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Protein

RNA polymerase sigma factor

Gene

rpoE

Organism
Escherichia coli
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Sigma factorUniRule annotationSAAS annotation

Keywords - Biological processi

Stress responseImported, Transcription, Transcription regulation

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Recommended name:
RNA polymerase sigma factorUniRule annotation
Gene namesi
Name:rpoEImported
ORF Names:AA102_04795Imported, AB850_07620Imported, ABW50_06050Imported, AC065_11905Imported, AC066_06940Imported, AC067_03255Imported, AC789_1c29100Imported, ACU57_10240Imported, ACU66_16885Imported, ACU67_18720Imported, ACU68_04350Imported, ACU72_11740Imported, ACU77_00885Imported, ACU79_20145Imported, ACU80_14335Imported, ACU81_16920Imported, ACU83_27035Imported, ACU86_14995Imported, ACU87_23775Imported, ACU88_19105Imported, ACU90_25285Imported, ACU94_14245Imported, ACU98_13200Imported, AGA26_17015Imported, AKG99_13645Imported, AM258_11720Imported, AM260_08265Imported, AM261_02785Imported, AM263_13365Imported, AM264_19895Imported, AM265_05500Imported, AM266_09255Imported, AM267_15350Imported, AM268_11890Imported, AM269_13130Imported, AM270_07330Imported, AM271_11420Imported, AM272_08555Imported, AM273_10555Imported, AML92_12645Imported, AN203_06290Imported, AN204_06665Imported, AN205_06270Imported, AN206_06935Imported, AN669_09910Imported, ASE18_11335Imported, ATL78_03535Imported, BN17_18601Imported, BN1843_31470Imported, ECONIH1_14995Imported, ECs3439Imported, EL75_1074Imported, EL79_1085Imported, EL80_1087Imported, ERS085365_01495Imported, ERS085366_02092Imported, ERS085367_00015Imported, ERS085374_00015Imported, ERS085383_04189Imported, ERS085386_03142Imported, ERS085404_01005Imported, ERS085406_03514Imported, ERS085411_03653Imported, ERS085416_03737Imported, ERS139211_00845Imported, ERS139215_02542Imported, ERS139224_00514Imported, ERS139235_04438Imported, ERS139266_00015Imported, ERS139269_00015Imported, ERS150873_01369Imported, ERS150876_00880Imported, ERS150905_00516Imported, ERS451419_00023Imported, ExPEC_1279Imported, HW42_17610Imported, IY32_09680Imported, JD73_17235Imported, MJ49_18045Imported, PD07_25345Imported, PGD_00662Imported, PU06_05530Imported, PU15_00545Imported, PU21_16955Imported, PU33_05105Imported, PU38_07870Imported, PU69_17775Imported, QR62_09515Imported, QR63_09515Imported, SK74_02992Imported, SK78_01708Imported, SK83_04660Imported, SK85_02829Imported, SM09_02737Imported, SR35_13145Imported, SY51_14730Imported, UC41_13475Imported, UN91_26310Imported, UN92_00960Imported, WQ64_10145Imported, WQ70_16305Imported, WQ71_05340Imported, WQ73_10670Imported, WQ74_14715Imported, WQ77_26480Imported, WQ79_12095Imported, WQ84_10735Imported, WQ86_01785Imported, WQ89_05960Imported, WQ91_00585Imported, WQ92_07710Imported, WQ95_08795Imported, WQ96_17085Imported, WQ99_17530Imported, WR00_01610Imported, WR01_09925Imported, WR03_24680Imported, WR04_12750Imported, WR05_25420Imported, WR12_02660Imported, WR13_13835Imported, WR15_00960Imported, WR17_08775Imported, WR24_14050Imported, XB00_03910Imported
OrganismiEscherichia coliImported
Taxonomic identifieri562 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000040932 Componenti: Unassembled WGS sequence
  • UP000044381 Componenti: Unassembled WGS sequence
  • UP000030018 Componenti: Unassembled WGS sequence
  • UP000030000 Componenti: Unassembled WGS sequence
  • UP000030824 Componenti: Unassembled WGS sequence
  • UP000036048 Componenti: Unassembled WGS sequence
  • UP000037564 Componenti: Unassembled WGS sequence
  • UP000035248 Componenti: Unassembled WGS sequence
  • UP000040934 Componenti: Unassembled WGS sequence
  • UP000035404 Componenti: Unassembled WGS sequence
  • UP000037617 Componenti: Unassembled WGS sequence
  • UP000036012 Componenti: Unassembled WGS sequence
  • UP000050268 Componenti: Unassembled WGS sequence
  • UP000037153 Componenti: Unassembled WGS sequence
  • UP000036894 Componenti: Unassembled WGS sequence
  • UP000036728 Componenti: Unassembled WGS sequence
  • UP000031522 Componenti: Chromosome
  • UP000029988 Componenti: Unassembled WGS sequence
  • UP000050456 Componenti: Unassembled WGS sequence
  • UP000050358 Componenti: Unassembled WGS sequence
  • UP000030834 Componenti: Unassembled WGS sequence
  • UP000030823 Componenti: Unassembled WGS sequence
  • UP000045242 Componenti: Unassembled WGS sequence
  • UP000050532 Componenti: Unassembled WGS sequence
  • UP000050393 Componenti: Unassembled WGS sequence
  • UP000035334 Componenti: Unassembled WGS sequence
  • UP000035274 Componenti: Unassembled WGS sequence
  • UP000037479 Componenti: Unassembled WGS sequence
  • UP000030317 Componenti: Chromosome
  • UP000036405 Componenti: Unassembled WGS sequence
  • UP000030860 Componenti: Unassembled WGS sequence
  • UP000035176 Componenti: Unassembled WGS sequence
  • UP000035345 Componenti: Unassembled WGS sequence
  • UP000050307 Componenti: Unassembled WGS sequence
  • UP000031568 Componenti: Unassembled WGS sequence
  • UP000042305 Componenti: Unassembled WGS sequence
  • UP000035538 Componenti: Unassembled WGS sequence
  • UP000035344 Componenti: Unassembled WGS sequence
  • UP000034530 Componenti: Chromosome
  • UP000035552 Componenti: Unassembled WGS sequence
  • UP000043139 Componenti: Unassembled WGS sequence
  • UP000036236 Componenti: Unassembled WGS sequence
  • UP000050541 Componenti: Unassembled WGS sequence
  • UP000035483 Componenti: Unassembled WGS sequence
  • UP000028873 Componenti: Unassembled WGS sequence
  • UP000044658 Componenti: Unassembled WGS sequence
  • UP000050415 Componenti: Unassembled WGS sequence
  • UP000050524 Componenti: Unassembled WGS sequence
  • UP000041959 Componenti: Unassembled WGS sequence
  • UP000039789 Componenti: Unassembled WGS sequence
  • UP000044713 Componenti: Unassembled WGS sequence
  • UP000035551 Componenti: Unassembled WGS sequence
  • UP000044893 Componenti: Unassembled WGS sequence
  • UP000050316 Componenti: Unassembled WGS sequence
  • UP000003252 Componenti: Chromosome IMT2125
  • UP000035333 Componenti: Unassembled WGS sequence
  • UP000035160 Componenti: Unassembled WGS sequence
  • UP000038112 Componenti: Unassembled WGS sequence
  • UP000032094 Componenti: Unassembled WGS sequence
  • UP000051846 Componenti: Unassembled WGS sequence
  • UP000031589 Componenti: Unassembled WGS sequence
  • UP000044469 Componenti: Unassembled WGS sequence
  • UP000051523 Componenti: Unassembled WGS sequence
  • UP000036158 Componenti: Unassembled WGS sequence
  • UP000028651 Componenti: Unassembled WGS sequence
  • UP000031566 Componenti: Unassembled WGS sequence
  • UP000033371 Componenti: Unassembled WGS sequence
  • UP000050434 Componenti: Unassembled WGS sequence
  • UP000043196 Componenti: Unassembled WGS sequence
  • UP000032290 Componenti: Chromosome
  • UP000050409 Componenti: Unassembled WGS sequence
  • UP000030790 Componenti: Chromosome
  • UP000036812 Componenti: Unassembled WGS sequence
  • UP000035390 Componenti: Unassembled WGS sequence
  • UP000050279 Componenti: Unassembled WGS sequence
  • UP000035273 Componenti: Unassembled WGS sequence
  • UP000033728 Componenti: Unassembled WGS sequence
  • UP000035424 Componenti: Unassembled WGS sequence
  • UP000035388 Componenti: Unassembled WGS sequence
  • UP000037622 Componenti: Unassembled WGS sequence
  • UP000035502 Componenti: Unassembled WGS sequence
  • UP000050270 Componenti: Unassembled WGS sequence
  • UP000050281 Componenti: Unassembled WGS sequence
  • UP000035354 Componenti: Unassembled WGS sequence
  • UP000035153 Componenti: Unassembled WGS sequence
  • UP000043047 Componenti: Unassembled WGS sequence
  • UP000043251 Componenti: Unassembled WGS sequence
  • UP000035496 Componenti: Unassembled WGS sequence
  • UP000042944 Componenti: Unassembled WGS sequence
  • UP000051850 Componenti: Unassembled WGS sequence
  • UP000042887 Componenti: Unassembled WGS sequence
  • UP000035564 Componenti: Unassembled WGS sequence
  • UP000050556 Componenti: Unassembled WGS sequence
  • UP000035504 Componenti: Unassembled WGS sequence
  • UP000051437 Componenti: Unassembled WGS sequence
  • UP000032456 Componenti: Unassembled WGS sequence
  • UP000035384 Componenti: Unassembled WGS sequence
  • UP000050363 Componenti: Unassembled WGS sequence
  • UP000043018 Componenti: Unassembled WGS sequence

