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Q0INY7

- RBS1_ORYSJ

UniProt

Q0INY7 - RBS1_ORYSJ

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Protein

Ribulose bisphosphate carboxylase small chain, chloroplastic

Gene
RBCS, RBCS-C, Os12g0274700, LOC_Os12g17600, OsJ_016909
Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 5 out of 5 - Experimental evidence at protein leveli

Functioni

RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site By similarity.

Catalytic activityi

2 3-phospho-D-glycerate + 2 H+ = D-ribulose 1,5-bisphosphate + CO2 + H2O.
3-phospho-D-glycerate + 2-phosphoglycolate = D-ribulose 1,5-bisphosphate + O2.

GO - Molecular functioni

  1. copper ion binding Source: EnsemblPlants/Gramene
  2. monooxygenase activity Source: UniProtKB-KW
  3. ribulose-bisphosphate carboxylase activity Source: UniProtKB-EC

GO - Biological processi

  1. chloroplast ribulose bisphosphate carboxylase complex biogenesis Source: EnsemblPlants/Gramene
  2. photorespiration Source: UniProtKB-KW
  3. reductive pentose-phosphate cycle Source: UniProtKB-KW
  4. response to blue light Source: EnsemblPlants/Gramene
  5. response to cold Source: EnsemblPlants/Gramene
  6. response to far red light Source: EnsemblPlants/Gramene
  7. response to red light Source: EnsemblPlants/Gramene
Complete GO annotation...

Keywords - Molecular functioni

Lyase, Monooxygenase, Oxidoreductase

Keywords - Biological processi

Calvin cycle, Carbon dioxide fixation, Photorespiration, Photosynthesis

Names & Taxonomyi

Protein namesi
Recommended name:
Ribulose bisphosphate carboxylase small chain, chloroplastic (EC:4.1.1.39)
Short name:
Ribulose bisphosphate carboxylase small chain C
Short name:
RuBisCO small subunit
Short name:
RuBisCO small subunit C
Gene namesi
Name:RBCS
Synonyms:RBCS-C
Ordered Locus Names:Os12g0274700, LOC_Os12g17600
ORF Names:OsJ_016909
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
ProteomesiUP000000763: Chromosome 12

Organism-specific databases

GrameneiQ0INY7.

Subcellular locationi

GO - Cellular componenti

  1. apoplast Source: EnsemblPlants/Gramene
  2. chloroplast envelope Source: EnsemblPlants/Gramene
  3. chloroplast thylakoid membrane Source: EnsemblPlants/Gramene
  4. cytosolic ribosome Source: EnsemblPlants/Gramene
  5. thylakoid lumen Source: EnsemblPlants/Gramene
Complete GO annotation...

Keywords - Cellular componenti

Chloroplast, Plastid

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transit peptidei1 – 4747Chloroplast1 PublicationAdd
BLAST
Chaini48 – 175128Ribulose bisphosphate carboxylase small chain, chloroplasticPRO_0000031537Add
BLAST

Proteomic databases

PaxDbiQ0INY7.

Interactioni

Subunit structurei

8 large chains + 8 small chains.

Structurei

Secondary structure

1
175
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi53 – 553
Turni61 – 644
Helixi70 – 8213
Beta strandi86 – 938
Beta strandi109 – 1113
Beta strandi114 – 1174
Helixi126 – 13914
Beta strandi143 – 1519
Turni152 – 1554
Beta strandi156 – 1649

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1WDDX-ray1.35S/W48-175[»]
3AXKX-ray1.90S/T48-175[»]
3AXMX-ray1.65S/T/U/V/W/X/Y/Z48-175[»]
ProteinModelPortaliQ0INY7.
SMRiQ0INY7. Positions 49-169.

Miscellaneous databases

EvolutionaryTraceiQ0INY7.

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni60 – 645Interaction with large subunit

Sequence similaritiesi

Keywords - Domaini

Transit peptide

Phylogenomic databases

eggNOGiCOG4451.
KOiK01602.
OMAiVKEVEEC.

Family and domain databases

Gene3Di3.30.190.10. 1 hit.
InterProiIPR024681. RuBisCO_sc.
IPR000894. RuBisCO_sc_dom.
IPR024680. RuBisCO_ssu_N.
[Graphical view]
PfamiPF12338. RbcS. 1 hit.
PF00101. RuBisCO_small. 1 hit.
[Graphical view]
PRINTSiPR00152. RUBISCOSMALL.
SUPFAMiSSF55239. SSF55239. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q0INY7-1 [UniParc]FASTAAdd to Basket

« Hide

MAPSVMASSA TTVAPFQGLK STAGMPVARR SGNSSFGNVS NGGRIRCMQV    50
WPIEGIKKFE TLSYLPPLTV EDLLKQIEYL LRSKWVPCLE FSKVGFVYRE 100
NHRSPGYYDG RYWTMWKLPM FGCTDATQVL KELEEAKKAY PDAFVRIIGF 150
DNVRQVQLIS FIAYKPPGCE ESGGN 175
Length:175
Mass (Da):19,647
Last modified:October 3, 2006 - v1
Checksum:iE95B68AC3178A7D7
GO

Sequence cautioni

The sequence CAA30393.1 differs from that shown. Reason: Sequencing errors.
The sequence CAA30393.1 differs from that shown. Reason: Frameshift at several positions.

