Q0J952 (C3H32_ORYSJ) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Zinc finger CCCH domain-containing protein 32
Short name=OsC3H32

Gene names

Ordered Locus Names:	Os04g0671800, LOC_Os04g57600
ORF Names:	OsJ_015854, OSJNBb0004A17.5

Organism

Oryza sativa subsp. japonica (Rice) [Reference proteome]

Taxonomic identifier

39947 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Viridiplantae › Streptophyta › Streptophytina › Embryophyta › Tracheophyta › Euphyllophyta › Spermatophyta › Magnoliophyta › Liliopsida › commelinids › Poales › Poaceae › BEP clade › Ehrhartoideae › Oryzeae › Oryza › Oryza sativa

Protein attributes

Sequence length	711 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Sequence similarities

Contains 3 C3H1-type zinc fingers.

Ontologies

Keywords
Domain	Repeat Zinc-finger
Ligand	DNA-binding Metal-binding Zinc
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Molecular_function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW zinc ion binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 711	711	Zinc finger CCCH domain-containing protein 32		PRO_0000346827
Regions
	Zinc finger	31 – 60	30	C3H1-type 1
	Zinc finger	62 – 88	27	C3H1-type 2
	Zinc finger	112 – 139	28	C3H1-type 3
	Compositional bias	6 – 12	7	Poly-Ala
	Compositional bias	394 – 401	8	Poly-Arg
Experimental info
	Sequence conflict	687	1	N → D in AK070857. Ref.5

Sequences

	Sequence		Length	Mass (Da)
	Q0J952 [UniParc]. Last modified October 3, 2006. Version 1. Checksum: 1387FF902BD39D0B	FASTA	711	80,160
	10 20 30 40 50 60 MEADGAAAAA AAGEASTEAG ARPLAPEEEA LRRNTDCVYF LASPLTCKKG NECDFRHSDN 70 80 90 100 110 120 ARMNPRDCWY WLNSNCLNPK CPFRHPPIDG MFGAPTTGMP AVSSHYAPFN SGKQLVPCYY 130 140 150 160 170 180 FKKGNCLKGD RCAFYHGPQS VGNNPSEQVV KVSSLPLEQL QTQKNDLLGI KDSVQSTNSI 190 200 210 220 230 240 QHGAPITNER GKTAVDRSTV NSARTATVAI PVASNAMSCP KSEKVKSSTP AALKESFTTS 250 260 270 280 290 300 SGGDHPECYQ NHFPMDSDPV RDWNQSYEMP PADDLPQNSR EADELLGESS PGFDVLVDND 310 320 330 340 350 360 ADGAAYLHDE DFGGDMYPVE DYEYAPADFD VRAHHERERF NGMDEQDQMG HMYDGYERKR 370 380 390 400 410 420 RRSSERSMER PFHSERRFLQ RDRDRVEMDG SDLRHRLRRR RINESSLAIS PERNGEQRRR 430 440 450 460 470 480 DERYRERAHG HRSHRDHHQS SRGSTLSSRL QGRIKLPGRS PDRVDTRSEK ERDRRRLRDR 490 500 510 520 530 540 LSPVRRTEFQ GTRHREAGQH EEQTQRRSSE LALGSRNADG QHLTKDVPDS HNFPHRKNSR 550 560 570 580 590 600 DSSKANGSVE PEASLDFEGP KPLSVILQRK REAAWANGTS ACSPKQDKSA EVSHRQASLA 610 620 630 640 650 660 EAEKEGDNII SSDEYKSGSG DEEFRDEGHI PVEGHGQSSS HGDKLEAEDI IEVDPVENQD 670 680 690 700 710 ADNYDQREGE SYYEPIEGQD YKSDDENAYE DDDEEYDDDD DFARKVGVVF S

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Sequence and analysis of rice chromosome 4." Feng Q., Zhang Y., Hao P., Wang S., Fu G., Huang Y., Li Y., Zhu J., Liu Y., Hu X., Jia P., Zhang Y., Zhao Q., Ying K., Yu S., Tang Y., Weng Q., Zhang L. , Lu Y., Mu J., Lu Y., Zhang L.S., Yu Z., Fan D., Liu X., Lu T., Li C., Wu Y., Sun T., Lei H., Li T., Hu H., Guan J., Wu M., Zhang R., Zhou B., Chen Z., Chen L., Jin Z., Wang R., Yin H., Cai Z., Ren S., Lv G., Gu W., Zhu G., Tu Y., Jia J., Zhang Y., Chen J., Kang H., Chen X., Shao C., Sun Y., Hu Q., Zhang X., Zhang W., Wang L., Ding C., Sheng H., Gu J., Chen S., Ni L., Zhu F., Chen W., Lan L., Lai Y., Cheng Z., Gu M., Jiang J., Li J., Hong G., Xue Y., Han B. Nature 420:316-320(2002) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.
[2]	"The map-based sequence of the rice genome." International rice genome sequencing project (IRGSP) Nature 436:793-800(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.
[3]	"The rice annotation project database (RAP-DB): 2008 update." The rice annotation project (RAP) Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract] Cited for: GENOME REANNOTATION. Strain: cv. Nipponbare.
[4]	"The genomes of Oryza sativa: a history of duplications." Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L. , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H. PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.
[5]	"Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice." The rice full-length cDNA consortium Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Strain: cv. Nipponbare.
[6]	"Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice." Wang D., Guo Y., Wu C., Yang G., Li Y., Zheng C. BMC Genomics 9:44-44(2008) [PubMed] [Europe PMC] [Abstract] Cited for: NOMENCLATURE.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AL606652 Genomic DNA. Translation: CAE03603.2. AP008210 Genomic DNA. Translation: BAF16135.1. CM000141 Genomic DNA. Translation: EAZ32371.1. AK070857 mRNA. No translation available.
RefSeq	NP_001054221.1. NM_001060756.1.
UniGene	Os.12216. Os.80192.
3D structure databases
ModBase	Search...
Proteomic databases
PaxDb	Q0J952.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	LOC_Os04g57600.1; LOC_Os04g57600.1; LOC_Os04g57600.
GeneID	4337362.
KEGG	osa:4337362.
Organism-specific databases
Gramene	Q0J952.
Phylogenomic databases
eggNOG	NOG280895.
HOGENOM	HOG000239634.
OMA	YPVEDYE.
ProtClustDB	CLSN2695223.
Gene expression databases
ArrayExpress	Q0J952.
Family and domain databases
InterPro	IPR000571. Znf_CCCH. [Graphical view]
SMART	SM00356. ZnF_C3H1. 3 hits. [Graphical view]
PROSITE	PS50103. ZF_C3H1. 3 hits. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C3H32_ORYSJ

Accession

Primary (citable) accession number: Q0J952
Secondary accession number(s): Q7XPI4

Entry history

Integrated into UniProtKB/Swiss-Prot:	September 2, 2008
Last sequence update:	October 3, 2006
Last modified:	April 3, 2013
This is version 42 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Plant Protein Annotation Program