Interactioni

Protein-protein interaction databases

STRINGi469008.ECD_02467.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4LUPX-ray1.20A/C3-92[»]
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini25 – 9167Sigma70_r2InterPro annotationAdd
BLAST
Domaini129 – 18052Sigma70_r4_2InterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the sigma-70 factor family. ECF subfamily.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105EMN. Bacteria.
COG1595. LUCA.
HOGENOMiHOG000094755.
OMAiDAENYES.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR000838. RNA_pol_sigma70_ECF_CS.
IPR007627. RNA_pol_sigma70_r2.
IPR013249. RNA_pol_sigma70_r4_t2.
IPR014286. RNA_pol_sigma70_RpoE.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF04542. Sigma70_r2. 1 hit.
PF08281. Sigma70_r4_2. 1 hit.
[Graphical view]
SUPFAMiSSF88659. SSF88659. 1 hit.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02939. RpoE_Sigma70. 1 hit.
TIGR02937. sigma70-ECF. 1 hit.
PROSITEiPS01063. SIGMA70_ECF. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q0P6M2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSEQLTDQVL VERVQKGDQK AFNLLVVRYQ HKVASLVSRY VPSGDVPDVV
60 70 80 90 100
QEAFIKAYRA LDSFRGDSAF YTWLYRIAVN TAKNYLVAQG RRPPSSDVDA
110 120 130 140 150
IEAENFESGG ALKEISNPEN LMLSEELRQI VFRTIESLPE DLRMAITLRE
160 170 180 190
LDGLSYEEIA AIMDCPVGTV RSRIFRAREA IDNKVQPLIR R
Length:191
Mass (Da):21,696
Last modified:September 19, 2006 - v1
Checksum:iC71EEF5939C3611E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY616598 Genomic DNA. Translation: AAZ80065.1.
EU897165 Genomic DNA. Translation: ACI79721.1.
EU897166 Genomic DNA. Translation: ACI79722.1.
EU897167 Genomic DNA. Translation: ACI79723.1.
EU897168 Genomic DNA. Translation: ACI79724.1.
EU897169 Genomic DNA. Translation: ACI79725.1.
CP009859 Genomic DNA. Translation: AIX64462.1.
CP009104 Genomic DNA. Translation: AIZ83649.1.
CP010315 Genomic DNA. Translation: AJE57134.1.
CP010876 Genomic DNA. Translation: AJO84602.1.
CP011416 Genomic DNA. Translation: AKH23280.1.
CP011113 Genomic DNA. Translation: ALB32662.1.
CP012625 Genomic DNA. Translation: ALD24180.1.
CP012631 Genomic DNA. Translation: ALD29298.1.
CP012633 Genomic DNA. Translation: ALD34313.1.
CP012635 Genomic DNA. Translation: ALD39017.1.
CP012869 Genomic DNA. Translation: ALI44087.1.
CP012870 Genomic DNA. Translation: ALI48485.1.
CP013025 Genomic DNA. Translation: ALL89369.1.
CP013112 Genomic DNA. Translation: ALN46645.1.
CP013048 Genomic DNA. Translation: ALQ58379.1.
CP013253 Genomic DNA. Translation: ALQ71755.1.
HE964769 Genomic DNA. Translation: CCJ45076.1.
CCCP010000007 Genomic DNA. Translation: CDP70404.1.
HG976952 Genomic DNA. Translation: CDU37595.1.
LN831040 Genomic DNA. Translation: CKG80751.1.
CXZO01000001 Genomic DNA. Translation: CTR27443.1.
CXZU01000001 Genomic DNA. Translation: CTR29219.1.
CYAQ01000010 Genomic DNA. Translation: CTS34529.1.
CYAV01000018 Genomic DNA. Translation: CTS87771.1.
CYBM01000016 Genomic DNA. Translation: CTT99489.1.
CYBJ01000030 Genomic DNA. Translation: CTT99552.1.
CYCH01000004 Genomic DNA. Translation: CTU71773.1.
CYBW01000020 Genomic DNA. Translation: CTU88514.1.
CYDH01000007 Genomic DNA. Translation: CTV28771.1.
CYDR01000001 Genomic DNA. Translation: CTV72161.1.
CYCK01000028 Genomic DNA. Translation: CTW08041.1.
CYDI01000020 Genomic DNA. Translation: CTW31077.1.
CYCX01000035 Genomic DNA. Translation: CTW57679.1.
CYFC01000001 Genomic DNA. Translation: CTX54881.1.
CYFJ01000001 Genomic DNA. Translation: CTX84384.1.
CYEC01000032 Genomic DNA. Translation: CTY17777.1.
CYFX01000006 Genomic DNA. Translation: CTZ21397.1.
CYGC01000004 Genomic DNA. Translation: CTZ48004.1.
CYGU01000002 Genomic DNA. Translation: CUA56380.1.
LN877770 Genomic DNA. Translation: CUQ97815.1.
JPQG01000003 Genomic DNA. Translation: KFD75417.1.
JPKH01000009 Genomic DNA. Translation: KGM70933.1.
JPKL01000018 Genomic DNA. Translation: KGM83109.1.
JPMZ01000007 Genomic DNA. Translation: KGM84502.1.
JUBW01000040 Genomic DNA. Translation: KHH07640.1.
JUCW01000017 Genomic DNA. Translation: KHI36316.1.
