Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Bowman-Birk type bran trypsin inhibitor

Gene

RBBI3.3

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sitei135 – 1362Reactive bond for trypsinBy similarity
Sitei201 – 2022Reactive bond for trypsinBy similarity

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

Protease inhibitor, Serine protease inhibitor

Protein family/group databases

MEROPSiI12.007.

Names & Taxonomyi

Protein namesi
Recommended name:
Bowman-Birk type bran trypsin inhibitor
Alternative name(s):
OSE727A
Protein RBBI3-3
RBTI
Gene namesi
Name:RBBI3.3
Ordered Locus Names:Os01g0124401, Os01g0124400, LOC_Os01g03360
ORF Names:P0037C04.19, P0044F08.1
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryza
Proteomesi
  • UP000059680 Componenti: Chromosome 1

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2222Sequence analysisAdd
BLAST
Propeptidei23 – 118961 PublicationPRO_0000003286Add
BLAST
Chaini119 – 251133Bowman-Birk type bran trypsin inhibitorPRO_0000003287Add
BLAST
Propeptidei252 – 2543PRO_0000003288

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Disulfide bondi125 ↔ 1851 Publication
Disulfide bondi126 ↔ 1431 Publication
Disulfide bondi152 ↔ 1591 Publication
Disulfide bondi156 ↔ 1721 Publication
Disulfide bondi193 ↔ 2481 Publication
Disulfide bondi194 ↔ 2091 Publication
Disulfide bondi199 ↔ 2071 Publication
Disulfide bondi216 ↔ 2231 Publication
Disulfide bondi220 ↔ 2361 Publication

Keywords - PTMi

Disulfide bond

Proteomic databases

PaxDbiQ0JR25.

Expressioni

Gene expression databases

ExpressionAtlasiQ0JR25. baseline and differential.
GenevisibleiQ0JR25. OS.

Structurei

Secondary structure

1
254
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi127 – 1315Combined sources
Beta strandi140 – 1434Combined sources
Beta strandi172 – 1798Combined sources
Turni203 – 2053Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2QN5X-ray3.00B119-251[»]
ProteinModelPortaliQ0JR25.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ0JR25.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati46 – 12075Add
BLAST
Repeati121 – 18767Add
BLAST
Repeati188 – 25164Add
BLAST

Sequence similaritiesi

Keywords - Domaini

Repeat, Signal

Phylogenomic databases

InParanoidiQ0JR25.
OMAiGPVCKPR.
OrthoDBiEOG09360N83.

Family and domain databases

CDDicd00023. BBI. 3 hits.
Gene3Di2.10.69.10. 3 hits.
InterProiIPR000877. Prot_inh_BBI.
[Graphical view]
PfamiPF00228. Bowman-Birk_leg. 4 hits.
[Graphical view]
SMARTiSM00269. BowB. 3 hits.
[Graphical view]
SUPFAMiSSF57247. SSF57247. 3 hits.
PROSITEiPS00281. BOWMAN_BIRK. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q0JR25-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSNTTMATST ILLFLLAGLA AAHGDGDTTI RLPSDGAKAS RPRAAKPWDC
60 70 80 90 100
CDNIEISRLM IYPPLYRCND EVKQCAAACK ECVEAPGGDF NGGAFVCSDW
110 120 130 140 150
FSTVDPGPKC TAALDGLSME RPWKCCDNIK RLPTKPDPPQ WRCNDELEPS
160 170 180 190 200
QCTAACKSCR EAPGPFPGKL ICEDIYWGAD PGPFCTPRPW GDCCDKAFCN
210 220 230 240 250
KMNPPTCRCM DEVKECADAC KDCQRVESSE PPRYVCKDRF TGHPGPVCKP

RAEN
Length:254
Mass (Da):27,790
Last modified:July 10, 2007 - v2
Checksum:i32630D7DE579C1E8
GO

