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Q0J930

- GUN13_ORYSJ

UniProt

Q0J930 - GUN13_ORYSJ

Protein

Endoglucanase 13

Gene

GLU6

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 55 (01 Oct 2014)
      Sequence version 1 (03 Oct 2006)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    Endohydrolysis of (1->4)-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei427 – 4271PROSITE-ProRule annotation
    Active sitei479 – 4791PROSITE-ProRule annotation
    Active sitei488 – 4881PROSITE-ProRule annotation

    GO - Molecular functioni

    1. carbohydrate binding Source: InterPro
    2. cellulase activity Source: UniProtKB-EC

    GO - Biological processi

    1. cellulose catabolic process Source: UniProtKB-KW

    Keywords - Molecular functioni

    Glycosidase, Hydrolase

    Keywords - Biological processi

    Carbohydrate metabolism, Cellulose degradation, Polysaccharide degradation

    Protein family/group databases

    CAZyiCBM49. Carbohydrate-Binding Module Family 49.
    GH9. Glycoside Hydrolase Family 9.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Endoglucanase 13 (EC:3.2.1.4)
    Alternative name(s):
    Endo-1,4-beta glucanase 13
    OsGLU6
    Gene namesi
    Name:GLU6
    Ordered Locus Names:Os04g0674800, LOC_Os04g57860
    ORF Names:OSJNBa0018M05.16
    OrganismiOryza sativa subsp. japonica (Rice)
    Taxonomic identifieri39947 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
    ProteomesiUP000000763: Chromosome 4

    Organism-specific databases

    GrameneiQ0J930.

    Subcellular locationi

    Secreted By similarity

    GO - Cellular componenti

    1. extracellular region Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Secreted

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 3434Sequence AnalysisAdd
    BLAST
    Chaini35 – 625591Endoglucanase 13PRO_0000249290Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Glycosylationi440 – 4401N-linked (GlcNAc...)Sequence Analysis

    Keywords - PTMi

    Glycoprotein

    Expressioni

    Tissue specificityi

    Expressed in roots and flowers.1 Publication

    Structurei

    3D structure databases

    ProteinModelPortaliQ0J930.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Keywords - Domaini

    Signal

    Phylogenomic databases

    eggNOGiNOG05134.
    OMAiAINCAND.

    Family and domain databases

    Gene3Di1.50.10.10. 1 hit.
    InterProiIPR008928. 6-hairpin_glycosidase-like.
    IPR012341. 6hp_glycosidase.
    IPR019028. CBM_49.
    IPR001701. Glyco_hydro_9.
    IPR018221. Glyco_hydro_9_AS.
    [Graphical view]
    PfamiPF09478. CBM49. 1 hit.
    PF00759. Glyco_hydro_9. 1 hit.
    [Graphical view]
    SMARTiSM01063. CBM49. 1 hit.
    [Graphical view]
    SUPFAMiSSF48208. SSF48208. 1 hit.
    PROSITEiPS00698. GLYCOSYL_HYDROL_F9_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    Q0J930-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAATMNKTPA TTFLLIPAAA SLVLLLAAAA SVEASAFDYA GAFDKCLLFF    50
    EAQRSGKLPD DRLVRWRGDS ALTDGFSQGV DLVGGYYDSG DHVKFGLPMA 100
    YAVTMLSWGV VEFEKEMVDG NKLHRVLDAI RWGTNYFVKA HTQHNALWVQ 150
    VGDGDSDHLC WERAEDMSTP RTAFKIDINN PGSEVAGETA AALAAAAKAF 200
    KPYDRMYSDL LLLHSKQLFT FADTFRGKYD DSLQSAKKFY PSASGYQDEL 250
    LWAAAWLYEA TGDEQYLRYV SQNAEAFGGT GWAVTEFSWD NKYAGLQVLL 300
    SKVLFEQGGS AAGYADTLKQ YQAKAEFFLC ACLQKNNGHN VKMTPGGLMY 350
    VSDWSNMQYV SSSAFLLTVY ADYLAESRGT LRCPDGEVKP AEILRFARSQ 400
    VDYVLGKNPK GMSYMVGYGS YYPTHVHHRG ASIPSIYAMN ATVGCMESFD 450
    KYYNSKNADP NVLHGALVGG PDANDAYDDD RCNYQHAEPT LAGNAPMSGV 500
    FARLAASPAD NTPEYTPAPN APSPSNGGSP LEFVHTVTNT WKANGVDYYR 550
    HVVTAKNTCG HAITYLKLQI KELSGEIYGV SRTNAKDMYE FPSWMTRLDA 600
    GAQLTIVYIQ GGPAAKIAVV EYKTA 625
    Length:625
    Mass (Da):68,454
    Last modified:October 3, 2006 - v1
    Checksum:iED817D88518F62B5
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL606457 Genomic DNA. Translation: CAE03241.2.
    AP008210 Genomic DNA. Translation: BAF16157.1.
    AK119913 mRNA. No translation available.
    RefSeqiNP_001054243.1. NM_001060778.1.
    UniGeneiOs.50125.