JUDH01000001 Genomic DNA. Translation: KHJ00055.1.
JUDN01000027 Genomic DNA. Translation: KHJ21501.1.
JWZF01000032 Genomic DNA. Translation: KIG81739.1.
JWZL01000025 Genomic DNA. Translation: KIH02970.1.
JWZR01000174 Genomic DNA. Translation: KIH33398.1.
JPPP01000011 Genomic DNA. Translation: KIQ46719.1.
JYEF01000051 Genomic DNA. Translation: KJH07250.1.
JZDZ01000126 Genomic DNA. Translation: KJW44396.1.
JZEA01000065 Genomic DNA. Translation: KJW66278.1.
LBDC01000001 Genomic DNA. Translation: KLD53853.1.
LDCS01000006 Genomic DNA. Translation: KLG37755.1.
LDCR01000013 Genomic DNA. Translation: KLG43662.1.
LDCV01000024 Genomic DNA. Translation: KLG52457.1.
LDCW01000019 Genomic DNA. Translation: KLG62418.1.
LDCX01000003 Genomic DNA. Translation: KLG69641.1.
LDCY01000030 Genomic DNA. Translation: KLG71549.1.
LDCZ01000007 Genomic DNA. Translation: KLG79650.1.
LDDB01000183 Genomic DNA. Translation: KLG80362.1.
LDDA01000027 Genomic DNA. Translation: KLG82878.1.
LDDC01000089 Genomic DNA. Translation: KLG86302.1.
LDDD01000090 Genomic DNA. Translation: KLG94753.1.
LDDF01000018 Genomic DNA. Translation: KLH06280.1.
LDDI01000023 Genomic DNA. Translation: KLH22930.1.
LDDJ01000022 Genomic DNA. Translation: KLH28606.1.
LDDK01000046 Genomic DNA. Translation: KLH33140.1.
LDDM01000027 Genomic DNA. Translation: KLH43310.1.
LDDN01000048 Genomic DNA. Translation: KLH48154.1.
LDDO01000046 Genomic DNA. Translation: KLH49912.1.
LDDP01000025 Genomic DNA. Translation: KLH59001.1.
LDDQ01000025 Genomic DNA. Translation: KLH67665.1.
LDDR01000020 Genomic DNA. Translation: KLH69516.1.
LDDV01000035 Genomic DNA. Translation: KLH85298.1.
LDDU01000002 Genomic DNA. Translation: KLH91755.1.
LEUF01000007 Genomic DNA. Translation: KLX58638.1.
LEUB01000031 Genomic DNA. Translation: KLX65751.1.
LEUK01000022 Genomic DNA. Translation: KLX82559.1.
LEUM01000017 Genomic DNA. Translation: KLX95874.1.
LEYN01000021 Genomic DNA. Translation: KME68869.1.
LGZN01000006 Genomic DNA. Translation: KNF72172.1.
LGZP01000006 Genomic DNA. Translation: KNF81631.1.
LHCQ01000021 Genomic DNA. Translation: KNY74216.1.
LHAT01000031 Genomic DNA. Translation: KNZ98567.1.
LFZH01000009 Genomic DNA. Translation: KOA23761.1.
LFZJ01000005 Genomic DNA. Translation: KOA30084.1.
LFZI01000002 Genomic DNA. Translation: KOA36894.1.
LDVY01000017 Genomic DNA. Translation: KOR06166.1.
LDYI01000079 Genomic DNA. Translation: KPO13042.1.
LECL01000090 Genomic DNA. Translation: KPO36804.1.
LECN01000165 Genomic DNA. Translation: KPO45518.1.
LECM01000197 Genomic DNA. Translation: KPO49642.1.
LECH01000091 Genomic DNA. Translation: KPO73077.1.
LECJ01000085 Genomic DNA. Translation: KPO83416.1.
LECK01000129 Genomic DNA. Translation: KPO84200.1.
LEAA01000218 Genomic DNA. Translation: KPO90618.1.
LDZZ01000135 Genomic DNA. Translation: KPO93866.1.
LEAB01000132 Genomic DNA. Translation: KPP02596.1.
LEAC01000126 Genomic DNA. Translation: KPP08672.1.
LEAD01000122 Genomic DNA. Translation: KPP14005.1.
LEAF01000122 Genomic DNA. Translation: KPP25568.1.
LEAE01000020 Genomic DNA. Translation: KPP27757.1.
LEAH01000091 Genomic DNA. Translation: KPP38209.1.
LEAJ01000002 Genomic DNA. Translation: KPP53169.1.
LJDY01000034 Genomic DNA. Translation: KPR33067.1.
LIQA01000009 Genomic DNA. Translation: KQC26171.1.
LIUW01000008 Genomic DNA. Translation: KQI76022.1.
LIUY01000008 Genomic DNA. Translation: KQI86412.1.
LIUZ01000003 Genomic DNA. Translation: KQI92247.1.
LIVB01000016 Genomic DNA. Translation: KQI96115.1.
LIVC01000057 Genomic DNA. Translation: KQJ03108.1.
LIVD01000008 Genomic DNA. Translation: KQJ10474.1.
LIVE01000012 Genomic DNA. Translation: KQJ16368.1.
LIVF01000017 Genomic DNA. Translation: KQJ18620.1.
LIVG01000015 Genomic DNA. Translation: KQJ24177.1.
LIVH01000018 Genomic DNA. Translation: KQJ29004.1.
LIVJ01000008 Genomic DNA. Translation: KQJ34030.1.
LIVK01000007 Genomic DNA. Translation: KQJ41981.1.
LIVI01000006 Genomic DNA. Translation: KQJ45025.1.
LIVL01000009 Genomic DNA. Translation: KQJ49246.1.
LJCG01000017 Genomic DNA. Translation: KQL79599.1.
RefSeqiWP_001295364.1. NZ_LNAE01000003.1.

