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Q0IZZ8 (BGA12_ORYSJ) Reviewed, UniProtKB/Swiss-Prot

Last modified November 13, 2013. Version 50. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Beta-galactosidase 12

Short name=Lactase 12
EC=3.2.1.23
Gene names
Ordered Locus Names:Os09g0539200, LOC_Os09g36810
ORF Names:OsJ_028990
OrganismOryza sativa subsp. japonica (Rice) [Reference proteome]
Taxonomic identifier39947 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza

Protein attributes

Sequence length911 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at transcript level

General annotation (Comments)

Catalytic activity

Hydrolysis of terminal non-reducing beta-D-galactose residues in beta-D-galactosides.

Subcellular location

Secretedextracellular spaceapoplast Potential.

Sequence similarities

Belongs to the glycosyl hydrolase 35 family.

Contains 1 SUEL-type lectin domain.

Sequence caution

The sequence BAF25717.1 differs from that shown. Reason: Erroneous gene model prediction.

Ontologies

Keywords
   Cellular componentApoplast
Secreted
   DomainSignal
   Molecular functionGlycosidase
Hydrolase
   PTMGlycoprotein
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Cellular_componentapoplast

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionbeta-galactosidase activity

Inferred from electronic annotation. Source: UniProtKB-EC

carbohydrate binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2525 Potential
Chain26 – 911886Beta-galactosidase 12
PRO_0000294164

Regions

Domain744 – 83188SUEL-type lectin

Sites

Active site1921Proton donor Potential
Active site2621Nucleophile Potential

Amino acid modifications

Glycosylation2631N-linked (GlcNAc...) Potential
Glycosylation3891N-linked (GlcNAc...) Potential
Glycosylation4731N-linked (GlcNAc...) Potential
Glycosylation7771N-linked (GlcNAc...) Potential

Sequences

Sequence LengthMass (Da)Tools
Q0IZZ8 [UniParc].

Last modified July 10, 2007. Version 2.
Checksum: F2E09CB91011ED68

FASTA911102,374
        10         20         30         40         50         60 
MAARVAAAVA AALLAAALLL PGAAAEWTLT KKGTVVSYDE RSLMIDGKRD LFFSGAIHYP 

        70         80         90        100        110        120 
RSPPEMWDKL VKTAKMGGLN TIETYVFWNG HEPEPGKYYF EGRFDLIRFL NVIKDNDMYA 

       130        140        150        160        170        180 
IVRIGPFIQA EWNHGGLPYW LREIGHIIFR ANNEPFKREM EKFVRFIVQK LKDAEMFAPQ 

       190        200        210        220        230        240 
GGPIILSQIE NEYGNIKKDR KVEGDKYLEW AAEMAISTGI GVPWVMCKQS IAPGEVIPTC 

       250        260        270        280        290        300 
NGRHCGDTWT LLDKNKPRLW TENWTAQFRT FGDQLAQRSA EDIAYAVLRF FAKGGTLVNY 

       310        320        330        340        350        360 
YMYHGGTNFG RTGASYVLTG YYDEAPMDEY GMCKEPKFGH LRDLHNVIKS YHKAFLWGKQ 

       370        380        390        400        410        420 
SFEILGHGYE AHNYELPEDK LCLSFLSNNN TGEDGTVVFR GEKFYVPSRS VSILADCKTV 

       430        440        450        460        470        480 
VYNTKRVFVQ HSERSFHTTD ETSKNNVWEM YSEAIPKFRK TKVRTKQPLE QYNQTKDTSD 

       490        500        510        520        530        540 
YLWYTTSFRL ESDDLPFRRD IRPVIQIKST AHAMIGFAND AFVGTGRGSK REKSFVFEKP 

       550        560        570        580        590        600 
MDLRVGINHI AMLSSSMGMK DSGGELVEVK GGIQDCVVQG LNTGTLDLQG NGWGHKARLE 

       610        620        630        640        650        660 
GEDKEIYTEK GMAQFQWKPA ENDLPITWYK RYFDEPDGDD PIVVDMSSMS KGMIYVNGEG 

       670        680        690        700        710        720 
IGRYWTSFIT LAGHPSQSVY HIPRAFLKPK GNLLIIFEEE LGKPGGILIQ TVRRDDICVF 

       730        740        750        760        770        780 
ISEHNPAQIK TWESDGGQIK LIAEDTSTRG TLNCPPKRTI QEVVFASFGN PEGACGNFTA 

       790        800        810        820        830        840 
GTCHTPDAKA IVEKECLGKE SCVLPVVNTV YGADINCPAT TATLAVQLLL ASHVMRIAIC 

       850        860        870        880        890        900 
VRPMLFARNG IVTSVLAHIL GHPEWDRKSL RVKMAGRQNP CPDFTPTKSY GYLFSKPLVA 

       910 
LTVSLDSNLS P 

« Hide

References

« Hide 'large scale' references
[1]"The map-based sequence of the rice genome."
International rice genome sequencing project (IRGSP)
Nature 436:793-800(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.
[2]"The rice annotation project database (RAP-DB): 2008 update."
The rice annotation project (RAP)
Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: GENOME REANNOTATION.
Strain: cv. Nipponbare.
[3]"The genomes of Oryza sativa: a history of duplications."
Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L. expand/collapse author list , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.
PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP008215 Genomic DNA. Translation: BAF25717.1. Sequence problems.
CM000146 Genomic DNA. No translation available.
RefSeqNP_001063803.1. NM_001070338.1.
UniGeneOs.49945.

3D structure databases

ProteinModelPortalQ0IZZ8.
ModBaseSearch...
MobiDBSearch...

Protein family/group databases

CAZyGH35. Glycoside Hydrolase Family 35.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4347718.
KEGGosa:4347718.

Organism-specific databases

GrameneQ0IZZ8.

Phylogenomic databases

eggNOGCOG1874.
HOGENOMHOG000239919.
OMAHIIFRAN.

Family and domain databases

Gene3D2.60.120.260. 1 hit.
3.20.20.80. 1 hit.
InterProIPR008979. Galactose-bd-like.
IPR019801. Glyco_hydro_35_CS.
IPR013781. Glyco_hydro_catalytic_dom.
IPR001944. Glycoside_Hdrlase_35.
IPR017853. Glycoside_hydrolase_SF.
IPR000922. Lectin_gal-bd_dom.
[Graphical view]
PANTHERPTHR23421. PTHR23421. 1 hit.
PfamPF02140. Gal_Lectin. 1 hit.
PF01301. Glyco_hydro_35. 1 hit.
[Graphical view]
PRINTSPR00742. GLHYDRLASE35.
SUPFAMSSF49785. SSF49785. 2 hits.
SSF51445. SSF51445. 1 hit.
PROSITEPS01182. GLYCOSYL_HYDROL_F35. 1 hit.
PS50228. SUEL_LECTIN. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameBGA12_ORYSJ
AccessionPrimary (citable) accession number: Q0IZZ8
Secondary accession number(s): A3C118
Entry history
Integrated into UniProtKB/Swiss-Prot: July 10, 2007
Last sequence update: July 10, 2007
Last modified: November 13, 2013
This is version 50 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Oryza sativa (rice)

Index of Oryza sativa entries and their corresponding gene designations

Glycosyl hydrolases

Classification of glycosyl hydrolase families and list of entries