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Q0IZZ8

- BGA12_ORYSJ

UniProt

Q0IZZ8 - BGA12_ORYSJ

Protein

Beta-galactosidase 12

Gene

Os09g0539200

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 51 (01 Oct 2014)
      Sequence version 2 (10 Jul 2007)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    Hydrolysis of terminal non-reducing beta-D-galactose residues in beta-D-galactosides.

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei192 – 1921Proton donorSequence Analysis
    Active sitei262 – 2621NucleophileSequence Analysis

    GO - Molecular functioni

    1. beta-galactosidase activity Source: UniProtKB-EC
    2. carbohydrate binding Source: InterPro

    GO - Biological processi

    1. carbohydrate metabolic process Source: InterPro

    Keywords - Molecular functioni

    Glycosidase, Hydrolase

    Protein family/group databases

    CAZyiGH35. Glycoside Hydrolase Family 35.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Beta-galactosidase 12 (EC:3.2.1.23)
    Short name:
    Lactase 12
    Gene namesi
    Ordered Locus Names:Os09g0539200, LOC_Os09g36810
    ORF Names:OsJ_028990
    OrganismiOryza sativa subsp. japonica (Rice)
    Taxonomic identifieri39947 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
    ProteomesiUP000000763: Chromosome 9

    Organism-specific databases

    GrameneiQ0IZZ8.

    Subcellular locationi

    GO - Cellular componenti

    1. apoplast Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Apoplast, Secreted

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 2525Sequence AnalysisAdd
    BLAST
    Chaini26 – 911886Beta-galactosidase 12PRO_0000294164Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Glycosylationi263 – 2631N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi389 – 3891N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi473 – 4731N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi777 – 7771N-linked (GlcNAc...)Sequence Analysis

    Keywords - PTMi

    Glycoprotein

    Structurei

    3D structure databases

    ProteinModelPortaliQ0IZZ8.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini744 – 83188SUEL-type lectinPROSITE-ProRule annotationAdd
    BLAST

    Sequence similaritiesi

    Belongs to the glycosyl hydrolase 35 family.Curated
    Contains 1 SUEL-type lectin domain.PROSITE-ProRule annotation

    Keywords - Domaini

    Signal

    Phylogenomic databases

    eggNOGiCOG1874.
    HOGENOMiHOG000239919.
    OMAiHIIFRAN.

    Family and domain databases

    Gene3Di2.60.120.260. 1 hit.
    3.20.20.80. 1 hit.
    InterProiIPR008979. Galactose-bd-like.
    IPR019801. Glyco_hydro_35_CS.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR001944. Glycoside_Hdrlase_35.
    IPR017853. Glycoside_hydrolase_SF.
    IPR000922. Lectin_gal-bd_dom.
    [Graphical view]
    PANTHERiPTHR23421. PTHR23421. 1 hit.
    PfamiPF02140. Gal_Lectin. 1 hit.
    PF01301. Glyco_hydro_35. 1 hit.
    [Graphical view]
    PRINTSiPR00742. GLHYDRLASE35.
    SUPFAMiSSF49785. SSF49785. 2 hits.
    SSF51445. SSF51445. 1 hit.
    PROSITEiPS01182. GLYCOSYL_HYDROL_F35. 1 hit.
    PS50228. SUEL_LECTIN. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    Q0IZZ8-1 [UniParc]FASTAAdd to Basket

