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Q0JKM9

- MAN1_ORYSJ

UniProt

Q0JKM9 - MAN1_ORYSJ

Protein

Mannan endo-1,4-beta-mannosidase 1

Gene

MAN1

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 61 (01 Oct 2014)
      Sequence version 2 (06 Feb 2007)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    Random hydrolysis of (1->4)-beta-D-mannosidic linkages in mannans, galactomannans and glucomannans.

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei210 – 2101Proton donorBy similarity
    Active sitei329 – 3291NucleophileBy similarity

    GO - Molecular functioni

    1. mannan endo-1,4-beta-mannosidase activity Source: UniProtKB-EC

    GO - Biological processi

    1. carbohydrate metabolic process Source: InterPro

    Keywords - Molecular functioni

    Glycosidase, Hydrolase

    Protein family/group databases

    CAZyiGH5. Glycoside Hydrolase Family 5.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Mannan endo-1,4-beta-mannosidase 1 (EC:3.2.1.78)
    Alternative name(s):
    Beta-mannanase 1
    Endo-beta-1,4-mannanase 1
    OsMAN1
    Gene namesi
    Name:MAN1
    Ordered Locus Names:Os01g0663300, LOC_Os01g47400
    ORF Names:P0671D01.40
    OrganismiOryza sativa subsp. japonica (Rice)
    Taxonomic identifieri39947 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
    ProteomesiUP000000763: Chromosome 1

    Organism-specific databases

    GrameneiQ0JKM9.

    Subcellular locationi

    Secreted Curated

    GO - Cellular componenti

    1. extracellular region Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Secreted

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 2828Sequence AnalysisAdd
    BLAST
    Chaini29 – 432404Mannan endo-1,4-beta-mannosidase 1PRO_0000277482Add
    BLAST

    Expressioni

    Tissue specificityi

    Ubiquitous.1 Publication

    Interactioni

    Protein-protein interaction databases

    STRINGi39947.LOC_Os01g47400.1.

    Structurei

    3D structure databases

    ProteinModelPortaliQ0JKM9.
    SMRiQ0JKM9. Positions 35-410.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Keywords - Domaini

    Signal

    Phylogenomic databases

    eggNOGiCOG3934.
    HOGENOMiHOG000169952.
    OMAiESHAKIC.

    Family and domain databases

    Gene3Di3.20.20.80. 1 hit.
    InterProiIPR001547. Glyco_hydro_5.
    IPR018087. Glyco_hydro_5_CS.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view]
    PfamiPF00150. Cellulase. 1 hit.
    [Graphical view]
    SUPFAMiSSF51445. SSF51445. 1 hit.
    PROSITEiPS00659. GLYCOSYL_HYDROL_F5. 1 hit.
    [Graphical view]

    Sequences (2)i

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    This entry describes 2 isoformsi produced by alternative splicing. Align

    Isoform 1 (identifier: Q0JKM9-1) [UniParc]FASTAAdd to Basket

    This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

    « Hide

    MRLLGAHRAA LLVLACVVVV VIHGLGEAEA LGGGGGFVRA QGTRFVLDGN    50
    PYYANGFNAY WLMLLAADPS QRGKVSAALG EAAGHGLTVA RTWAFSDGGG 100
    GNALQLSPGN YNENTFKGLD FVLSEARKYG IKVILSLVDN YDSFGGRKQY 150
    VNWARAQGQG IGSDDEFFTN PVVKGFYKNH VKTVLTRKNT ITGVAYRDDP 200
    TILAWELMNE PRCQSDLSGR TVQSWITEMA AHVKSIDRNH MLEVGLEGFY 250
    GASSPSRIAA VNPSGYQLGT DFIANNQVPG IDFATVHSYP DQWLSGKDDQ 300
    AQLGFMGRWL DAHIADAQAV LRKPLLIAEF GKSWKDPGYS SGQRDALYGT 350
    VYAKIYESAR RGGATVGGLF WQLLVPGMDS YRDGYEVVFG ETPSTTGVIT 400
    TNSRRLRFLS KAFARARQAQ PARGKGRHNG GK 432
    Length:432
    Mass (Da):46,875
    Last modified:February 6, 2007 - v2
    Checksum:i170FC7BF13EA51F3
    GO
    Isoform 2 (identifier: Q0JKM9-2) [UniParc]FASTAAdd to Basket

    The sequence of this isoform differs from the canonical sequence as follows:
         318-346: Missing.

    Note: No experimental confirmation available.

    Show »
    Length:403
    Mass (Da):43,674
    Checksum:iC47F8DF4FFC576AA
    GO

    Alternative sequence

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Alternative sequencei318 – 34629Missing in isoform 2. 1 PublicationVSP_023020Add
    BLAST

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP003284 Genomic DNA. Translation: BAB91747.1.
    AP008207 Genomic DNA. Translation: BAF05699.1.
    AK071667 mRNA. No translation available.
    RefSeqiNP_001043785.1. NM_001050320.1. [Q0JKM9-2]
    UniGeneiOs.10006.

    Genome annotation databases

    GeneIDi4327860.
    KEGGiosa:4327860.

    Keywords - Coding sequence diversityi

    Alternative splicing

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP003284 Genomic DNA. Translation: BAB91747.1 .
    AP008207 Genomic DNA. Translation: BAF05699.1 .
    AK071667 mRNA. No translation available.
    RefSeqi NP_001043785.1. NM_001050320.1. [Q0JKM9-2 ]
    UniGenei Os.10006.

    3D structure databases

    ProteinModelPortali Q0JKM9.
    SMRi Q0JKM9. Positions 35-410.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 39947.LOC_Os01g47400.1.

    Protein family/group databases

    CAZyi GH5. Glycoside Hydrolase Family 5.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 4327860.
    KEGGi osa:4327860.

    Organism-specific databases

    Gramenei Q0JKM9.

    Phylogenomic databases

    eggNOGi COG3934.
    HOGENOMi HOG000169952.
    OMAi ESHAKIC.

    Family and domain databases

    Gene3Di 3.20.20.80. 1 hit.
    InterProi IPR001547. Glyco_hydro_5.
    IPR018087. Glyco_hydro_5_CS.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view ]
    Pfami PF00150. Cellulase. 1 hit.
    [Graphical view ]
    SUPFAMi SSF51445. SSF51445. 1 hit.
    PROSITEi PS00659. GLYCOSYL_HYDROL_F5. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The genome sequence and structure of rice chromosome 1."
      Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y., Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H., Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.
      , Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.
      Nature 420:312-316(2002) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    3. "The rice annotation project database (RAP-DB): 2008 update."
      The rice annotation project (RAP)
      Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENOME REANNOTATION.
      Strain: cv. Nipponbare.
    4. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
      The rice full-length cDNA consortium
      Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
      Strain: cv. Nipponbare.
    5. "The endo-beta-mannanase gene families in Arabidopsis, rice, and poplar."
      Yuan J.S., Yang X., Lai J., Lin H., Cheng Z.-M., Nonogaki H., Chen F.
      Funct. Integr. Genomics 7:1-16(2007) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENE FAMILY, TISSUE SPECIFICITY.

    Entry informationi

    Entry nameiMAN1_ORYSJ
    AccessioniPrimary (citable) accession number: Q0JKM9
    Secondary accession number(s): Q8LR27
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: February 6, 2007
    Last sequence update: February 6, 2007
    Last modified: October 1, 2014
    This is version 61 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Glycosyl hydrolases
      Classification of glycosyl hydrolase families and list of entries
    2. Oryza sativa (rice)
      Index of Oryza sativa entries and their corresponding gene designations
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3