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Q0INY7

- RBS1_ORYSJ

UniProt

Q0INY7 - RBS1_ORYSJ

Protein

Ribulose bisphosphate carboxylase small chain, chloroplastic

Gene

RBCS

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 5 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 64 (01 Oct 2014)
      Sequence version 1 (03 Oct 2006)
      Previous versions | rss
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    Functioni

    RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site By similarity.By similarity

    Catalytic activityi

    2 3-phospho-D-glycerate + 2 H+ = D-ribulose 1,5-bisphosphate + CO2 + H2O.
    3-phospho-D-glycerate + 2-phosphoglycolate = D-ribulose 1,5-bisphosphate + O2.

    GO - Molecular functioni

    1. copper ion binding Source: EnsemblPlants/Gramene
    2. monooxygenase activity Source: UniProtKB-KW
    3. ribulose-bisphosphate carboxylase activity Source: UniProtKB-EC

    GO - Biological processi

    1. chloroplast ribulose bisphosphate carboxylase complex biogenesis Source: EnsemblPlants/Gramene
    2. photorespiration Source: UniProtKB-KW
    3. reductive pentose-phosphate cycle Source: UniProtKB-KW
    4. response to blue light Source: EnsemblPlants/Gramene
    5. response to cold Source: EnsemblPlants/Gramene
    6. response to far red light Source: EnsemblPlants/Gramene
    7. response to red light Source: EnsemblPlants/Gramene

    Keywords - Molecular functioni

    Lyase, Monooxygenase, Oxidoreductase

    Keywords - Biological processi

    Calvin cycle, Carbon dioxide fixation, Photorespiration, Photosynthesis

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Ribulose bisphosphate carboxylase small chain, chloroplastic (EC:4.1.1.39)
    Short name:
    Ribulose bisphosphate carboxylase small chain C
    Short name:
    RuBisCO small subunit
    Short name:
    RuBisCO small subunit C
    Gene namesi
    Name:RBCS
    Synonyms:RBCS-C
    Ordered Locus Names:Os12g0274700, LOC_Os12g17600
    ORF Names:OsJ_016909
    OrganismiOryza sativa subsp. japonica (Rice)
    Taxonomic identifieri39947 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
    ProteomesiUP000000763: Chromosome 12

    Organism-specific databases

    GrameneiQ0INY7.

    Subcellular locationi

    GO - Cellular componenti

    1. apoplast Source: EnsemblPlants/Gramene
    2. chloroplast envelope Source: EnsemblPlants/Gramene
    3. chloroplast thylakoid membrane Source: EnsemblPlants/Gramene
    4. cytosolic ribosome Source: EnsemblPlants/Gramene
    5. thylakoid lumen Source: EnsemblPlants/Gramene

    Keywords - Cellular componenti

    Chloroplast, Plastid

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Transit peptidei1 – 4747Chloroplast1 PublicationAdd
    BLAST
    Chaini48 – 175128Ribulose bisphosphate carboxylase small chain, chloroplasticPRO_0000031537Add
    BLAST

    Proteomic databases

    PaxDbiQ0INY7.

    Interactioni

    Subunit structurei

    8 large chains + 8 small chains.

    Structurei

    Secondary structure

    1
    175
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Beta strandi53 – 553
    Turni61 – 644
    Helixi70 – 8213
    Beta strandi86 – 938
    Beta strandi109 – 1113
    Beta strandi114 – 1174
    Helixi126 – 13914
    Beta strandi143 – 1519
    Turni152 – 1554
    Beta strandi156 – 1649

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1WDDX-ray1.35S/W48-175[»]
    3AXKX-ray1.90S/T48-175[»]
    3AXMX-ray1.65S/T/U/V/W/X/Y/Z48-175[»]
    ProteinModelPortaliQ0INY7.
    SMRiQ0INY7. Positions 49-169.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiQ0INY7.

    Family & Domainsi

    Region

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Regioni60 – 645Interaction with large subunit

    Sequence similaritiesi

    Belongs to the RuBisCO small chain family.Curated

    Keywords - Domaini

    Transit peptide

    Phylogenomic databases

    eggNOGiCOG4451.
    KOiK01602.
    OMAiVKEVEEC.

    Family and domain databases

    Gene3Di3.30.190.10. 1 hit.
    InterProiIPR024681. RuBisCO_sc.
    IPR000894. RuBisCO_sc_dom.
    IPR024680. RuBisCO_ssu_N.
    [Graphical view]
    PfamiPF12338. RbcS. 1 hit.
    PF00101. RuBisCO_small. 1 hit.
    [Graphical view]
    PRINTSiPR00152. RUBISCOSMALL.
    SUPFAMiSSF55239. SSF55239. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    Q0INY7-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAPSVMASSA TTVAPFQGLK STAGMPVARR SGNSSFGNVS NGGRIRCMQV    50
    WPIEGIKKFE TLSYLPPLTV EDLLKQIEYL LRSKWVPCLE FSKVGFVYRE 100
    NHRSPGYYDG RYWTMWKLPM FGCTDATQVL KELEEAKKAY PDAFVRIIGF 150
    DNVRQVQLIS FIAYKPPGCE ESGGN 175
    Length:175
    Mass (Da):19,647
    Last modified:October 3, 2006 - v1
    Checksum:iE95B68AC3178A7D7
    GO

    Sequence cautioni

    The sequence CAA30393.1 differs from that shown. Reason: Sequencing errors.
    The sequence CAA30393.1 differs from that shown. Reason: Frameshift at several positions.

