Genomic DNA. Translation: KPO13042.1.
LECN01000165 Genomic DNA. Translation: KPO45518.1.
LIVE01000012 Genomic DNA. Translation: KQJ16368.1.
LIVI01000006 Genomic DNA. Translation: KQJ45025.1.
LMBK01000157 Genomic DNA. Translation: KST33690.1.
LNHR01000183 Genomic DNA. Translation: KSX86135.1.
LNIP01000012 Genomic DNA. Translation: KSZ20211.1.
LSNZ01000091 Genomic DNA. Translation: KXG98323.1.
LPXZ01000218 Genomic DNA. Translation: KXL57113.1.
LOOZ01000019 Genomic DNA. Translation: KXR90395.1.
LOFS01000158 Genomic DNA. Translation: KYR50978.1.
LOGT01000177 Genomic DNA. Translation: KYS86030.1.
LOCS01000122 Genomic DNA. Translation: KYV71100.1.
LCVH01000044 Genomic DNA. Translation: OAC43574.1.
LXPG01000002 Genomic DNA. Translation: OAJ88330.1.
LZEH01000232 Genomic DNA. Translation: OEI61275.1.
MIWY01000001 Genomic DNA. Translation: OEN37731.1.
MOFD01000032 Genomic DNA. Translation: OJK74151.1.
MOGU01000036 Genomic DNA. Translation: OJM89602.1.
MOIL01000006 Genomic DNA. Translation: OJP16151.1.
MOJX01000009 Genomic DNA. Translation: OJR05769.1.
MOKA01000001 Genomic DNA. Translation: OJR19985.1.
MOKI01000052 Genomic DNA. Translation: OJR51884.1.
MOKZ01000006 Genomic DNA. Translation: OJS90335.1.
MPGQ01000001 Genomic DNA. Translation: OKB79787.1.
MPGT01000001 Genomic DNA. Translation: OKB92075.1.
LGMU01000102 Genomic DNA. Translation: OKU13609.1.
LGMY01000291 Genomic DNA. Translation: OKU13647.1.
LRLE01000024 Genomic DNA. Translation: OKW22279.1.
MSEK01000053 Genomic DNA. Translation: OLR87822.1.
MTKH01000079 Genomic DNA. Translation: ONG29165.1.
MTPS01000155 Genomic DNA. Translation: ONG34977.1.
MTFS01000025 Genomic DNA. Translation: OOC78374.1.
MOZG01000006 Genomic DNA. Translation: OOJ08971.1.
MOZJ01000034 Genomic DNA. Translation: OOJ17129.1.
MPAF01000054 Genomic DNA. Translation: OOK24931.1.
NCRV01000002 Genomic DNA. Translation: ORD26258.1.
NAHY01000249 Genomic DNA. Translation: ORJ76148.1.
NAFT01000055 Genomic DNA. Translation: ORT02530.1.
NEME01000003 Genomic DNA. Translation: OTB40459.1.
NENZ01000018 Genomic DNA. Translation: OTE00640.1.
NBCM01000022 Genomic DNA. Translation: OTE91546.1.
RefSeqiWP_001295364.1. NZ_NEFU01000002.1.