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X07515 Genomic DNA. Translation: CAA30393.1. Sequence problems.
D00643 mRNA. Translation: BAA00538.1.
AF052305 mRNA. Translation: AAC14064.1.
DP000011 Genomic DNA. Translation: ABA97056.1.
AP008218 Genomic DNA. Translation: BAF29578.1.
CM000142 Genomic DNA. Translation: EAZ33426.1.
PIRiJA0070. RKRZS9.
S01235. RKRZS.
RefSeqiNP_001066559.1. NM_001073091.1.
UniGeneiOs.22440.

Genome annotation databases

EnsemblPlantsiOS12T0274700-01; OS12T0274700-01; OS12G0274700.
OS12T0274700-02; OS12T0274700-02; OS12G0274700.
GeneIDi4351966.
KEGGiosa:4351966.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X07515 Genomic DNA. Translation: CAA30393.1 . Sequence problems.
D00643 mRNA. Translation: BAA00538.1 .
AF052305 mRNA. Translation: AAC14064.1 .
DP000011 Genomic DNA. Translation: ABA97056.1 .
AP008218 Genomic DNA. Translation: BAF29578.1 .
CM000142 Genomic DNA. Translation: EAZ33426.1 .
PIRi JA0070. RKRZS9.
S01235. RKRZS.
RefSeqi NP_001066559.1. NM_001073091.1.
UniGenei Os.22440.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1WDD X-ray 1.35 S/W 48-175 [» ]
3AXK X-ray 1.90 S/T 48-175 [» ]
3AXM X-ray 1.65 S/T/U/V/W/X/Y/Z 48-175 [» ]
ProteinModelPortali Q0INY7.
SMRi Q0INY7. Positions 49-169.
ModBasei Search...
MobiDBi Search...

Proteomic databases

PaxDbi Q0INY7.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi OS12T0274700-01 ; OS12T0274700-01 ; OS12G0274700 .
OS12T0274700-02 ; OS12T0274700-02 ; OS12G0274700 .
GeneIDi 4351966.
KEGGi osa:4351966.

Organism-specific databases

Gramenei Q0INY7.

Phylogenomic databases

eggNOGi COG4451.
KOi K01602.
OMAi VKEVEEC.

Miscellaneous databases

EvolutionaryTracei Q0INY7.

Family and domain databases

Gene3Di 3.30.190.10. 1 hit.
InterProi IPR024681. RuBisCO_sc.
IPR000894. RuBisCO_sc_dom.
IPR024680. RuBisCO_ssu_N.
[Graphical view ]
Pfami PF12338. RbcS. 1 hit.
PF00101. RuBisCO_small. 1 hit.
[Graphical view ]
PRINTSi PR00152. RUBISCOSMALL.
SUPFAMi SSF55239. SSF55239. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Nucleotide sequence of a ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit gene (rbcS) in rice."
    Xie Y., Wu R.
    Nucleic Acids Res. 16:7749-7749(1988) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "Classification and nucleotide sequence of cDNA encoding the small subunit of ribulose-1,5-bisphosphate carboxylase from rice."
    Matsuoka M., Kano-Murakami Y., Tanaka Y., Ozeki Y., Yamamoto N.
    Plant Cell Physiol. 29:1015-1022(1988)
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Strain: cv. Nipponbare.
  3. "Molecular cloning and characterization of cDNA encoding the small subunit of ribulose 1,5-bisphosphate carboxylase in rice."
    Yoon U.H., Hahn J.H., Yun C.-H., Eun M.Y.
    Submitted (MAR-1998) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Strain: cv. Ilpoombyeo.
  4. "The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications."
    The rice chromosomes 11 and 12 sequencing consortia
    BMC Biol. 3:20-20(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  5. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  6. "The rice annotation project database (RAP-DB): 2008 update."
    The rice annotation project (RAP)
    Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: cv. Nipponbare.
  7. "The genomes of Oryza sativa: a history of duplications."
    Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.
    , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.
    PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  8. "Proteomic analysis of rice leaf, stem and root tissues during growth course."
    Nozu Y., Tsugita A., Kamijo K.
    Proteomics 6:3665-3670(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE [LARGE SCALE ANALYSIS] OF 48-54, IDENTIFICATION BY MASS SPECTROMETRY.
    Strain: cv. Nipponbare.
  9. "Crystal structure of activated rice RuBisCO complexed with 2-carboxyarabinitol-1,5-bisphosphate."
    Mizohata E., Matsumura H., Ueno T., Ishida H., Inoue T., Mae T., Kai Y.
    Submitted (NOV-2004) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.35 ANGSTROMS).
    Strain: cv. Notohikari.
    Tissue: Leaf.

Entry informationi

Entry nameiRBS1_ORYSJ
AccessioniPrimary (citable) accession number: Q0INY7
Secondary accession number(s): O65105
, P05347, P18567, Q2QU37
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 11, 2007
Last sequence update: October 3, 2006
Last modified: May 14, 2014
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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