Genome annotation databases

EnsemblBacteriaiAIX64462; AIX64462; ECONIH1_14995.
AIZ88154; AIZ88154; HW43_17270.
AJB52685; AJB52685; RR31_13730.
AJE57134; AJE57134; AC789_1c29100.
AJO84602; AJO84602; SY51_14730.
AKK43680; AKK43680; NMECO18_12810.
CCQ29977; CCQ29977; HUS2011_3099.
CDU37595; CDU37595; PGD_00662.
CDY60586; CDY60586; ECHMS174_02588.
CDZ21388; CDZ21388; ECRV308_02582.
CEE10906; CEE10906; BN1008_4328.
KFD75417; KFD75417; JD73_17235.
KGM70933; KGM70933; EL75_1074.
KGM74936; KGM74936; EL78_1101.
KGM83109; KGM83109; EL80_1087.
KGM84502; KGM84502; EL79_1085.
KGP55392; KGP55392; LS90_02815.
KHD43325; KHD43325; LS39_03900.
KHD55788; KHD55788; LS40_03000.
KHG91489; KHG91489; PU73_21575.
KHG95308; KHG95308; PU71_24440.
KHH07640; KHH07640; PU69_17775.
KHI36316; KHI36316; PU33_05105.
KHJ00055; KHJ00055; PU15_00545.
KHJ21501; KHJ21501; PU06_05530.
KIG54660; KIG54660; PU53_06735.
KIG81739; KIG81739; PU38_07870.
KIH02970; KIH02970; PU21_16955.
KIH33398; KIH33398; PD07_25345.
KIQ46719; KIQ46719; IY32_09680.
KIY29209; KIY29209; TB57_07980.
KIZ12372; KIZ12372; UC39_03835.
KIZ61969; KIZ61969; UH28_09040.
KIZ67127; KIZ67127; UH34_03425.
KIZ69586; KIZ69586; UH31_06785.
KIZ74441; KIZ74441; UH35_08490.
KIZ77653; KIZ77653; UH32_13465.
KIZ84913; KIZ84913; UH29_05090.
KIZ90641; KIZ90641; UH37_02035.
KIZ93061; KIZ93061; UH33_09950.
KIZ98188; KIZ98188; UH36_07645.
KJA01169; KJA01169; UH27_15885.
KJA04378; KJA04378; UH30_20610.
KJD63684; KJD63684; LT79_07520.
KJD69366; KJD69366; LP50_05285.
KJD79476; KJD79476; LR66_07485.
KJD81097; KJD81097; LR65_10550.
KJD82992; KJD82992; LR67_07520.
KJD92307; KJD92307; LV67_02495.
KJD94494; KJD94494; LV68_09650.
KJG95479; KJG95479; UC40_21155.
KJH01636; KJH01636; TS82_14725.
KJH07250; KJH07250; UC41_13475.
KJI07737; KJI07737; UO94_08330.
KJI11021; KJI11021; UO92_10685.
KJI27063; KJI27063; UO95_06445.
KJW36086; KJW36086; UN86_04925.
KJW44396; KJW44396; UN91_26310.
KJW66278; KJW66278; UN92_00960.
KJY11195; KJY11195; UC21_14160.
KLD48659; KLD48659; XB01_02350.
KLD53853; KLD53853; XB00_03910.
KLG30692; KLG30692; WQ65_14705.
KLG37755; KLG37755; WQ86_01785.
KLG43662; KLG43662; WQ92_07710.
KLG47427; KLG47427; WR16_04755.
KLG50578; KLG50578; WQ68_20345.
KLG52457; KLG52457; WQ74_14715.
KLG62418; KLG62418; WQ95_08795.
KLG69641; KLG69641; WR00_01610.
KLG71549; KLG71549; WR24_14050.
KLG79650; KLG79650; WR12_02660.
KLG80362; KLG80362; WQ77_26480.
KLG82878; KLG82878; WR01_09925.
KLG86302; KLG86302; WR05_25420.
KLG94753; KLG94753; WR03_24680.
KLH06280; KLH06280; WQ71_05340.
KLH13690; KLH13690; WR23_11285.
KLH16959; KLH16959; WQ72_12715.
KLH22930; KLH22930; WR13_13835.
KLH28606; KLH28606; WR17_08775.
KLH31556; KLH31556; WQ69_22535.
KLH33140; KLH33140; WQ96_17085.
KLH43310; KLH43310; WQ84_10735.
KLH48154; KLH48154; WQ99_17530.
KLH49912; KLH49912; WQ70_16305.
KLH59001; KLH59001; WQ64_10145.
KLH67665; KLH67665; WQ79_12095.
KLH69516; KLH69516; WQ73_10670.
KLH71517; KLH71517; WQ66_10010.
KLH80404; KLH80404; WR19_05155.
KLH85298; KLH85298; WR04_12750.
KLH91008; KLH91008; WR18_20735.
KLH91755; KLH91755; WQ91_00585.
PATRICi48655060. VBIEscCol74806_2570.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY616598 Genomic DNA. Translation: AAZ80065.1.
EU897165 Genomic DNA. Translation: ACI79721.1.
EU897166 Genomic DNA. Translation: ACI79722.1.
EU897167 Genomic DNA. Translation: ACI79723.1.
EU897168 Genomic DNA. Translation: ACI79724.1.
EU897169 Genomic DNA. Translation: ACI79725.1.
CP009859 Genomic DNA. Translation: AIX64462.1.
CP009104 Genomic DNA. Translation: AIZ83649.1.
CP010315 Genomic DNA. Translation: AJE57134.1.
CP010876 Genomic DNA. Translation: AJO84602.1.
CP011416 Genomic DNA. Translation: AKH23280.1.
CP011113 Genomic DNA. Translation: ALB32662.1.
CP012625 Genomic DNA. Translation: ALD24180.1.
CP012631 Genomic DNA. Translation: ALD29298.1.
CP012633 Genomic DNA. Translation: ALD34313.1.
CP012635 Genomic DNA. Translation: ALD39017.1.
CP012869 Genomic DNA. Translation: ALI44087.1.
CP012870 Genomic DNA. Translation: ALI48485.1.
CP013025 Genomic DNA. Translation: ALL89369.1.
CP013112 Genomic DNA. Translation: ALN46645.1.
CP013048 Genomic DNA. Translation: ALQ58379.1.
CP013253 Genomic DNA. Translation: ALQ71755.1.
HE964769 Genomic DNA. Translation: CCJ45076.1.
CCCP010000007 Genomic DNA. Translation: CDP70404.1.
HG976952 Genomic DNA. Translation: CDU37595.1.
