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Protein

Probable protein phosphatase 2C 6

Gene

Os01g0583100

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Catalytic activityi

[a protein]-serine/threonine phosphate + H2O = [a protein]-serine/threonine + phosphate.

Cofactori

Mg2+By similarity, Mn2+By similarityNote: Binds 2 magnesium or manganese ions per subunit.By similarity

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi205Manganese 1By similarity1
Metal bindingi205Manganese 2By similarity1
Metal bindingi206Manganese 1; via carbonyl oxygenBy similarity1
Metal bindingi386Manganese 2By similarity1
Metal bindingi448Manganese 2By similarity1

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

Hydrolase, Protein phosphatase

Keywords - Ligandi

Magnesium, Manganese, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Probable protein phosphatase 2C 6 (EC:3.1.3.16)
Short name:
OsPP2C06
Gene namesi
Ordered Locus Names:Os01g0583100, LOC_Os01g40094
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryza
Proteomesi
  • UP000059680 Componenti: Chromosome 1

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003632521 – 467Probable protein phosphatase 2C 6Add BLAST467

Proteomic databases

PaxDbiQ0JLP9.

Expressioni

Gene expression databases

GenevisibleiQ0JLP9. OS.

Interactioni

Protein-protein interaction databases

STRINGi39947.LOC_Os01g40094.1.

Structurei

Secondary structure

1467
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi142 – 144Combined sources3
Beta strandi149 – 155Combined sources7
Beta strandi159 – 161Combined sources3
Beta strandi164 – 176Combined sources13
Helixi178 – 181Combined sources4
Turni191 – 193Combined sources3
Beta strandi195 – 210Combined sources16
Helixi211 – 234Combined sources24
Helixi239 – 241Combined sources3
Helixi245 – 264Combined sources20
Beta strandi280 – 288Combined sources9
Beta strandi290 – 300Combined sources11
Beta strandi302 – 307Combined sources6
Beta strandi310 – 313Combined sources4
Helixi323 – 331Combined sources9
Beta strandi336 – 344Combined sources9
Turni345 – 347Combined sources3
Helixi357 – 359Combined sources3
Turni360 – 362Combined sources3
Beta strandi368 – 373Combined sources6
Beta strandi378 – 384Combined sources7
Helixi386 – 389Combined sources4
Helixi394 – 411Combined sources18
Helixi428 – 443Combined sources16
Beta strandi450 – 456Combined sources7

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4OICX-ray2.00B1-467[»]
ProteinModelPortaliQ0JLP9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini149 – 457PPM-type phosphatasePROSITE-ProRule annotationAdd BLAST309

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi5 – 138Ala-richAdd BLAST134

Sequence similaritiesi

Belongs to the PP2C family.Curated
Contains 1 PPM-type phosphatase domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG0698. Eukaryota.
COG0631. LUCA.
HOGENOMiHOG000233896.
InParanoidiQ0JLP9.
KOiK14497.
OrthoDBiEOG09360DDO.

Family and domain databases

Gene3Di3.60.40.10. 1 hit.
InterProiIPR015655. PP2C.
IPR000222. PP2C_BS.
IPR001932. PPM-type_phosphatase_dom.
[Graphical view]
PANTHERiPTHR13832. PTHR13832. 2 hits.
PfamiPF00481. PP2C. 1 hit.
[Graphical view]
SMARTiSM00331. PP2C_SIG. 1 hit.
SM00332. PP2Cc. 1 hit.
[Graphical view]
SUPFAMiSSF81606. SSF81606. 1 hit.
PROSITEiPS01032. PPM_1. 1 hit.
PS51746. PPM_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q0JLP9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEDVAVAAAL APAPATAPVF SPAAAGLTLI AAAAADPIAA VVAGAMDGVV
60 70 80 90 100
TVPPVRTASA VEDDAVAPGR GEEGGEASAV GSPCSVTSDC SSVASADFEG
110 120 130 140 150
VGLGFFGAAA DGGAAMVFED SAASAATVEA EARVAAGARS VFAVECVPLW
160 170 180 190 200
GHKSICGRRP EMEDAVVAVS RFFDIPLWML TGNSVVDGLD PMSFRLPAHF
210 220 230 240 250
FGVYDGHGGA QVANYCRERL HAALVEELSR IEGSVSGANL GSVEFKKKWE
260 270 280 290 300
QAFVDCFSRV DEEVGGNASR GEAVAPETVG STAVVAVICS SHIIVANCGD
310 320 330 340 350
SRAVLCRGKQ PVPLSVDHKP NREDEYARIE AEGGKVIQWN GYRVFGVLAM
360 370 380 390 400
SRSIGDRYLK PWIIPVPEIT IVPRAKDDEC LVLASDGLWD VMSNEEVCDV
410 420 430 440 450
ARKRILLWHK KNGTNPASAP RSGDSSDPAA EAAAECLSKL ALQKGSKDNI
460
SVIVVDLKAH RKFKSKS
Length:467
Mass (Da):48,635
Last modified:October 3, 2006 - v1
Checksum:i50CB687EAB641C5B
GO

Sequence cautioni

The sequence BAF05329 differs from that shown. Reason: Erroneous gene model prediction.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008207 Genomic DNA. Translation: BAF05329.2. Sequence problems.
AP014957 Genomic DNA. No translation available.
AK242616 mRNA. No translation available.
RefSeqiXP_015621667.1. XM_015766181.1.
UniGeneiOs.5367.

Genome annotation databases

GeneIDi4324201.
KEGGiosa:4324201.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008207 Genomic DNA. Translation: BAF05329.2. Sequence problems.
AP014957 Genomic DNA. No translation available.
AK242616 mRNA. No translation available.
RefSeqiXP_015621667.1. XM_015766181.1.
UniGeneiOs.5367.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4OICX-ray2.00B1-467[»]
ProteinModelPortaliQ0JLP9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi39947.LOC_Os01g40094.1.

Proteomic databases

PaxDbiQ0JLP9.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi4324201.
KEGGiosa:4324201.

Phylogenomic databases

eggNOGiKOG0698. Eukaryota.
COG0631. LUCA.
HOGENOMiHOG000233896.
InParanoidiQ0JLP9.
KOiK14497.
OrthoDBiEOG09360DDO.

Gene expression databases

GenevisibleiQ0JLP9. OS.

Family and domain databases

Gene3Di3.60.40.10. 1 hit.
InterProiIPR015655. PP2C.
IPR000222. PP2C_BS.
IPR001932. PPM-type_phosphatase_dom.
[Graphical view]
PANTHERiPTHR13832. PTHR13832. 2 hits.
PfamiPF00481. PP2C. 1 hit.
[Graphical view]
SMARTiSM00331. PP2C_SIG. 1 hit.
SM00332. PP2Cc. 1 hit.
[Graphical view]
SUPFAMiSSF81606. SSF81606. 1 hit.
PROSITEiPS01032. PPM_1. 1 hit.
PS51746. PPM_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiP2C06_ORYSJ
AccessioniPrimary (citable) accession number: Q0JLP9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 10, 2009
Last sequence update: October 3, 2006
Last modified: October 5, 2016
This is version 72 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.