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    MAARVAAAVA AALLAAALLL PGAAAEWTLT KKGTVVSYDE RSLMIDGKRD    50
    LFFSGAIHYP RSPPEMWDKL VKTAKMGGLN TIETYVFWNG HEPEPGKYYF 100
    EGRFDLIRFL NVIKDNDMYA IVRIGPFIQA EWNHGGLPYW LREIGHIIFR 150
    ANNEPFKREM EKFVRFIVQK LKDAEMFAPQ GGPIILSQIE NEYGNIKKDR 200
    KVEGDKYLEW AAEMAISTGI GVPWVMCKQS IAPGEVIPTC NGRHCGDTWT 250
    LLDKNKPRLW TENWTAQFRT FGDQLAQRSA EDIAYAVLRF FAKGGTLVNY 300
    YMYHGGTNFG RTGASYVLTG YYDEAPMDEY GMCKEPKFGH LRDLHNVIKS 350
    YHKAFLWGKQ SFEILGHGYE AHNYELPEDK LCLSFLSNNN TGEDGTVVFR 400
    GEKFYVPSRS VSILADCKTV VYNTKRVFVQ HSERSFHTTD ETSKNNVWEM 450
    YSEAIPKFRK TKVRTKQPLE QYNQTKDTSD YLWYTTSFRL ESDDLPFRRD 500
    IRPVIQIKST AHAMIGFAND AFVGTGRGSK REKSFVFEKP MDLRVGINHI 550
    AMLSSSMGMK DSGGELVEVK GGIQDCVVQG LNTGTLDLQG NGWGHKARLE 600
    GEDKEIYTEK GMAQFQWKPA ENDLPITWYK RYFDEPDGDD PIVVDMSSMS 650
    KGMIYVNGEG IGRYWTSFIT LAGHPSQSVY HIPRAFLKPK GNLLIIFEEE 700
    LGKPGGILIQ TVRRDDICVF ISEHNPAQIK TWESDGGQIK LIAEDTSTRG 750
    TLNCPPKRTI QEVVFASFGN PEGACGNFTA GTCHTPDAKA IVEKECLGKE 800
    SCVLPVVNTV YGADINCPAT TATLAVQLLL ASHVMRIAIC VRPMLFARNG 850
    IVTSVLAHIL GHPEWDRKSL RVKMAGRQNP CPDFTPTKSY GYLFSKPLVA 900
    LTVSLDSNLS P 911
    Length:911
    Mass (Da):102,374
    Last modified:July 10, 2007 - v2
    Checksum:iF2E09CB91011ED68
    GO

    Sequence cautioni

    The sequence BAF25717.1 differs from that shown. Reason: Erroneous gene model prediction.

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP008215 Genomic DNA. Translation: BAF25717.1. Sequence problems.
    CM000146 Genomic DNA. No translation available.
    RefSeqiNP_001063803.1. NM_001070338.1.
    UniGeneiOs.49945.

    Genome annotation databases

    GeneIDi4347718.
    KEGGiosa:4347718.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP008215 Genomic DNA. Translation: BAF25717.1 . Sequence problems.
    CM000146 Genomic DNA. No translation available.
    RefSeqi NP_001063803.1. NM_001070338.1.
    UniGenei Os.49945.

    3D structure databases

    ProteinModelPortali Q0IZZ8.
    ModBasei Search...
    MobiDBi Search...

    Protein family/group databases

    CAZyi GH35. Glycoside Hydrolase Family 35.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 4347718.
    KEGGi osa:4347718.

    Organism-specific databases

    Gramenei Q0IZZ8.

    Phylogenomic databases

    eggNOGi COG1874.
    HOGENOMi HOG000239919.
    OMAi HIIFRAN.

    Family and domain databases

    Gene3Di 2.60.120.260. 1 hit.
    3.20.20.80. 1 hit.
    InterProi IPR008979. Galactose-bd-like.
    IPR019801. Glyco_hydro_35_CS.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR001944. Glycoside_Hdrlase_35.
    IPR017853. Glycoside_hydrolase_SF.
    IPR000922. Lectin_gal-bd_dom.
    [Graphical view ]
    PANTHERi PTHR23421. PTHR23421. 1 hit.
    Pfami PF02140. Gal_Lectin. 1 hit.
    PF01301. Glyco_hydro_35. 1 hit.
    [Graphical view ]
    PRINTSi PR00742. GLHYDRLASE35.
    SUPFAMi SSF49785. SSF49785. 2 hits.
    SSF51445. SSF51445. 1 hit.
    PROSITEi PS01182. GLYCOSYL_HYDROL_F35. 1 hit.
    PS50228. SUEL_LECTIN. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    2. "The rice annotation project database (RAP-DB): 2008 update."
      The rice annotation project (RAP)
      Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENOME REANNOTATION.
      Strain: cv. Nipponbare.
    3. "The genomes of Oryza sativa: a history of duplications."
      Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.
      , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.
      PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.

    Entry informationi

    Entry nameiBGA12_ORYSJ
    AccessioniPrimary (citable) accession number: Q0IZZ8
    Secondary accession number(s): A3C118
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: July 10, 2007
    Last sequence update: July 10, 2007
    Last modified: October 1, 2014
    This is version 51 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Glycosyl hydrolases
      Classification of glycosyl hydrolase families and list of entries
    2. Oryza sativa (rice)
      Index of Oryza sativa entries and their corresponding gene designations
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3