LN831040 Genomic DNA. Translation: CKG80751.1.
CXZO01000001 Genomic DNA. Translation: CTR27443.1.
CXZU01000001 Genomic DNA. Translation: CTR29219.1.
CYAQ01000010 Genomic DNA. Translation: CTS34529.1.
CYAV01000018 Genomic DNA. Translation: CTS87771.1.
CYBM01000016 Genomic DNA. Translation: CTT99489.1.
CYBJ01000030 Genomic DNA. Translation: CTT99552.1.
CYCH01000004 Genomic DNA. Translation: CTU71773.1.
CYBW01000020 Genomic DNA. Translation: CTU88514.1.
CYDH01000007 Genomic DNA. Translation: CTV28771.1.
CYDR01000001 Genomic DNA. Translation: CTV72161.1.
CYCK01000028 Genomic DNA. Translation: CTW08041.1.
CYDI01000020 Genomic DNA. Translation: CTW31077.1.
CYCX01000035 Genomic DNA. Translation: CTW57679.1.
CYFC01000001 Genomic DNA. Translation: CTX54881.1.
CYFJ01000001 Genomic DNA. Translation: CTX84384.1.
CYEC01000032 Genomic DNA. Translation: CTY17777.1.
CYFX01000006 Genomic DNA. Translation: CTZ21397.1.
CYGC01000004 Genomic DNA. Translation: CTZ48004.1.
CYGU01000002 Genomic DNA. Translation: CUA56380.1.
LN877770 Genomic DNA. Translation: CUQ97815.1.
JPQG01000003 Genomic DNA. Translation: KFD75417.1.
JPKH01000009 Genomic DNA. Translation: KGM70933.1.
JPKL01000018 Genomic DNA. Translation: KGM83109.1.
JPMZ01000007 Genomic DNA. Translation: KGM84502.1.
JUBW01000040 Genomic DNA. Translation: KHH07640.1.
JUCW01000017 Genomic DNA. Translation: KHI36316.1.
JUDH01000001 Genomic DNA. Translation: KHJ00055.1.
JUDN01000027 Genomic DNA. Translation: KHJ21501.1.
JWZF01000032 Genomic DNA. Translation: KIG81739.1.
JWZL01000025 Genomic DNA. Translation: KIH02970.1.
JWZR01000174 Genomic DNA. Translation: KIH33398.1.
JPPP01000011 Genomic DNA. Translation: KIQ46719.1.
JYEF01000051 Genomic DNA. Translation: KJH07250.1.
JZDZ01000126 Genomic DNA. Translation: KJW44396.1.
JZEA01000065 Genomic DNA. Translation: KJW66278.1.
LBDC01000001 Genomic DNA. Translation: KLD53853.1.
LDCS01000006 Genomic DNA. Translation: KLG37755.1.
LDCR01000013 Genomic DNA. Translation: KLG43662.1.
LDCV01000024 Genomic DNA. Translation: KLG52457.1.
LDCW01000019 Genomic DNA. Translation: KLG62418.1.
LDCX01000003 Genomic DNA. Translation: KLG69641.1.
LDCY01000030 Genomic DNA. Translation: KLG71549.1.
LDCZ01000007 Genomic DNA. Translation: KLG79650.1.
LDDB01000183 Genomic DNA. Translation: KLG80362.1.
LDDA01000027 Genomic DNA. Translation: KLG82878.1.
LDDC01000089 Genomic DNA. Translation: KLG86302.1.
LDDD01000090 Genomic DNA. Translation: KLG94753.1.
LDDF01000018 Genomic DNA. Translation: KLH06280.1.
LDDI01000023 Genomic DNA. Translation: KLH22930.1.
LDDJ01000022 Genomic DNA. Translation: KLH28606.1.
LDDK01000046 Genomic DNA. Translation: KLH33140.1.
LDDM01000027 Genomic DNA. Translation: KLH43310.1.
LDDN01000048 Genomic DNA. Translation: KLH48154.1.
LDDO01000046 Genomic DNA. Translation: KLH49912.1.
LDDP01000025 Genomic DNA. Translation: KLH59001.1.
LDDQ01000025 Genomic DNA. Translation: KLH67665.1.
LDDR01000020 Genomic DNA. Translation: KLH69516.1.
LDDV01000035 Genomic DNA. Translation: KLH85298.1.
LDDU01000002 Genomic DNA. Translation: KLH91755.1.
LEUF01000007 Genomic DNA. Translation: KLX58638.1.
LEUB01000031 Genomic DNA. Translation: KLX65751.1.
LEUK01000022 Genomic DNA. Translation: KLX82559.1.
LEUM01000017 Genomic DNA. Translation: KLX95874.1.
LEYN01000021 Genomic DNA. Translation: KME68869.1.
LGZN01000006 Genomic DNA. Translation: KNF72172.1.
LGZP01000006 Genomic DNA. Translation: KNF81631.1.
LHCQ01000021 Genomic DNA. Translation: KNY74216.1.
LHAT01000031 Genomic DNA. Translation: KNZ98567.1.
LFZH01000009 Genomic DNA. Translation: KOA23761.1.
LFZJ01000005 Genomic DNA. Translation: KOA30084.1.
LFZI01000002 Genomic DNA. Translation: KOA36894.1.
LDVY01000017 Genomic DNA. Translation: KOR06166.1.
LDYI01000079 Genomic DNA. Translation: KPO13042.1.
LECL01000090 Genomic DNA. Translation: KPO36804.1.
LECN01000165 Genomic DNA. Translation: KPO45518.1.
LECM01000197 Genomic DNA. Translation: KPO49642.1.
LECH01000091 Genomic DNA. Translation: KPO73077.1.
LECJ01000085 Genomic DNA. Translation: KPO83416.1.
LECK01000129 Genomic DNA. Translation: KPO84200.1.
LEAA01000218 Genomic DNA. Translation: KPO90618.1.
LDZZ01000135 Genomic DNA. Translation: KPO93866.1.
LEAB01000132 Genomic DNA. Translation: KPP02596.1.
LEAC01000126 Genomic DNA. Translation: KPP08672.1.
LEAD01000122 Genomic DNA. Translation: KPP14005.1.
LEAF01000122 Genomic DNA. Translation: KPP25568.1.
