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Q0IPF7 (Q0IPF7_ORYSJ) Unreviewed, UniProtKB/TrEMBL

Last modified March 19, 2014. Version 60. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Os12g0207600 EMBL BAF29408.1
OrganismOryza sativa subsp. japonica (Rice) [Reference proteome] EMBL BAF29408.1
Taxonomic identifier39947 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza

Protein attributes

Sequence length520 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the RuBisCO large chain family. RuleBase RU004228

Sequences

Sequence LengthMass (Da)Tools
Q0IPF7 [UniParc].

Last modified October 3, 2006. Version 1.
Checksum: F385D981B806607C

FASTA52059,032
        10         20         30         40         50         60 
MSPQTETKAN VGFKAGVKDY KLTYYTPEYE TKDTDILAAF RVTPQPGVPP EEAGAAVAAE 

        70         80         90        100        110        120 
SSTGTWTTVW TDGLTSLDRY KGRCYHIEPV VGEDNQYIAY VAYPLDLFEE GFVTNMFTSI 

       130        140        150        160        170        180 
VGNIFGFKAL RALRLEDLRI PPTYSKTFQG PPHGIQVERD KLNKYDRPLL GCTIKPKLGL 

       190        200        210        220        230        240 
SAKNYGRACY ECLRGGLDFT KDDENVNSQP FMRWRDRFVF CAEAIYKSQA ETGEIKGHYL 

       250        260        270        280        290        300 
NATAGDSPQI LVWLIIAATT AYFFTFTEQC MQLLIDRKIM DWVSMPGVIP VASGGIHVWH 

       310        320        330        340        350        360 
MPALTEIFGD DSVLQFGGGT LGHPWGNAPG AAANRVALEA CVQARNEGRD LAREACKWSP 

       370        380        390        400        410        420 
ELAAACEIWK VIKFEFEPYL QKKYYEPRCR GFESLLAHSL PKGKGLYFPP EGRKTMIGIA 

       430        440        450        460        470        480 
DVKLLNLEKY MKKKGGRKFF GFMVKEEKEE NWGSVEFQVF SFTNKIRRLA SHLELHKKDF 

       490        500        510        520 
SSERGLRRLL GKRQRLLAYL AKKNRVRYKK LISQLDIREW 

« Hide

References

« Hide 'large scale' references
[1]"The map-based sequence of the rice genome."
International rice genome sequencing project (IRGSP)
Nature 436:793-800(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.
[2]"The rice annotation project database (RAP-DB): 2008 update."
The rice annotation project (RAP)
Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: GENOME REANNOTATION.
Strain: cv. Nipponbare.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP008218 Genomic DNA. Translation: BAF29408.1.
RefSeqNP_001066389.1. NM_001072921.1.

3D structure databases

ProteinModelPortalQ0IPF7.
ModBaseSearch...
MobiDBSearch...

Proteomic databases

PRIDEQ0IPF7.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4351758.
KEGGosa:4351758.

Organism-specific databases

GrameneQ0IPF7.

Phylogenomic databases

KOK01601.

Family and domain databases

Gene3D1.10.287.10. 1 hit.
3.20.20.110. 2 hits.
3.30.70.150. 1 hit.
HAMAPMF_01343_B. Ribosomal_S15_B.
InterProIPR000589. Ribosomal_S15.
IPR005290. Ribosomal_S15_bac-type.
IPR020878. RuBisCo_large_chain_AS.
IPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
IPR017444. RuBisCO_lsu_N.
IPR009068. S15_NS1_RNA-bd.
[Graphical view]
PfamPF00312. Ribosomal_S15. 1 hit.
PF00016. RuBisCO_large. 2 hits.
PF02788. RuBisCO_large_N. 1 hit.
[Graphical view]
SUPFAMSSF47060. SSF47060. 1 hit.
SSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
TIGRFAMsTIGR00952. S15_bact. 1 hit.
PROSITEPS00362. RIBOSOMAL_S15. 1 hit.
PS00157. RUBISCO_LARGE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ0IPF7_ORYSJ
AccessionPrimary (citable) accession number: Q0IPF7
Entry history
Integrated into UniProtKB/TrEMBL: October 3, 2006
Last sequence update: October 3, 2006
Last modified: March 19, 2014
This is version 60 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)