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Q0JKM9

- MAN1_ORYSJ

UniProt

Q0JKM9 - MAN1_ORYSJ

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Protein

Mannan endo-1,4-beta-mannosidase 1

Gene

MAN1

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at transcript leveli

Functioni

Catalytic activityi

Random hydrolysis of (1->4)-beta-D-mannosidic linkages in mannans, galactomannans and glucomannans.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei210 – 2101Proton donorBy similarity
Active sitei329 – 3291NucleophileBy similarity

GO - Molecular functioni

  1. mannan endo-1,4-beta-mannosidase activity Source: UniProtKB-EC

GO - Biological processi

  1. carbohydrate metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Glycosidase, Hydrolase

Protein family/group databases

CAZyiGH5. Glycoside Hydrolase Family 5.

Names & Taxonomyi

Protein namesi
Recommended name:
Mannan endo-1,4-beta-mannosidase 1 (EC:3.2.1.78)
Alternative name(s):
Beta-mannanase 1
Endo-beta-1,4-mannanase 1
OsMAN1
Gene namesi
Name:MAN1
Ordered Locus Names:Os01g0663300, LOC_Os01g47400
ORF Names:P0671D01.40
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
ProteomesiUP000000763: Chromosome 1

Organism-specific databases

GrameneiQ0JKM9.

Subcellular locationi

Secreted Curated

GO - Cellular componenti

  1. extracellular region Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2828Sequence AnalysisAdd
BLAST
Chaini29 – 432404Mannan endo-1,4-beta-mannosidase 1PRO_0000277482Add
BLAST

Expressioni

Tissue specificityi

Ubiquitous.1 Publication

Interactioni

Protein-protein interaction databases

STRINGi39947.LOC_Os01g47400.1.

Structurei

3D structure databases

ProteinModelPortaliQ0JKM9.
SMRiQ0JKM9. Positions 35-410.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiCOG3934.
HOGENOMiHOG000169952.
InParanoidiQ0JKM9.
OMAiESHAKIC.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR001547. Glyco_hydro_5.
IPR018087. Glyco_hydro_5_CS.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PfamiPF00150. Cellulase. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.
PROSITEiPS00659. GLYCOSYL_HYDROL_F5. 1 hit.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

This entry describes 2 isoformsi produced by alternative splicing. Align

Isoform 1 (identifier: Q0JKM9-1) [UniParc]FASTAAdd to Basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MRLLGAHRAA LLVLACVVVV VIHGLGEAEA LGGGGGFVRA QGTRFVLDGN
60 70 80 90 100
PYYANGFNAY WLMLLAADPS QRGKVSAALG EAAGHGLTVA RTWAFSDGGG
110 120 130 140 150
GNALQLSPGN YNENTFKGLD FVLSEARKYG IKVILSLVDN YDSFGGRKQY
160 170 180 190 200
VNWARAQGQG IGSDDEFFTN PVVKGFYKNH VKTVLTRKNT ITGVAYRDDP
210 220 230 240 250
TILAWELMNE PRCQSDLSGR TVQSWITEMA AHVKSIDRNH MLEVGLEGFY
260 270 280 290 300
GASSPSRIAA VNPSGYQLGT DFIANNQVPG IDFATVHSYP DQWLSGKDDQ
310 320 330 340 350
AQLGFMGRWL DAHIADAQAV LRKPLLIAEF GKSWKDPGYS SGQRDALYGT
360 370 380 390 400
VYAKIYESAR RGGATVGGLF WQLLVPGMDS YRDGYEVVFG ETPSTTGVIT
410 420 430
TNSRRLRFLS KAFARARQAQ PARGKGRHNG GK
Length:432
Mass (Da):46,875
Last modified:February 6, 2007 - v2
Checksum:i170FC7BF13EA51F3
GO
Isoform 2 (identifier: Q0JKM9-2) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     318-346: Missing.

Note: No experimental confirmation available.

Show »
Length:403
Mass (Da):43,674
Checksum:iC47F8DF4FFC576AA
GO

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei318 – 34629Missing in isoform 2. 1 PublicationVSP_023020Add
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP003284 Genomic DNA. Translation: BAB91747.1.
AP008207 Genomic DNA. Translation: BAF05699.1.
AK071667 mRNA. No translation available.
RefSeqiNP_001043785.1. NM_001050320.1. [Q0JKM9-2]
UniGeneiOs.10006.

Genome annotation databases

GeneIDi4327860.
KEGGiosa:4327860.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP003284 Genomic DNA. Translation: BAB91747.1 .
AP008207 Genomic DNA. Translation: BAF05699.1 .
AK071667 mRNA. No translation available.
RefSeqi NP_001043785.1. NM_001050320.1. [Q0JKM9-2 ]
UniGenei Os.10006.

3D structure databases

ProteinModelPortali Q0JKM9.
SMRi Q0JKM9. Positions 35-410.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 39947.LOC_Os01g47400.1.

Protein family/group databases

CAZyi GH5. Glycoside Hydrolase Family 5.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 4327860.
KEGGi osa:4327860.

Organism-specific databases

Gramenei Q0JKM9.

Phylogenomic databases

eggNOGi COG3934.
HOGENOMi HOG000169952.
InParanoidi Q0JKM9.
OMAi ESHAKIC.

Family and domain databases

Gene3Di 3.20.20.80. 1 hit.
InterProi IPR001547. Glyco_hydro_5.
IPR018087. Glyco_hydro_5_CS.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view ]
Pfami PF00150. Cellulase. 1 hit.
[Graphical view ]
SUPFAMi SSF51445. SSF51445. 1 hit.
PROSITEi PS00659. GLYCOSYL_HYDROL_F5. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "The genome sequence and structure of rice chromosome 1."
    Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y., Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H., Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.
    , Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.
    Nature 420:312-316(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  3. "The rice annotation project database (RAP-DB): 2008 update."
    The rice annotation project (RAP)
    Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: cv. Nipponbare.
  4. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
    The rice full-length cDNA consortium
    Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
    Strain: cv. Nipponbare.
  5. "The endo-beta-mannanase gene families in Arabidopsis, rice, and poplar."
    Yuan J.S., Yang X., Lai J., Lin H., Cheng Z.-M., Nonogaki H., Chen F.
    Funct. Integr. Genomics 7:1-16(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY, TISSUE SPECIFICITY.

Entry informationi

Entry nameiMAN1_ORYSJ
AccessioniPrimary (citable) accession number: Q0JKM9
Secondary accession number(s): Q8LR27
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 6, 2007
Last sequence update: February 6, 2007
Last modified: October 29, 2014
This is version 62 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  2. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3