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Q0P3L2 (IF1C_OSTTA) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 44. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Translation initiation factor IF-1, chloroplastic
Gene names
Name:infA
Ordered Locus Names:OtCpg00400
Encoded onPlastid; Chloroplast
OrganismOstreococcus tauri [Complete proteome]
Taxonomic identifier70448 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeChlorophytaMamiellophyceaeMamiellalesOstreococcus

Protein attributes

Sequence length78 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

No specific function has so far been attributed to this initiation factor; however, it seems to stimulate more or less all the activities of the other two initiation factors, IF-2 and IF-3 By similarity. HAMAP-Rule MF_00075

Subcellular location

Plastidchloroplast HAMAP-Rule MF_00075.

Sequence similarities

Belongs to the IF-1 family.

Contains 1 S1-like domain.

Ontologies

Keywords
   Biological processProtein biosynthesis
   Cellular componentChloroplast
Plastid
   Molecular functionInitiation factor
   Technical termComplete proteome
Gene Ontology (GO)
   Cellular_componentchloroplast

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functiontranslation initiation factor activity

Inferred from electronic annotation. Source: UniProtKB-HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 7878Translation initiation factor IF-1, chloroplastic HAMAP-Rule MF_00075
PRO_0000275395

Regions

Domain1 – 7373S1-like

Sequences

Sequence LengthMass (Da)Tools
Q0P3L2 [UniParc].

Last modified September 19, 2006. Version 1.
Checksum: DF2BF2FFBA2F7B56

FASTA788,971
        10         20         30         40         50         60 
MASNRELIEM EGVVVESLPN AMFQVELENG FQVLAHISGK IRRNSIKILL GDRVTVELTP 

        70 
YDLTKGRIIY RLRKDRTQ 

« Hide

References

[1]"The complete chloroplast and mitochondrial DNA sequence of Ostreococcus tauri: organelle genomes of the smallest eukaryote are examples of compaction."
Robbens S., Derelle E., Ferraz C., Wuyts J., Moreau H., Van de Peer Y.
Mol. Biol. Evol. 24:956-968(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: OTTH0595.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CR954199 Genomic DNA. Translation: CAL36365.1.
RefSeqYP_717243.1. NC_008289.1.

3D structure databases

ProteinModelPortalQ0P3L2.
SMRQ0P3L2. Positions 8-73.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING70448.Q0P3L2.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4238827.
KEGGota:OstapCp40.

Phylogenomic databases

eggNOGCOG0361.
HOGENOMHOG000221323.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
HAMAPMF_00075. IF_1.
InterProIPR012340. NA-bd_OB-fold.
IPR022967. RNA-binding_domain_S1.
IPR006196. RNA-binding_domain_S1_IF1.
IPR004368. TIF_IF1.
[Graphical view]
PfamPF01176. eIF-1a. 1 hit.
[Graphical view]
SMARTSM00316. S1. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR00008. infA. 1 hit.
PROSITEPS50832. S1_IF1_TYPE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameIF1C_OSTTA
AccessionPrimary (citable) accession number: Q0P3L2
Entry history
Integrated into UniProtKB/Swiss-Prot: February 6, 2007
Last sequence update: September 19, 2006
Last modified: May 14, 2014
This is version 44 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Translation initiation factors

List of translation initiation factor entries