    Genome annotation databases

    EnsemblPlantsiOS04T0674800-01; OS04T0674800-01; OS04G0674800.
    GeneIDi4337384.
    KEGGiosa:4337384.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL606457 Genomic DNA. Translation: CAE03241.2 .
    AP008210 Genomic DNA. Translation: BAF16157.1 .
    AK119913 mRNA. No translation available.
    RefSeqi NP_001054243.1. NM_001060778.1.
    UniGenei Os.50125.

    3D structure databases

    ProteinModelPortali Q0J930.
    ModBasei Search...
    MobiDBi Search...

    Protein family/group databases

    CAZyi CBM49. Carbohydrate-Binding Module Family 49.
    GH9. Glycoside Hydrolase Family 9.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi OS04T0674800-01 ; OS04T0674800-01 ; OS04G0674800 .
    GeneIDi 4337384.
    KEGGi osa:4337384.

    Organism-specific databases

    Gramenei Q0J930.

    Phylogenomic databases

    eggNOGi NOG05134.
    OMAi AINCAND.

    Family and domain databases

    Gene3Di 1.50.10.10. 1 hit.
    InterProi IPR008928. 6-hairpin_glycosidase-like.
    IPR012341. 6hp_glycosidase.
    IPR019028. CBM_49.
    IPR001701. Glyco_hydro_9.
    IPR018221. Glyco_hydro_9_AS.
    [Graphical view ]
    Pfami PF09478. CBM49. 1 hit.
    PF00759. Glyco_hydro_9. 1 hit.
    [Graphical view ]
    SMARTi SM01063. CBM49. 1 hit.
    [Graphical view ]
    SUPFAMi SSF48208. SSF48208. 1 hit.
    PROSITEi PS00698. GLYCOSYL_HYDROL_F9_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    3. "The rice annotation project database (RAP-DB): 2008 update."
      The rice annotation project (RAP)
      Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENOME REANNOTATION.
      Strain: cv. Nipponbare.
    4. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
      The rice full-length cDNA consortium
      Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: cv. Nipponbare.
    5. "OsGLU1, a putative membrane-bound endo-1,4-beta-D-glucanase from rice, affects plant internode elongation."
      Zhou H.-L., He S.-J., Cao Y.-R., Chen T., Du B.-X., Chu C.-C., Zhang J.-S., Chen S.-Y.
      Plant Mol. Biol. 60:137-151(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: TISSUE SPECIFICITY.

    Entry informationi

    Entry nameiGUN13_ORYSJ
    AccessioniPrimary (citable) accession number: Q0J930
    Secondary accession number(s): Q259H9, Q7XQ92
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: July 10, 2007
    Last sequence update: October 3, 2006
    Last modified: October 1, 2014
    This is version 55 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Glycosyl hydrolases
      Classification of glycosyl hydrolase families and list of entries
    2. Oryza sativa (rice)
      Index of Oryza sativa entries and their corresponding gene designations
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3