LEAE01000020 Genomic DNA. Translation: KPP27757.1.
LEAH01000091 Genomic DNA. Translation: KPP38209.1.
LEAJ01000002 Genomic DNA. Translation: KPP53169.1.
LJDY01000034 Genomic DNA. Translation: KPR33067.1.
LIQA01000009 Genomic DNA. Translation: KQC26171.1.
LIUW01000008 Genomic DNA. Translation: KQI76022.1.
LIUY01000008 Genomic DNA. Translation: KQI86412.1.
LIUZ01000003 Genomic DNA. Translation: KQI92247.1.
LIVB01000016 Genomic DNA. Translation: KQI96115.1.
LIVC01000057 Genomic DNA. Translation: KQJ03108.1.
LIVD01000008 Genomic DNA. Translation: KQJ10474.1.
LIVE01000012 Genomic DNA. Translation: KQJ16368.1.
LIVF01000017 Genomic DNA. Translation: KQJ18620.1.
LIVG01000015 Genomic DNA. Translation: KQJ24177.1.
LIVH01000018 Genomic DNA. Translation: KQJ29004.1.
LIVJ01000008 Genomic DNA. Translation: KQJ34030.1.
LIVK01000007 Genomic DNA. Translation: KQJ41981.1.
LIVI01000006 Genomic DNA. Translation: KQJ45025.1.
LIVL01000009 Genomic DNA. Translation: KQJ49246.1.
LJCG01000017 Genomic DNA. Translation: KQL79599.1.
RefSeqiWP_001295364.1. NZ_LNAE01000003.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4LUPX-ray1.20A/C3-92[»]
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi469008.ECD_02467.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAIX64462; AIX64462; ECONIH1_14995.
AIZ88154; AIZ88154; HW43_17270.
AJB52685; AJB52685; RR31_13730.
AJE57134; AJE57134; AC789_1c29100.
AJO84602; AJO84602; SY51_14730.
AKK43680; AKK43680; NMECO18_12810.
CCQ29977; CCQ29977; HUS2011_3099.
CDU37595; CDU37595; PGD_00662.
CDY60586; CDY60586; ECHMS174_02588.
CDZ21388; CDZ21388; ECRV308_02582.
CEE10906; CEE10906; BN1008_4328.
KFD75417; KFD75417; JD73_17235.
KGM70933; KGM70933; EL75_1074.
KGM74936; KGM74936; EL78_1101.
KGM83109; KGM83109; EL80_1087.
KGM84502; KGM84502; EL79_1085.
KGP55392; KGP55392; LS90_02815.
KHD43325; KHD43325; LS39_03900.
KHD55788; KHD55788; LS40_03000.
KHG91489; KHG91489; PU73_21575.
KHG95308; KHG95308; PU71_24440.
KHH07640; KHH07640; PU69_17775.
KHI36316; KHI36316; PU33_05105.
KHJ00055; KHJ00055; PU15_00545.
KHJ21501; KHJ21501; PU06_05530.
KIG54660; KIG54660; PU53_06735.
KIG81739; KIG81739; PU38_07870.
KIH02970; KIH02970; PU21_16955.
KIH33398; KIH33398; PD07_25345.
KIQ46719; KIQ46719; IY32_09680.
KIY29209; KIY29209; TB57_07980.
KIZ12372; KIZ12372; UC39_03835.
KIZ61969; KIZ61969; UH28_09040.
KIZ67127; KIZ67127; UH34_03425.
KIZ69586; KIZ69586; UH31_06785.
KIZ74441; KIZ74441; UH35_08490.
KIZ77653; KIZ77653; UH32_13465.
KIZ84913; KIZ84913; UH29_05090.
KIZ90641; KIZ90641; UH37_02035.
KIZ93061; KIZ93061; UH33_09950.
KIZ98188; KIZ98188; UH36_07645.
KJA01169; KJA01169; UH27_15885.
KJA04378; KJA04378; UH30_20610.
KJD63684; KJD63684; LT79_07520.
KJD69366; KJD69366; LP50_05285.
KJD79476; KJD79476; LR66_07485.
KJD81097; KJD81097; LR65_10550.
KJD82992; KJD82992; LR67_07520.
KJD92307; KJD92307; LV67_02495.
KJD94494; KJD94494; LV68_09650.
KJG95479; KJG95479; UC40_21155.
KJH01636; KJH01636; TS82_14725.
KJH07250; KJH07250; UC41_13475.
KJI07737; KJI07737; UO94_08330.
KJI11021; KJI11021; UO92_10685.
KJI27063; KJI27063; UO95_06445.
KJW36086; KJW36086; UN86_04925.
KJW44396; KJW44396; UN91_26310.
KJW66278; KJW66278; UN92_00960.
KJY11195; KJY11195; UC21_14160.
KLD48659; KLD48659; XB01_02350.
KLD53853; KLD53853; XB00_03910.
KLG30692; KLG30692; WQ65_14705.
KLG37755; KLG37755; WQ86_01785.
KLG43662; KLG43662; WQ92_07710.
KLG47427; KLG47427; WR16_04755.
KLG50578; KLG50578; WQ68_20345.
KLG52457; KLG52457; WQ74_14715.
KLG62418; KLG62418; WQ95_08795.
KLG69641; KLG69641; WR00_01610.
KLG71549; KLG71549; WR24_14050.
KLG79650; KLG79650; WR12_02660.
KLG80362; KLG80362; WQ77_26480.
KLG82878; KLG82878; WR01_09925.
KLG86302; KLG86302; WR05_25420.
KLG94753; KLG94753; WR03_24680.
KLH06280; KLH06280; WQ71_05340.
KLH13690; KLH13690; WR23_11285.
KLH16959; KLH16959; WQ72_12715.
KLH22930; KLH22930; WR13_13835.
KLH28606; KLH28606; WR17_08775.
KLH31556; KLH31556; WQ69_22535.
KLH33140; KLH33140; WQ96_17085.
KLH43310; KLH43310; WQ84_10735.
KLH48154; KLH48154; WQ99_17530.
KLH49912; KLH49912; WQ70_16305.
KLH59001; KLH59001; WQ64_10145.
KLH67665; KLH67665; WQ79_12095.
KLH69516; KLH69516; WQ73_10670.
KLH71517; KLH71517; WQ66_10010.
KLH80404; KLH80404; WR19_05155.
KLH85298; KLH85298; WR04_12750.
KLH91008; KLH91008; WR18_20735.
KLH91755; KLH91755; WQ91_00585.
PATRICi48655060. VBIEscCol74806_2570.

