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Protein

Endoglucanase 13

Gene

GLU6

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei427 – 4271PROSITE-ProRule annotation
Active sitei479 – 4791PROSITE-ProRule annotation
Active sitei488 – 4881PROSITE-ProRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Glycosidase, Hydrolase

Keywords - Biological processi

Carbohydrate metabolism, Cellulose degradation, Polysaccharide degradation

Protein family/group databases

CAZyiCBM49. Carbohydrate-Binding Module Family 49.
GH9. Glycoside Hydrolase Family 9.

Names & Taxonomyi

Protein namesi
Recommended name:
Endoglucanase 13 (EC:3.2.1.4)
Alternative name(s):
Endo-1,4-beta glucanase 13
OsGLU6
Gene namesi
Name:GLU6
Ordered Locus Names:Os04g0674800, LOC_Os04g57860
ORF Names:OSJNBa0018M05.16
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryza
ProteomesiUP000000763 Componenti: Chromosome 4

Organism-specific databases

GrameneiQ0J930.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 3434Sequence AnalysisAdd
BLAST
Chaini35 – 625591Endoglucanase 13PRO_0000249290Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi440 – 4401N-linked (GlcNAc...)Sequence Analysis

Keywords - PTMi

Glycoprotein

Expressioni

Tissue specificityi

Expressed in roots and flowers.1 Publication

Gene expression databases

ExpressionAtlasiQ0J930. baseline.

Interactioni

Protein-protein interaction databases

STRINGi39947.LOC_Os04g57860.1.

Structurei

3D structure databases

ProteinModelPortaliQ0J930.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiNOG05134.
InParanoidiQ0J930.
OMAiCGHAITY.

Family and domain databases

Gene3Di1.50.10.10. 1 hit.
InterProiIPR008928. 6-hairpin_glycosidase-like.
IPR012341. 6hp_glycosidase.
IPR019028. CBM_49.
IPR001701. Glyco_hydro_9.
IPR018221. Glyco_hydro_9_AS.
[Graphical view]
PfamiPF09478. CBM49. 1 hit.
PF00759. Glyco_hydro_9. 1 hit.
[Graphical view]
SMARTiSM01063. CBM49. 1 hit.
[Graphical view]
SUPFAMiSSF48208. SSF48208. 1 hit.
PROSITEiPS00698. GLYCOSYL_HYDROL_F9_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q0J930-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAATMNKTPA TTFLLIPAAA SLVLLLAAAA SVEASAFDYA GAFDKCLLFF
60 70 80 90 100
EAQRSGKLPD DRLVRWRGDS ALTDGFSQGV DLVGGYYDSG DHVKFGLPMA
110 120 130 140 150
YAVTMLSWGV VEFEKEMVDG NKLHRVLDAI RWGTNYFVKA HTQHNALWVQ
160 170 180 190 200
VGDGDSDHLC WERAEDMSTP RTAFKIDINN PGSEVAGETA AALAAAAKAF
210 220 230 240 250
KPYDRMYSDL LLLHSKQLFT FADTFRGKYD DSLQSAKKFY PSASGYQDEL
260 270 280 290 300
LWAAAWLYEA TGDEQYLRYV SQNAEAFGGT GWAVTEFSWD NKYAGLQVLL
310 320 330 340 350
SKVLFEQGGS AAGYADTLKQ YQAKAEFFLC ACLQKNNGHN VKMTPGGLMY
360 370 380 390 400
VSDWSNMQYV SSSAFLLTVY ADYLAESRGT LRCPDGEVKP AEILRFARSQ
410 420 430 440 450
VDYVLGKNPK GMSYMVGYGS YYPTHVHHRG ASIPSIYAMN ATVGCMESFD
460 470 480 490 500
KYYNSKNADP NVLHGALVGG PDANDAYDDD RCNYQHAEPT LAGNAPMSGV
510 520 530 540 550
FARLAASPAD NTPEYTPAPN APSPSNGGSP LEFVHTVTNT WKANGVDYYR
560 570 580 590 600
HVVTAKNTCG HAITYLKLQI KELSGEIYGV SRTNAKDMYE FPSWMTRLDA
610 620
GAQLTIVYIQ GGPAAKIAVV EYKTA
Length:625
Mass (Da):68,454
Last modified:October 3, 2006 - v1
Checksum:iED817D88518F62B5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL606457 Genomic DNA. Translation: CAE03241.2.
AP008210 Genomic DNA. Translation: BAF16157.1.
AK119913 mRNA. No translation available.
RefSeqiNP_001054243.1. NM_001060778.1.
UniGeneiOs.50125.

Genome annotation databases

EnsemblPlantsiOS04T0674800-01; OS04T0674800-01; OS04G0674800.
GeneIDi4337384.
KEGGiosa:4337384.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL606457 Genomic DNA. Translation: CAE03241.2.
AP008210 Genomic DNA. Translation: BAF16157.1.
AK119913 mRNA. No translation available.
RefSeqiNP_001054243.1. NM_001060778.1.
UniGeneiOs.50125.

3D structure databases

ProteinModelPortaliQ0J930.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi39947.LOC_Os04g57860.1.

Protein family/group databases

CAZyiCBM49. Carbohydrate-Binding Module Family 49.
GH9. Glycoside Hydrolase Family 9.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiOS04T0674800-01; OS04T0674800-01; OS04G0674800.
GeneIDi4337384.
KEGGiosa:4337384.

Organism-specific databases

GrameneiQ0J930.

Phylogenomic databases

eggNOGiNOG05134.
InParanoidiQ0J930.
OMAiCGHAITY.

Gene expression databases

ExpressionAtlasiQ0J930. baseline.

Family and domain databases

Gene3Di1.50.10.10. 1 hit.
InterProiIPR008928. 6-hairpin_glycosidase-like.
IPR012341. 6hp_glycosidase.
IPR019028. CBM_49.
IPR001701. Glyco_hydro_9.
IPR018221. Glyco_hydro_9_AS.
[Graphical view]
PfamiPF09478. CBM49. 1 hit.
PF00759. Glyco_hydro_9. 1 hit.
[Graphical view]
SMARTiSM01063. CBM49. 1 hit.
[Graphical view]
SUPFAMiSSF48208. SSF48208. 1 hit.
PROSITEiPS00698. GLYCOSYL_HYDROL_F9_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  3. "The rice annotation project database (RAP-DB): 2008 update."
    The rice annotation project (RAP)
    Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: cv. Nipponbare.
  4. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
    The rice full-length cDNA consortium
    Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Nipponbare.
  5. "OsGLU1, a putative membrane-bound endo-1,4-beta-D-glucanase from rice, affects plant internode elongation."
    Zhou H.-L., He S.-J., Cao Y.-R., Chen T., Du B.-X., Chu C.-C., Zhang J.-S., Chen S.-Y.
    Plant Mol. Biol. 60:137-151(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: TISSUE SPECIFICITY.

Entry informationi

Entry nameiGUN13_ORYSJ
AccessioniPrimary (citable) accession number: Q0J930
Secondary accession number(s): Q259H9, Q7XQ92
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 10, 2007
Last sequence update: October 3, 2006
Last modified: June 24, 2015
This is version 59 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  2. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.