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X07515 Genomic DNA. Translation: CAA30393.1. Sequence problems.
    D00643 mRNA. Translation: BAA00538.1.
    AF052305 mRNA. Translation: AAC14064.1.
    DP000011 Genomic DNA. Translation: ABA97056.1.
    AP008218 Genomic DNA. Translation: BAF29578.1.
    CM000142 Genomic DNA. Translation: EAZ33426.1.
    PIRiJA0070. RKRZS9.
    S01235. RKRZS.
    RefSeqiNP_001066559.1. NM_001073091.1.
    UniGeneiOs.22440.

    Genome annotation databases

    EnsemblPlantsiOS12T0274700-01; OS12T0274700-01; OS12G0274700.
    OS12T0274700-02; OS12T0274700-02; OS12G0274700.
    GeneIDi4351966.
    KEGGiosa:4351966.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X07515 Genomic DNA. Translation: CAA30393.1 . Sequence problems.
    D00643 mRNA. Translation: BAA00538.1 .
    AF052305 mRNA. Translation: AAC14064.1 .
    DP000011 Genomic DNA. Translation: ABA97056.1 .
    AP008218 Genomic DNA. Translation: BAF29578.1 .
    CM000142 Genomic DNA. Translation: EAZ33426.1 .
    PIRi JA0070. RKRZS9.
    S01235. RKRZS.
    RefSeqi NP_001066559.1. NM_001073091.1.
    UniGenei Os.22440.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1WDD X-ray 1.35 S/W 48-175 [» ]
    3AXK X-ray 1.90 S/T 48-175 [» ]
    3AXM X-ray 1.65 S/T/U/V/W/X/Y/Z 48-175 [» ]
    ProteinModelPortali Q0INY7.
    SMRi Q0INY7. Positions 49-169.
    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PaxDbi Q0INY7.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi OS12T0274700-01 ; OS12T0274700-01 ; OS12G0274700 .
    OS12T0274700-02 ; OS12T0274700-02 ; OS12G0274700 .
    GeneIDi 4351966.
    KEGGi osa:4351966.

    Organism-specific databases

    Gramenei Q0INY7.

    Phylogenomic databases

    eggNOGi COG4451.
    KOi K01602.
    OMAi VKEVEEC.

    Miscellaneous databases

    EvolutionaryTracei Q0INY7.

    Family and domain databases

    Gene3Di 3.30.190.10. 1 hit.
    InterProi IPR024681. RuBisCO_sc.
    IPR000894. RuBisCO_sc_dom.
    IPR024680. RuBisCO_ssu_N.
    [Graphical view ]
    Pfami PF12338. RbcS. 1 hit.
    PF00101. RuBisCO_small. 1 hit.
    [Graphical view ]
    PRINTSi PR00152. RUBISCOSMALL.
    SUPFAMi SSF55239. SSF55239. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Nucleotide sequence of a ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit gene (rbcS) in rice."
      Xie Y., Wu R.
      Nucleic Acids Res. 16:7749-7749(1988) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    2. "Classification and nucleotide sequence of cDNA encoding the small subunit of ribulose-1,5-bisphosphate carboxylase from rice."
      Matsuoka M., Kano-Murakami Y., Tanaka Y., Ozeki Y., Yamamoto N.
      Plant Cell Physiol. 29:1015-1022(1988)
      Cited for: NUCLEOTIDE SEQUENCE [MRNA].
      Strain: cv. Nipponbare.
    3. "Molecular cloning and characterization of cDNA encoding the small subunit of ribulose 1,5-bisphosphate carboxylase in rice."
      Yoon U.H., Hahn J.H., Yun C.-H., Eun M.Y.
      Submitted (MAR-1998) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [MRNA].
      Strain: cv. Ilpoombyeo.
    4. "The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications."
      The rice chromosomes 11 and 12 sequencing consortia
      BMC Biol. 3:20-20(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    5. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    6. "The rice annotation project database (RAP-DB): 2008 update."
      The rice annotation project (RAP)
      Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENOME REANNOTATION.
      Strain: cv. Nipponbare.
    7. "The genomes of Oryza sativa: a history of duplications."
      Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.
      , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.
      PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    8. "Proteomic analysis of rice leaf, stem and root tissues during growth course."
      Nozu Y., Tsugita A., Kamijo K.
      Proteomics 6:3665-3670(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: PROTEIN SEQUENCE [LARGE SCALE ANALYSIS] OF 48-54, IDENTIFICATION BY MASS SPECTROMETRY.
      Strain: cv. Nipponbare.
    9. "Crystal structure of activated rice RuBisCO complexed with 2-carboxyarabinitol-1,5-bisphosphate."
      Mizohata E., Matsumura H., Ueno T., Ishida H., Inoue T., Mae T., Kai Y.
      Submitted (NOV-2004) to the PDB data bank
      Cited for: X-RAY CRYSTALLOGRAPHY (1.35 ANGSTROMS).
      Strain: cv. Notohikari.
      Tissue: Leaf.

    Entry informationi

    Entry nameiRBS1_ORYSJ
    AccessioniPrimary (citable) accession number: Q0INY7
    Secondary accession number(s): O65105
    , P05347, P18567, Q2QU37
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: September 11, 2007
    Last sequence update: October 3, 2006
    Last modified: October 1, 2014
    This is version 64 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. Oryza sativa (rice)
      Index of Oryza sativa entries and their corresponding gene designations
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3