Phylogenomic databases

eggNOGiENOG4105EMN. Bacteria.
COG1595. LUCA.
HOGENOMiHOG000094755.
OMAiDAENYES.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR000838. RNA_pol_sigma70_ECF_CS.
IPR007627. RNA_pol_sigma70_r2.
IPR013249. RNA_pol_sigma70_r4_t2.
IPR014286. RNA_pol_sigma70_RpoE.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF04542. Sigma70_r2. 1 hit.
PF08281. Sigma70_r4_2. 1 hit.
[Graphical view]
SUPFAMiSSF88659. SSF88659. 1 hit.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02939. RpoE_Sigma70. 1 hit.
TIGR02937. sigma70-ECF. 1 hit.
PROSITEiPS01063. SIGMA70_ECF. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Complex mutation pattern in the design of a protoplast type L-form Escherichia coli."
    Siddiqui R.A., Heinze I., Platzer M.
    Submitted (APR-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: LW1655F+Imported.
  2. "A precise reconstruction of the emergence and constrained radiations of Escherichia coli O157 portrayed by backbone concatenomic analysis."
    Leopold S.R., Magrini V., Holt N.J., Shaikh N., Mardis E.R., Cagno J., Ogura Y., Iguchi A., Hayashi T., Mellmann A., Karch H., Besser T.E., Sawyer S.A., Whittam T.S., Tarr P.I.
    Proc. Natl. Acad. Sci. U.S.A. 106:8713-8718(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: 493/89Imported, 86-24Imported, 87-14Imported, TB182AImported and TW14359Imported.
  3. "Identification of avian pathogenic Escherichia coli serogroup O78 genes associated with pathogenesis in poultry."
    Dziva F., Hauser H., Connor T., Van Diemen P.M., Prescott G., Langridge G.C., Eckert S., Chaudhuri R.R., Ewers C., Mellata M., Curtiss III R., Dougan G., Wieler L., Thomson N.R., Pickard D.J., Stevens M.P.
    Submitted (JUL-2012) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  4. Lim C.-J.
    Submitted (JUL-2012) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: IMT2125Imported.
  5. "Sequencing and functional annotation of avian pathogenic Escherichia coli serogroup O78 strains reveal the evolution of E. coli lineages pathogenic for poultry via distinct mechanisms."
    Dziva F., Hauser H., Connor T.R., van Diemen P.M., Prescott G., Langridge G.C., Eckert S., Chaudhuri R.R., Ewers C., Mellata M., Mukhopadhyay S., Curtiss R., Dougan G., Wieler L.H., Thomson N.R., Pickard D.J., Stevens M.P.
    Infect. Immun. 81:838-849(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: IMT2125Imported.
  6. "Structural basis for -10 promoter element melting by environmentally induced sigma factors."
    Campagne S., Marsh M.E., Capitani G., Vorholt J.A., Allain F.H.
    Nat. Struct. Mol. Biol. 21:269-276(2014) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (1.20 ANGSTROMS) OF 3-92.
  7. "Single-molecule sequencing to track plasmid diversity of hospital-associated carbapenemase-producing Enterobacteriaceae."
    NISC Comparative Sequencing Program
    Conlan S., Thomas P.J., Deming C., Park M., Lau A.F., Dekker J.P., Snitkin E.S., Clark T.A., Luong K., Song Y., Tsai Y.C., Boitano M., Dayal J., Brooks S.Y., Schmidt B., Young A.C., Thomas J.W., Bouffard G.G.
    , Blakesley R.W., Mullikin J.C., Korlach J., Henderson D.K., Frank K.M., Palmore T.N., Segre J.A.
    Sci. Transl. Med. 6:254RA126-254RA126(2014) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ECONIH1Imported.
  8. "Genome sequence of four bovine mastitis-causing Escherichia coli strains."
    Kempf F., Loux V., Germon P.
    Submitted (MAR-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: D6-117.07Imported and D6-117_07.11Imported.
  9. "Genome sequence of four bovine mastitis-causing Escherichia coli strains."
    Kempf F., Loux V., Germon P.
    Submitted (MAY-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: D6-117_07.11Imported.
  10. "Comparative Genomic Analysis of an Enterotoxigenic E. coli O157 Lineage from Australian Pigs."
    Wyrsch E., Roy Chowdhury P., Abraham S., Santos J., Darling A., Charles I., Chapman T., Djordjevic S.
    Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: O157 SvETECImported.
  11. "Complete sequence of probiotic Symbioflor2 E. coli G3/10 and draft sequences of Symbioflor2 strains G1/2, G4/9, G5, G6/7 and G8."
    Zschuettig A., Auerbach C., Meltke S., Eichhorn C., Brandt M., Blom J., Goesmann A., Jarek M., Scharfe M., Zimmermann K., Wassenaar T.M., Gunzer F.
    Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: G8Imported.
  12. "Complete sequence of probiotic Symbioflor2 E. coli strain G3/10 and draft sequences of Symbioflor2 strains G1/2, G4/9, G5, G6/7 and G8."
    Zschuettig A., Auerbach C., Meltke S., Eichhorn C., Brandt M., Blom J., Goesmann A., Jarek M., Scharfe M., Zimmermann K., Wassenaar T.M., Gunzer F.
    Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: G1/2Imported and G6/7Imported.
  13. "Prevalence of subtilase cytotoxin-encoding subAB variants among Shiga toxin-producing Escherichia coli strains isolated from wild ruminants and sheep differs from that of cattle and pigs and is predominated by the new allelic variant subAB2-2."
    Nuesch-Inderbinen M.T., Funk J., Cernela N., Tasara T., Klumpp J., Schmidt H., Stephan R.
    Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 48Imported.
  14. "Whole-genome sequencing effectively predicts antimicrobial resistance phenotypes of E. coli."
    Tyson G.H., McDermott P.F., Li C., Tadesse D.A., Mukherjee S., Bodeis-Jones S., Kabera C., Gaines S.A., Loneragan G.H., Edrington T.S., Torrence M., Harhay D.M., Zhao S.
    Submitted (NOV-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CVM N33429PSImported, CVM N33561PSImported, CVM N33707PSImported, CVM N33825PSImported, CVM N34352PSImported, CVM N34577PSImported and CVM N38795PSImported.
  15. "Genome sequencing and comparative genomics provides insights on the evolutionary dynamics and pathogenic potential of different H-serotypes of Shiga toxin-producing Escherichia coli O104."
    Yan X., Fratamico P.M., Bono J.L., Baranzoni G.M., Chen C.Y.
    BMC Microbiol. 15:83-83(2015) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: RM9387Imported.
  16. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 03-2832Imported, 03-4064Imported, 03-6430Imported, 05-6545Imported, 09-0523Imported, 09-0525Imported, 11-3088Imported, 1935Imported, AW1.3Imported, CO6CE2940Imported, CO6CE900Imported, E0122Imported, PARC447Imported, PARC449Imported and PARC450Imported.
  17. "Complete Genome Sequence of Enteroinvasive Escherichia coli O96:H19 Associated with a Severe Foodborne Outbreak."
    Pettengill E.A., Hoffmann M., Binet R., Roberts R.J., Payne J., Allard M., Michelacci V., Minelli F., Morabito S.
    Genome Announc. 3:e00883-15(2015) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: CFSAN029787Imported.
  18. "Complete Genome Sequences of Four Escherichia coli ST95 Isolates from Bloodstream Infections."
    Stephens C.M., Skerker J.M., Sekhon M.S., Arkin A.P., Riley L.W.
    Genome Announc. 3:e01241-15(2015) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: SF-166Imported, SF-173Imported and SF-468Imported.
  19. "Complete Genome Sequences of an Escherichia coli Laboratory Strain and Trimethoprim-Resistant (TMP32XR) Mutant Strains."
    Mohan A., Bhosle A., Chandra N.
    Genome Announc. 3:e01434-15(2015) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: K-12Imported.
  20. "Complete Genome Sequences of Two Shiga Toxin-Producing Escherichia coli Strains from Serotypes O119:H4 and O165:H25."