Genome annotation databases

EnsemblBacteriaiAIX64462; AIX64462; ECONIH1_14995.
AIZ83649; AIZ83649; HW42_17610.
AJE57134; AJE57134; AC789_1c29100.
AJO84602; AJO84602; SY51_14730.
AKH23280; AKH23280; AA102_04795.
ALD24180; ALD24180; AN206_06935.
ALL89369; ALL89369; MJ49_18045.
ALZ67576; ALZ67576; AWH59_16115.
AMW42407; AMW42407; ARC77_09170.
AMX14860; AMX14860; A4X18_15855.
ANK33349; ANK33349; WM48_14020.
ANM83317; ANM83317; A8V37_12710.
ANO90346; ANO90346; GJ11_16745.
ANP19408; ANP19408; GJ12_17065.
AOM44369; AOM44369; FORC28_1378.
AOM70985; AOM70985; MS6198_29060.
AOT31733; AOT31733; FORC31_1268.
CDU37595; CDU37595; PGD_00662.
CTR29219; CTR29219; ERS085374_00015.
CTS34529; CTS34529; ERS085365_01495.
CTS87771; CTS87771; ERS085366_02092.
CTT99489; CTT99489; ERS085386_03142.
CTT99552; CTT99552; ERS085383_04189.
CTU71773; CTU71773; ERS085404_01005.
CTU88514; CTU88514; ERS085406_03514.
CTV28771; CTV28771; ERS139211_00845.
CTW08041; CTW08041; ERS085411_03653.
CTW57679; CTW57679; ERS085416_03737.
CTX54881; CTX54881; ERS139266_00015.
CTX84384; CTX84384; ERS139269_00015.
CTY17777; CTY17777; ERS139235_04438.
CTZ21397; CTZ21397; ERS150873_01369.
CTZ48004; CTZ48004; ERS150876_00880.
KFD75417; KFD75417; JD73_17235.
KGM70933; KGM70933; EL75_1074.
KGM83109; KGM83109; EL80_1087.
KGM84502; KGM84502; EL79_1085.
KHH07640; KHH07640; PU69_17775.
KHI36316; KHI36316; PU33_05105.
KHJ21501; KHJ21501; PU06_05530.
KIG81739; KIG81739; PU38_07870.
KIH02970; KIH02970; PU21_16955.
KIH33398; KIH33398; PD07_25345.
KIQ46719; KIQ46719; IY32_09680.
KJH07250; KJH07250; UC41_13475.
KJW36086; KJW36086; UN86_04925.
KJW44396; KJW44396; UN91_26310.
KLG79650; KLG79650; WR12_02660.
KLX58638; KLX58638; SK78_01708.
KLX82559; KLX82559; SK83_04660.
KLX95874; KLX95874; SK85_02829.
KME68869; KME68869; SM09_02737.
KNF72172; KNF72172; WR15_00960.
KNF81631; KNF81631; WQ89_05960.
KNY74216; KNY74216; AGA26_17015.
KNZ98567; KNZ98567; AKG99_13645.
KOA36894; KOA36894; AC067_03255.
KPO13042; KPO13042; ACU57_10240.
KPO36804; KPO36804; ACU81_16920.
KPO45518; KPO45518; ACU90_25285.
KQJ16368; KQJ16368; AM266_09255.
KQJ45025; KQJ45025; AM270_07330.
KST33690; KST33690; APZ14_05385.
KSX86135; KSX86135; APT94_11835.
KSZ20211; KSZ20211; APU18_00100.
KUU39830; KUU39830; AWF22_03055.
KXG88279; KXG88279; HMPREF3041_05500.
KXG98323; KXG98323; HMPREF3040_02703.
KXI02698; KXI02698; AXE68_09795.
KXL57113; KXL57113; AUS26_21785.
KXQ38919; KXQ38919; AUQ01_15035.
KYR50978; KYR50978; AML07_15800.
KYS86030; KYS86030; AML35_26195.
KYV71100; KYV71100; AMK83_11460.
KZJ56519; KZJ56519; AWG90_00980.
OAC43574; OAC43574; EC3234A_44c01800.
OAF39852; OAF39852; AXK33_17665.
OAJ88330; OAJ88330; A5958_17365.
OAO69201; OAO69201; OO96_10605.
OAO74733; OAO74733; OK10_06225.
OAS94927; OAS94927; A6I92_14115.
OCO38267; OCO38267; AN669_0220605.
OCS74096; OCS74096; BBZ52_13445.
ODA84782; ODA84782; A9D65_12215.
ODH24147; ODH24147; A6804_07535.
ODH29519; ODH29519; A6803_13735.
OEG67599; OEG67599; A7H95_21085.
OEI61275; OEI61275; A9R57_17160.
OEN37731; OEN37731; BHF46_00095.
PATRICifig|562.10471.peg.2972.

Similar proteinsi

Entry informationi

Entry nameiQ0P6M2_ECOLX
AccessioniPrimary (citable) accession number: Q0P6M2
Secondary accession number(s): A0A0J3VU61
Entry historyiIntegrated into UniProtKB/TrEMBL: September 19, 2006
Last sequence update: September 19, 2006
Last modified: September 27, 2017
This is version 92 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteomeImported