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Q0JMD4

- P2C03_ORYSJ

UniProt

Q0JMD4 - P2C03_ORYSJ

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Protein

Probable protein phosphatase 2C 3

Gene

Os01g0513100

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli

Functioni

Catalytic activityi

[a protein]-serine/threonine phosphate + H2O = [a protein]-serine/threonine + phosphate.

Cofactori

Mg2+By similarity, Mn2+By similarityNote: Binds 2 magnesium or manganese ions per subunit.By similarity

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi129 – 1291Manganese 1By similarity
Metal bindingi129 – 1291Manganese 2By similarity
Metal bindingi130 – 1301Manganese 1; via carbonyl oxygenBy similarity
Metal bindingi305 – 3051Manganese 2By similarity
Metal bindingi344 – 3441Manganese 2By similarity

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW
  2. phosphoprotein phosphatase activity Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Hydrolase, Protein phosphatase

Keywords - Ligandi

Magnesium, Manganese, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Probable protein phosphatase 2C 3 (EC:3.1.3.16)
Short name:
OsPP2C03
Gene namesi
Ordered Locus Names:Os01g0513100, LOC_Os01g32964
ORF Names:OsJ_001929, OSJNBa0054L14.32, P0504D03.18
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
ProteomesiUP000000763: Chromosome 1

Organism-specific databases

GrameneiQ0JMD4.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 485485Probable protein phosphatase 2C 3PRO_0000363249Add
BLAST

Structurei

3D structure databases

ProteinModelPortaliQ0JMD4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini96 – 346251PP2C-likeAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi14 – 185Poly-His
Compositional biasi63 – 686Poly-Gly
Compositional biasi451 – 4555Poly-Ser

Sequence similaritiesi

Belongs to the PP2C family.Curated
Contains 1 PP2C-like domain.Curated

Phylogenomic databases

eggNOGiCOG0631.
HOGENOMiHOG000240114.
InParanoidiQ0JMD4.

Family and domain databases

Gene3Di3.60.40.10. 1 hit.
InterProiIPR001932. PP2C-like_dom.
IPR015655. Protein_Pase_2C.
[Graphical view]
PANTHERiPTHR13832. PTHR13832. 1 hit.
PfamiPF00481. PP2C. 1 hit.
[Graphical view]
SMARTiSM00331. PP2C_SIG. 1 hit.
SM00332. PP2Cc. 1 hit.
[Graphical view]
SUPFAMiSSF81606. SSF81606. 1 hit.

Sequencei

Sequence statusi: Complete.

Q0JMD4-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSSPSPSSEA AAAHHHHHQR RQHAGAAGGS GLVPLAALIK EEARAERPMG
60 70 80 90 100
SGSRICARDE EDGGGGGGAE GGRRWRRPLL RYGCAAQSKK GEDFFLLRTD
110 120 130 140 150
CARPSTSSSS SSSLASSPPH TFAVFAVLDG HNGNAAAIYT RDNLLNHVLS
160 170 180 190 200
AMPRGLSREE WLHALPRALV AGFVKTDKEF QHKGQTSGTT ATFVIIDGWT
210 220 230 240 250
ITVASVGDSR CILDAQGGAV SLLTVDHRLE ENVEERERVT ASGGEVGRLS
260 270 280 290 300
VVGGAEIGPL RCWPGGLCLS RSIGDIDVGE FIVPVPYVKQ VKLSNAGGRL
310 320 330 340 350
IIASDGIWDA LSSEAAAKCC RGLPAELAAK QVVKEALRTR GLKDDTTCIV
360 370 380 390 400
VDMIPPDQTI RHPSPPKKIN KLKSLIFRKK TKDHPNKLTK QLSAAGMVEE
410 420 430 440 450
LFEEGSAMLS ERLGNDSSGR RTSSSLFTCA ICQVDLEPSE GISVHAGSIF
460 470 480
SSSSSKPWEG PFLCSDCRDK KDAMEGKRPS GVKVL
Length:485
Mass (Da):51,616
Last modified:February 10, 2009 - v2
Checksum:iCFA42E401AB047A1
GO

Sequence cautioni

The sequence BAD73079.1 differs from that shown. Reason: Erroneous gene model prediction. Curated
The sequence BAD73271.1 differs from that shown. Reason: Erroneous gene model prediction. Curated
The sequence BAF05094.2 differs from that shown. Reason: Erroneous gene model prediction. Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti350 – 3501V → A in AK059183. (PubMed:12869764)Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP002970 Genomic DNA. Translation: BAD73079.1. Sequence problems.
AP003213 Genomic DNA. Translation: BAD73271.1. Sequence problems.
AP008207 Genomic DNA. Translation: BAF05094.2. Sequence problems.
CM000138 Genomic DNA. No translation available.
AK059183 mRNA. No translation available.
RefSeqiNP_001043180.2. NM_001049715.1.
UniGeneiOs.37337.

Genome annotation databases

GeneIDi4323983.
KEGGiosa:4323983.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP002970 Genomic DNA. Translation: BAD73079.1 . Sequence problems.
AP003213 Genomic DNA. Translation: BAD73271.1 . Sequence problems.
AP008207 Genomic DNA. Translation: BAF05094.2 . Sequence problems.
CM000138 Genomic DNA. No translation available.
AK059183 mRNA. No translation available.
RefSeqi NP_001043180.2. NM_001049715.1.
UniGenei Os.37337.

3D structure databases

ProteinModelPortali Q0JMD4.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 4323983.
KEGGi osa:4323983.

Organism-specific databases

Gramenei Q0JMD4.

Phylogenomic databases

eggNOGi COG0631.
HOGENOMi HOG000240114.
InParanoidi Q0JMD4.

Family and domain databases

Gene3Di 3.60.40.10. 1 hit.
InterProi IPR001932. PP2C-like_dom.
IPR015655. Protein_Pase_2C.
[Graphical view ]
PANTHERi PTHR13832. PTHR13832. 1 hit.
Pfami PF00481. PP2C. 1 hit.
[Graphical view ]
SMARTi SM00331. PP2C_SIG. 1 hit.
SM00332. PP2Cc. 1 hit.
[Graphical view ]
SUPFAMi SSF81606. SSF81606. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "The genome sequence and structure of rice chromosome 1."
    Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y., Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H., Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.
    , Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.
    Nature 420:312-316(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  3. "The rice annotation project database (RAP-DB): 2008 update."
    The rice annotation project (RAP)
    Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: cv. Nipponbare.
  4. "The genomes of Oryza sativa: a history of duplications."
    Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.
    , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.
    PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  5. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
    The rice full-length cDNA consortium
    Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 334-485.
    Strain: cv. Nipponbare.
  6. "Genome-wide and expression analysis of protein phosphatase 2C in rice and Arabidopsis."
    Xue T., Wang D., Zhang S., Ehlting J., Ni F., Jacab S., Zheng C., Zhong Y.
    BMC Genomics 9:550-550(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY, NOMENCLATURE.

Entry informationi

Entry nameiP2C03_ORYSJ
AccessioniPrimary (citable) accession number: Q0JMD4
Secondary accession number(s): A2ZTQ7, Q5QMT7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 10, 2009
Last sequence update: February 10, 2009
Last modified: November 26, 2014
This is version 51 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3