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Q0P3L2

- IF1C_OSTTA

UniProt

Q0P3L2 - IF1C_OSTTA

Protein

Translation initiation factor IF-1, chloroplastic

Gene

infA

Organism
Ostreococcus tauri
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
  1. Functioni

    No specific function has so far been attributed to this initiation factor; however, it seems to stimulate more or less all the activities of the other two initiation factors, IF-2 and IF-3.UniRule annotation

    GO - Molecular functioni

    1. translation initiation factor activity Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Initiation factor

    Keywords - Biological processi

    Protein biosynthesis

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Translation initiation factor IF-1, chloroplasticUniRule annotation
    Gene namesi
    Name:infAUniRule annotation
    Ordered Locus Names:OtCpg00400
    Encoded oniPlastid; Chloroplast
    OrganismiOstreococcus tauri
    Taxonomic identifieri70448 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeChlorophytaMamiellophyceaeMamiellalesOstreococcus
    ProteomesiUP000009170: Chloroplast

    Subcellular locationi

    GO - Cellular componenti

    1. chloroplast Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Chloroplast, Plastid

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 7878Translation initiation factor IF-1, chloroplasticPRO_0000275395Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi70448.Q0P3L2.

    Structurei

    3D structure databases

    ProteinModelPortaliQ0P3L2.
    SMRiQ0P3L2. Positions 8-73.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini1 – 7373S1-likeUniRule annotationAdd
    BLAST

    Sequence similaritiesi

    Belongs to the IF-1 family.UniRule annotation
    Contains 1 S1-like domain.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0361.
    HOGENOMiHOG000221323.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    HAMAPiMF_00075. IF_1.
    InterProiIPR012340. NA-bd_OB-fold.
    IPR022967. RNA-binding_domain_S1.
    IPR006196. RNA-binding_domain_S1_IF1.
    IPR004368. TIF_IF1.
    [Graphical view]
    PfamiPF01176. eIF-1a. 1 hit.
    [Graphical view]
    SMARTiSM00316. S1. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR00008. infA. 1 hit.
    PROSITEiPS50832. S1_IF1_TYPE. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q0P3L2-1 [UniParc]FASTAAdd to Basket

    « Hide

    MASNRELIEM EGVVVESLPN AMFQVELENG FQVLAHISGK IRRNSIKILL   50
    GDRVTVELTP YDLTKGRIIY RLRKDRTQ 78
    Length:78
    Mass (Da):8,971
    Last modified:September 19, 2006 - v1
    Checksum:iDF2BF2FFBA2F7B56
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CR954199 Genomic DNA. Translation: CAL36365.1.
    RefSeqiYP_717243.1. NC_008289.1.

    Genome annotation databases

    GeneIDi4238827.
    KEGGiota:OstapCp40.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CR954199 Genomic DNA. Translation: CAL36365.1 .
    RefSeqi YP_717243.1. NC_008289.1.

    3D structure databases

    ProteinModelPortali Q0P3L2.
    SMRi Q0P3L2. Positions 8-73.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 70448.Q0P3L2.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 4238827.
    KEGGi ota:OstapCp40.

    Phylogenomic databases

    eggNOGi COG0361.
    HOGENOMi HOG000221323.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    HAMAPi MF_00075. IF_1.
    InterProi IPR012340. NA-bd_OB-fold.
    IPR022967. RNA-binding_domain_S1.
    IPR006196. RNA-binding_domain_S1_IF1.
    IPR004368. TIF_IF1.
    [Graphical view ]
    Pfami PF01176. eIF-1a. 1 hit.
    [Graphical view ]
    SMARTi SM00316. S1. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR00008. infA. 1 hit.
    PROSITEi PS50832. S1_IF1_TYPE. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The complete chloroplast and mitochondrial DNA sequence of Ostreococcus tauri: organelle genomes of the smallest eukaryote are examples of compaction."
      Robbens S., Derelle E., Ferraz C., Wuyts J., Moreau H., Van de Peer Y.
      Mol. Biol. Evol. 24:956-968(2007) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: OTTH0595.

    Entry informationi

    Entry nameiIF1C_OSTTA
    AccessioniPrimary (citable) accession number: Q0P3L2
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: February 6, 2007
    Last sequence update: September 19, 2006
    Last modified: October 1, 2014
    This is version 45 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Translation initiation factors
      List of translation initiation factor entries
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3