Sequence cautioni

The sequence AAB68026 differs from that shown. Reason: Erroneous initiation. Curated
The sequence AAD10378 differs from that shown.Chimeric cDNA. Its N-terminal part is derived from the gene LOC_Os01g03390, which coded for an RBBI2.3 protein.Curated
The sequence BAD52869 differs from that shown. Reason: Erroneous gene model prediction. Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti121 – 1211R → K in AAB68026 (Ref. 6) Curated
Sequence conflicti121 – 1211R → K in AAD10378 (Ref. 6) Curated
Sequence conflicti130 – 1301K → E in AAB68026 (Ref. 6) Curated
Sequence conflicti130 – 1301K → E in AAD10378 (Ref. 6) Curated
Sequence conflicti136 – 1372PD → TN in AAB68026 (Ref. 6) Curated
Sequence conflicti136 – 1372PD → TN in AAD10378 (Ref. 6) Curated
Sequence conflicti189 – 1891P → T in AAB68026 (Ref. 6) Curated
Sequence conflicti189 – 1891P → T in AAD10378 (Ref. 6) Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB098712 mRNA. Translation: BAC78439.1.
AP002909 Genomic DNA. Translation: BAB21173.1.
AP003233 Genomic DNA. Translation: BAD52869.1. Sequence problems.
AP008207 Genomic DNA. Translation: BAH90883.1.
AP014957 Genomic DNA. Translation: BAS70158.1.
U57640 mRNA. Translation: AAD10378.1. Sequence problems.
U76004 mRNA. Translation: AAB68026.1. Different initiation.
PIRiA27193. TIRZBR.
T04161.
RefSeqiXP_015622026.1. XM_015766540.1.
UniGeneiOs.74608.

Genome annotation databases

EnsemblPlantsiOS01T0124401-01; OS01T0124401-01; OS01G0124401.
GeneIDi9271230.
GrameneiOS01T0124401-01; OS01T0124401-01; OS01G0124401.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB098712 mRNA. Translation: BAC78439.1.
AP002909 Genomic DNA. Translation: BAB21173.1.
AP003233 Genomic DNA. Translation: BAD52869.1. Sequence problems.
AP008207 Genomic DNA. Translation: BAH90883.1.
AP014957 Genomic DNA. Translation: BAS70158.1.
U57640 mRNA. Translation: AAD10378.1. Sequence problems.
U76004 mRNA. Translation: AAB68026.1. Different initiation.
PIRiA27193. TIRZBR.
T04161.
RefSeqiXP_015622026.1. XM_015766540.1.
UniGeneiOs.74608.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2QN5X-ray3.00B119-251[»]
ProteinModelPortaliQ0JR25.
ModBaseiSearch...
MobiDBiSearch...

Protein family/group databases

MEROPSiI12.007.

Proteomic databases

PaxDbiQ0JR25.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiOS01T0124401-01; OS01T0124401-01; OS01G0124401.
GeneIDi9271230.
GrameneiOS01T0124401-01; OS01T0124401-01; OS01G0124401.

Phylogenomic databases

InParanoidiQ0JR25.
OMAiGPVCKPR.
OrthoDBiEOG09360N83.

Miscellaneous databases

EvolutionaryTraceiQ0JR25.

Gene expression databases

ExpressionAtlasiQ0JR25. baseline and differential.
GenevisibleiQ0JR25. OS.

Family and domain databases

CDDicd00023. BBI. 3 hits.
Gene3Di2.10.69.10. 3 hits.
InterProiIPR000877. Prot_inh_BBI.
[Graphical view]
PfamiPF00228. Bowman-Birk_leg. 4 hits.
[Graphical view]
SMARTiSM00269. BowB. 3 hits.
[Graphical view]
SUPFAMiSSF57247. SSF57247. 3 hits.
PROSITEiPS00281. BOWMAN_BIRK. 2 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiIBBR_ORYSJ
AccessioniPrimary (citable) accession number: Q0JR25
Secondary accession number(s): A0A0P0UXL8
, C7IWR7, P07084, P93432, Q5ZCA7, Q7XZC9, Q9AWV9, Q9M3W2, Q9SAS2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 10, 2007
Last sequence update: July 10, 2007
Last modified: September 7, 2016
This is version 63 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.