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Q0J930

- GUN13_ORYSJ

UniProt

Q0J930 - GUN13_ORYSJ

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Protein

Endoglucanase 13

Gene
GLU6, Os04g0674800, LOC_Os04g57860, OSJNBa0018M05.16
Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at transcript leveli

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei427 – 4271 By similarity
Active sitei479 – 4791 By similarity
Active sitei488 – 4881 By similarity

GO - Molecular functioni

  1. carbohydrate binding Source: InterPro
  2. cellulase activity Source: UniProtKB-EC

GO - Biological processi

  1. cellulose catabolic process Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Glycosidase, Hydrolase

Keywords - Biological processi

Carbohydrate metabolism, Cellulose degradation, Polysaccharide degradation

Protein family/group databases

CAZyiCBM49. Carbohydrate-Binding Module Family 49.
GH9. Glycoside Hydrolase Family 9.

Names & Taxonomyi

Protein namesi
Recommended name:
Endoglucanase 13 (EC:3.2.1.4)
Alternative name(s):
Endo-1,4-beta glucanase 13
OsGLU6
Gene namesi
Name:GLU6
Ordered Locus Names:Os04g0674800, LOC_Os04g57860
ORF Names:OSJNBa0018M05.16
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
ProteomesiUP000000763: Chromosome 4

Organism-specific databases

GrameneiQ0J930.

Subcellular locationi

Secreted By similarity

GO - Cellular componenti

  1. extracellular region Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 3434 Reviewed predictionAdd
BLAST
Chaini35 – 625591Endoglucanase 13PRO_0000249290Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi440 – 4401N-linked (GlcNAc...) Reviewed prediction

Keywords - PTMi

Glycoprotein

Expressioni

Tissue specificityi

Expressed in roots and flowers.1 Publication

Structurei

3D structure databases

ProteinModelPortaliQ0J930.

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiNOG05134.
OMAiAINCAND.

Family and domain databases

Gene3Di1.50.10.10. 1 hit.
InterProiIPR008928. 6-hairpin_glycosidase-like.
IPR012341. 6hp_glycosidase.
IPR019028. CBM_49.
IPR001701. Glyco_hydro_9.
IPR018221. Glyco_hydro_9_AS.
[Graphical view]
PfamiPF09478. CBM49. 1 hit.
PF00759. Glyco_hydro_9. 1 hit.
[Graphical view]
SMARTiSM01063. CBM49. 1 hit.
[Graphical view]
SUPFAMiSSF48208. SSF48208. 1 hit.
PROSITEiPS00698. GLYCOSYL_HYDROL_F9_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q0J930-1 [UniParc]FASTAAdd to Basket

« Hide

MAATMNKTPA TTFLLIPAAA SLVLLLAAAA SVEASAFDYA GAFDKCLLFF    50
EAQRSGKLPD DRLVRWRGDS ALTDGFSQGV DLVGGYYDSG DHVKFGLPMA 100
YAVTMLSWGV VEFEKEMVDG NKLHRVLDAI RWGTNYFVKA HTQHNALWVQ 150
VGDGDSDHLC WERAEDMSTP RTAFKIDINN PGSEVAGETA AALAAAAKAF 200
KPYDRMYSDL LLLHSKQLFT FADTFRGKYD DSLQSAKKFY PSASGYQDEL 250
LWAAAWLYEA TGDEQYLRYV SQNAEAFGGT GWAVTEFSWD NKYAGLQVLL 300
SKVLFEQGGS AAGYADTLKQ YQAKAEFFLC ACLQKNNGHN VKMTPGGLMY 350
VSDWSNMQYV SSSAFLLTVY ADYLAESRGT LRCPDGEVKP AEILRFARSQ 400
VDYVLGKNPK GMSYMVGYGS YYPTHVHHRG ASIPSIYAMN ATVGCMESFD 450
KYYNSKNADP NVLHGALVGG PDANDAYDDD RCNYQHAEPT LAGNAPMSGV 500
FARLAASPAD NTPEYTPAPN APSPSNGGSP LEFVHTVTNT WKANGVDYYR 550
HVVTAKNTCG HAITYLKLQI KELSGEIYGV SRTNAKDMYE FPSWMTRLDA 600
GAQLTIVYIQ GGPAAKIAVV EYKTA 625
Length:625
Mass (Da):68,454
Last modified:October 3, 2006 - v1
Checksum:iED817D88518F62B5
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AL606457 Genomic DNA. Translation: CAE03241.2.
AP008210 Genomic DNA. Translation: BAF16157.1.
AK119913 mRNA. No translation available.
RefSeqiNP_001054243.1. NM_001060778.1.
UniGeneiOs.50125.

Genome annotation databases

EnsemblPlantsiOS04T0674800-01; OS04T0674800-01; OS04G0674800.
GeneIDi4337384.
KEGGiosa:4337384.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AL606457 Genomic DNA. Translation: CAE03241.2 .
AP008210 Genomic DNA. Translation: BAF16157.1 .
AK119913 mRNA. No translation available.
RefSeqi NP_001054243.1. NM_001060778.1.
UniGenei Os.50125.

3D structure databases

ProteinModelPortali Q0J930.
ModBasei Search...
MobiDBi Search...

Protein family/group databases

CAZyi CBM49. Carbohydrate-Binding Module Family 49.
GH9. Glycoside Hydrolase Family 9.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi OS04T0674800-01 ; OS04T0674800-01 ; OS04G0674800 .
GeneIDi 4337384.
KEGGi osa:4337384.

Organism-specific databases

Gramenei Q0J930.

Phylogenomic databases

eggNOGi NOG05134.
OMAi AINCAND.

Family and domain databases

Gene3Di 1.50.10.10. 1 hit.
InterProi IPR008928. 6-hairpin_glycosidase-like.
IPR012341. 6hp_glycosidase.
IPR019028. CBM_49.
IPR001701. Glyco_hydro_9.
IPR018221. Glyco_hydro_9_AS.
[Graphical view ]
Pfami PF09478. CBM49. 1 hit.
PF00759. Glyco_hydro_9. 1 hit.
[Graphical view ]
SMARTi SM01063. CBM49. 1 hit.
[Graphical view ]
SUPFAMi SSF48208. SSF48208. 1 hit.
PROSITEi PS00698. GLYCOSYL_HYDROL_F9_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  3. "The rice annotation project database (RAP-DB): 2008 update."
    The rice annotation project (RAP)
    Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: cv. Nipponbare.
  4. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
    The rice full-length cDNA consortium
    Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Nipponbare.
  5. "OsGLU1, a putative membrane-bound endo-1,4-beta-D-glucanase from rice, affects plant internode elongation."
    Zhou H.-L., He S.-J., Cao Y.-R., Chen T., Du B.-X., Chu C.-C., Zhang J.-S., Chen S.-Y.
    Plant Mol. Biol. 60:137-151(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: TISSUE SPECIFICITY.

Entry informationi

Entry nameiGUN13_ORYSJ
AccessioniPrimary (citable) accession number: Q0J930
Secondary accession number(s): Q259H9, Q7XQ92
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 10, 2007
Last sequence update: October 3, 2006
Last modified: May 14, 2014
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  2. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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