    Lindsey R.L., Knipe K., Rowe L., Garcia-Toledo L., Loparev V., Juieng P., Trees E., Strockbine N., Stripling D., Gerner-Smidt P.
    Genome Announc. 3:e01496-15(2015) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: 2009C-3133Imported.
  21. "Complete Genome Sequence of a Carbapenem-Resistant Extraintestinal Pathogenic Escherichia coli Strain Belonging to the Sequence Type 131 H30R Subclade."
    Johnson T.J., Hargreaves M., Shaw K., Snippes P., Lynfield R., Aziz M., Price L.B.
    Genome Announc. 3:0-0(2015) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: MNCRE44Imported.
  22. "Genomic Avenue to Avian Colisepticemia."
    Huja S., Oren Y., Trost E., Brzuszkiewicz E., Biran D., Blom J., Goesmann A., Gottschalk G., Hacker J., Ron E.Z., Dobrindt U.
    MBio 6:e01681-14(2015)
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 789Imported.
  23. "Genome sequence of Escherichia coli strain D2-2."
    Olsen R.H., Bisgaard M., Christensen J.P., Christensen H., Thofner I., Pors S.E.
    Submitted (FEB-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: D2-2Imported.
  24. "Genome sequences of 11 non-O157 Shiga Toxin-Producing Escherichia coli strains."
    Gabrielsen C., Drablos F., Afset J.E.
    Submitted (FEB-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: St. Olav173Imported and St. Olav174Imported.
  25. Murphy D.
    Submitted (MAR-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: RR1Imported.
  26. Informatics Pathogen
    Submitted (MAR-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NCTC9001Imported.
  27. "Escherihia coli strain M17 whole genome sequence."
    Gorlova I.S., Kulchitskaya M.A., Pronova M.A., Golubeva N.A., Solovyeva I.V., Tochilina A.G., Belova I.V.
    Submitted (APR-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: M17Imported.
  28. "Whole genome shotgun sequencing of cultured foodborne pathogen."
    Timme R., Allard M.W., Strain E., Evans P.S., Toro M., Gonzalez-Escalona N., Brown E.
    Submitted (APR-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CFSAN026778Imported, CFSAN026779Imported, CFSAN026788Imported, CFSAN026789Imported, CFSAN026790Imported, CFSAN026791Imported, CFSAN026799Imported, CFSAN026801Imported, CFSAN026802Imported, CFSAN026812Imported, CFSAN026815Imported, CFSAN026816Imported, CFSAN026818Imported, CFSAN026826Imported, CFSAN026828Imported, CFSAN026830Imported, CFSAN026835Imported, CFSAN026836Imported, CFSAN026838Imported, CFSAN026839Imported, CFSAN026842Imported, CFSAN026844Imported and CFSAN026845Imported.
  29. "Comparative genomics of non-pseudomonal bacterial species colonizing pediatric cystic fibrosis patients."
    Ormerod K.L., Fraser J.A., Wainwright C., Hugenholtz P.
    Submitted (MAY-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C8Imported.
  30. "Whole genome shotgun sequencing of cultured foodborne pathogen."
    Timme R., Allard M.W., Strain E., Evans P.S., Brown E.
    Submitted (MAY-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CFSAN029787Imported.
  31. Wang D.B., Wang M.
    Submitted (MAY-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: CFSAN029787Imported.
  32. "Comparative genomics and characterization of hybrid Shigatoxigenic and enterotoxigenic Escherichia coli (STEC/ETEC) strains."
    Nyholm O., Halkilahti J., Wiklund G., Okeke U., Paulin L., Auvinen P., Haukka K., Siitonen A.
    Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: FE95160Imported and IH57218Imported.
  33. "Genetic Determinants of Heat Resistance in Escherichia coli."
    Mercer R.G., Gaenzle M.G., Zheng J.
    Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CO6CE1353Imported.
  34. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BIDMC101Imported, BIDMC106Imported, BIDMC112Imported, CHS199Imported and MGH121Imported.
  35. "Comparative genomics and characterization of hybrid Shigatoxigenic and enterotoxigenic Escherichia coli (STEC/ETEC) strains."
    Nyholm O., Halkilahti J., Wiklund G., Okeke U., Paulin L., Auvinen P., Haukka K., Siitonen A.
    Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: IH53473Imported.
  36. "Draft genome sequence of a pathogenic ST57 Escherichia coli from poultry carrying twelve acquired antibiotic resistance genes."
    Jones-Dias D., Manageiro V., Sampaio D.A., Vieira L., Canica M.
    Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: INSLA289Imported.
  37. "Genome sequences of 64 non-O157:H7 Shiga toxin-producing Escherichia coli strains."
    Gonzalez-Escalona N., Toro M., Timme R., Payne J.
    Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CFSAN026806Imported, CFSAN026817Imported and CFSAN026843Imported.
  38. "Characterization of Escherichia coli strains isolated from cattle and human in Tanzania."
    Kudirkiene E., Olsen J.E.
    Submitted (AUG-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 117Imported, 12Imported, 146Imported, 165Imported, 166Imported, 199Imported, 221Imported, 224Imported, 228Imported, 233Imported, 304Imported, 321Imported, 33Imported, 447Imported and 449Imported.
  39. "Complete DNA Sequence of Pseudomonas syringae pv. actinidiae, the Causal Agent of Kiwifruit Canker Disease."
    Rikkerink E.H.A., Fineran P.C.
    Submitted (AUG-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: 102606_aEPECImported, 200758_aEPECImported, 201350Imported, 201589_aEPECImported, 400654_aEPECImported, 403728Imported, 503028_aEPECImported, 503225_aEPECImported, 503320Imported, 503331Imported, 503459_aEPECImported, 504888_aEPECImported, 702328Imported, 702745_aEPECImported, 702898_aEPECImported, 702971Imported, G100788-1AImported, G500297-1Imported and G500830Imported.
  40. "Whole genome sequencing of ExPEC causing fatal pneumonia in pig farm in Changchun, China."
    Kong L.
    Submitted (AUG-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: SLPEImported.
  41. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: MC1061Imported.
  42. "Complete genome sequences of four Escherichia coli ST95 isolates from bloodstream infections."
    Stephens C.M., Skerker J., Sekhon M., Arkin A., Riley L.W.
    Submitted (SEP-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: SF-088Imported.
  43. "Prevalence of NDMs in South Africa."
    Osei Sekyere J., Govinden U., Essack S., Haldorsen B., Samuelsen O., Aasnaes B., Sundsfjord A.
    Submitted (SEP-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ST167:947385799Imported.
  44. "Complete genome of an avian Extra-Instestinal Pathogenic Escherichia coli strain serotype O7:HNT."
    Maluta R.P., Nicholson B., Logue C.M., Nolan L.K., Rojas T.C., Dias da Silveira W.
    Submitted (OCT-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: RS76Imported.
  45. "Escherichia coli strain YD786, complete genome."
    Guo Q., McElheny C.L., Cooper V.S., Stoesser N., Doi Y.
    Submitted (NOV-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: YD786Imported.
  46. "The Genome Sequence of Escherichia coli CQSW20."
    Zhu J., Hu Z., Shang W., Yang J., Hu Q., Liu H., Xiong K., Chen Z., Li S., Lu S., Tan Y., Hu F., Rao X.
    Submitted (NOV-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: CQSW20Imported.

Entry informationi

Entry nameiQ0P6M2_ECOLX
AccessioniPrimary (citable) accession number: Q0P6M2
Secondary accession number(s): A0A0J3VU61
Entry historyi
Integrated into UniProtKB/TrEMBL: September 19, 2006
Last sequence update: September 19, 2006
Last modified: April 13, 2016
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.